Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	17274918	17274918	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	4	0	4	0	0
AKR7L	246181	hgsc.bcm.edu	37	1	19600479	19600501	+	RNA	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
AKR7A3	22977	hgsc.bcm.edu	37	1	19615114	19615136	+	Frame_Shift_Del	DEL	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGCGGCGCTGGTGGGCGCGTCCA	TGCGGCGCTGGTGGGCGCGTCCA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CELA3B	23436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	22304887	22304887	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
C1orf141	400757	ucsc.edu;bcgsc.ca	37	1	67569025	67569025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KIAA1324	57535	bcgsc.ca	37	1	109737063	109737063	+	Silent	SNP	C	C	T	rs2359246	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
DCST1	149095	hgsc.bcm.edu	37	1	155020586	155020586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CFH	3075	broad.mit.edu	37	1	196706701	196706701	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	11	11	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	197071136	197071136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
CTSE	1510	bcgsc.ca	37	1	206327546	206327546	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813749	248813749	+	Missense_Mutation	SNP	G	G	A	rs76164485		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PROSER2	254427	hgsc.bcm.edu	37	10	11912144	11912144	+	Silent	SNP	C	C	T	rs17851505	byfrequency;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51585100	51585100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	68	66	2	0	0
PCDH15	65217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55943228	55943228	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
BEND3P3	650623	ucsc.edu;bcgsc.ca	37	10	81444079	81444079	+	RNA	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	1	0	0	0
BEND3P3	650623	ucsc.edu	37	10	81444087	81444087	+	RNA	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	1	0	0	0
LZTS2	84445	broad.mit.edu	37	10	102766682	102766682	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	26	19	7	0	0
NEURL	9148	hgsc.bcm.edu	37	10	105344756	105344756	+	Silent	SNP	T	T	C	rs2236209	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
RBM20	282996	hgsc.bcm.edu	37	10	112404302	112404302	+	Silent	SNP	G	G	A	rs35141404	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CTBP2	1488	bcgsc.ca	37	10	126714966	126714966	+	Missense_Mutation	SNP	A	A	G	rs3012075	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219036	134219036	+	Silent	SNP	G	G	A	rs11817589	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	28	28	0	0	0
PWWP2B	170394	hgsc.bcm.edu	37	10	134219045	134219045	+	Silent	SNP	C	C	T	rs11146364	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	29	29	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012430	135012430	+	Silent	SNP	T	T	C	rs3008389	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	4	1	3	0	0
OR51Q1	390061	bcgsc.ca	37	11	5443442	5443442	+	Silent	SNP	G	G	C	rs2736590	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu	37	11	6651810	6651810	+	Silent	SNP	A	A	G	rs2659872	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810239	65810239	+	Silent	SNP	G	G	A	rs78578425		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FADD	8772	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	70049689	70049689	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	9	0	9	0	0
MMP27	64066	broad.mit.edu	37	11	102575318	102575318	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
C2CD2L	9854	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	118986791	118986791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	7	7	0	0	0
CCDC15	80071	ucsc.edu;bcgsc.ca	37	11	124863136	124863136	+	Silent	SNP	C	C	A	rs7951202	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	32136338	32136338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	5	5	0	0	0
ITGB7	3695	hgsc.bcm.edu	37	12	53591607	53591607	+	Silent	SNP	C	C	T	rs181619182	by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ATF7	11016	broad.mit.edu	37	12	53910930	53910930	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	1	0	0	0
CPSF6	11052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	69646896	69646896	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CPSF6	11052	bcgsc.ca;mdanderson.org	37	12	69646898	69646898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	14	14	0	0	0
CPSF6	11052	hgsc.bcm.edu	37	12	69646903	69646903	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
TPTE2	93492	broad.mit.edu	37	13	20025336	20025336	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PCCA	5095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	100925450	100925450	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
NOVA1	4857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	26917292	26917292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	5	1	4	0	0
NPAS3	64067	bcgsc.ca	37	14	34270138	34270138	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
DNAAF2	55172	hgsc.bcm.edu	37	14	50100683	50100683	+	Silent	SNP	C	C	G	rs2985686	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SPTB	6710	bcgsc.ca	37	14	65260227	65260227	+	Silent	SNP	T	T	G	rs229591	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	1	0	0	0
SERPINA3	12	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95085645	95085645	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	77	75	2	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103568729	103568729	+	Silent	SNP	A	A	G	rs10142200	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CKB	1152	hgsc.bcm.edu	37	14	103988180	103988180	+	Silent	SNP	G	G	T	rs1136165	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	79	52	27	0	0
REREP3	646396	bcgsc.ca	37	15	22546658	22546658	+	RNA	SNP	G	G	A	rs4779392	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
GABRG3	2567	bcgsc.ca	37	15	27772676	27772676	+	Silent	SNP	C	C	T	rs140679	bycluster;byfrequency;bysubmitter;byhapmap;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KBTBD13	390594	hgsc.bcm.edu	37	15	65369441	65369441	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FAM219B	57184	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75195092	75195092	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	48	46	2	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79092603	79092603	+	Silent	SNP	G	G	A	rs6495329	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2	0	2	0	0
FANCI	55215	bcgsc.ca	37	15	89804043	89804043	+	Missense_Mutation	SNP	C	C	T	rs17803620	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2	2	0	0	0
OR4F15	390649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	102359139	102359139	+	Missense_Mutation	SNP	C	C	A	rs149793188	byfrequency;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
WFIKKN1	117166	broad.mit.edu	37	16	683832	683832	+	Silent	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	1	0	0	0
NTN3	4917	broad.mit.edu	37	16	2521965	2521965	+	Missense_Mutation	SNP	C	C	A	rs201589632		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
LOC653786	0	broad.mit.edu	37	16	22579763	22579764	+	RNA	DEL	TT	TT	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF764	92595	ucsc.edu	37	16	30567377	30567377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	22	22	0	0	0
TGFB1I1	7041	broad.mit.edu	37	16	31488760	31488760	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	14	14	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54318528	54318528	+	Missense_Mutation	SNP	A	A	G	rs1450355		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZFHX3	463	broad.mit.edu	37	16	72821594	72821602	+	In_Frame_Del	DEL	GCCGCCGCC	GCCGCCGCC	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
RAP1GAP2	23108	bcgsc.ca	37	17	2929674	2929674	+	Silent	SNP	T	T	C	rs12941934	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PLD2	5338	broad.mit.edu	37	17	4711145	4711145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FLII	2314	bcgsc.ca	37	17	18148485	18148485	+	Silent	SNP	G	G	A	rs7498	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	112	112	0	0	0
KRT34	3885	bcgsc.ca	37	17	39535859	39535859	+	Missense_Mutation	SNP	A	A	G	rs2239710	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SPATA32	124783	ucsc.edu;bcgsc.ca	37	17	43333125	43333125	+	Missense_Mutation	SNP	C	C	T	rs11651968	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SLC26A11	284129	broad.mit.edu;bcgsc.ca	37	17	78220405	78220405	+	Silent	SNP	G	G	T	rs137973400		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	24	24	0	0	0
MOCOS	55034	hgsc.bcm.edu	37	18	33767568	33767568	+	Missense_Mutation	SNP	C	C	A	rs113873219		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	18	0	18	0	0
DSEL	92126	broad.mit.edu	37	18	65180328	65180328	+	Silent	SNP	T	T	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2	2	0	0	0
ATP9B	374868	hgsc.bcm.edu	37	18	76829525	76829525	+	Missense_Mutation	SNP	A	A	G	rs4078115		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
C19orf71	100128569	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3543552	3543552	+	Splice_Site	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF414	84330	hgsc.bcm.edu	37	19	8576670	8576670	+	Silent	SNP	C	C	T	rs7175	byfrequency;by2hit2allele;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	7	2	5	0	0
ZNF812	729648	bcgsc.ca	37	19	9801441	9801445	+	Frame_Shift_Del	DEL	CTCTC	CTCTC	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	CTCTC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KEAP1	9817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610253	10610253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	52	50	2	0	0
SMARCA4	6597	hgsc.bcm.edu	37	19	11097222	11097222	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	8	8	0	0	0
MYO9B	4650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17311225	17311225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
MAP1S	55201	hgsc.bcm.edu	37	19	17837425	17837425	+	Missense_Mutation	SNP	C	C	G	rs17710707	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	12	10	2	0	0
ZNF714	148206	hgsc.bcm.edu;broad.mit.edu	37	19	21300738	21300738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	449	12	435	2	0
LOC643669	0	broad.mit.edu	37	19	39401252	39401254	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PRX	57716	ucsc.edu;bcgsc.ca	37	19	40903238	40903238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	4	3	1	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	13	10	3	0	0
PPFIA3	8541	broad.mit.edu	37	19	49641586	49641586	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	6	6	0	0	0
NLRP9	338321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56243992	56243992	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF772	400720	bcgsc.ca	37	19	57985460	57985460	+	Missense_Mutation	SNP	T	T	A	rs2074059	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	3	3	0	0	0
NCK2	8440	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	106471685	106471685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	14	4	10	0	0
STK39	27347	broad.mit.edu;bcgsc.ca	37	2	169023910	169023910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SP5	389058	hgsc.bcm.edu	37	2	171573185	171573185	+	Silent	SNP	G	G	T	rs1134626	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179427229	179427229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
GPR55	9290	bcgsc.ca	37	2	231774844	231774844	+	Silent	SNP	G	G	A	rs2396777	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SIRPA	140885	bcgsc.ca	37	20	1895984	1895984	+	Missense_Mutation	SNP	C	C	A	rs17855615	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu	37	20	3870124	3870124	+	Missense_Mutation	SNP	G	G	C	rs3737084	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
LRRN4	164312	hgsc.bcm.edu	37	20	6033033	6033033	+	Missense_Mutation	SNP	G	G	A	rs6107751	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PLCB1	23236	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	8782728	8782728	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CST1	1469	broad.mit.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
RBM39	9584	hgsc.bcm.edu;broad.mit.edu	37	20	34292408	34292408	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	130	130	0	0	0
KIAA1755	85449	hgsc.bcm.edu	37	20	36868106	36868106	+	Missense_Mutation	SNP	G	G	A	rs11699859	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu	37	20	37377139	37377139	+	Silent	SNP	C	C	T	rs2254105	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PRODH	5625	bcgsc.ca	37	22	18912678	18912678	+	Missense_Mutation	SNP	A	A	G	rs4819756	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2	2	0	0	0
MN1	4330	hgsc.bcm.edu	37	22	28195386	28195386	+	Missense_Mutation	SNP	C	C	A	rs45589338	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	3	3	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
TRIM71	131405	broad.mit.edu	37	3	32932887	32932887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ARHGEF3	50650	bcgsc.ca	37	3	56835761	56835761	+	Silent	SNP	G	G	A	rs3732508	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	36	36	0	0	0
PXK	54899	bcgsc.ca	37	3	58382846	58382846	+	Silent	SNP	C	C	T	rs3191903	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	6	6	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
EEFSEC	60678	hgsc.bcm.edu	37	3	127872602	127872602	+	Silent	SNP	A	A	G	rs11719546	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	7	6	1	0	0
UBA5	79876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132387706	132387706	+	Silent	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	31	12	19	0	0
CRIPAK	285464	hgsc.bcm.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	12	8	4	0	0
OTOP1	133060	broad.mit.edu	37	4	4228274	4228282	+	In_Frame_Del	DEL	CCACAGCAG	CCACAGCAG	-	rs75328065	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
DRD5	1816	broad.mit.edu	37	4	9784478	9784478	+	Missense_Mutation	SNP	C	C	A	rs201762034		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
RBM47	54502	hgsc.bcm.edu	37	4	40440854	40440854	+	Silent	SNP	G	G	C	rs1052153	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FAM47E-STBD1	0	hgsc.bcm.edu;broad.mit.edu	37	4	77189842	77189842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88536953	88536953	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126408693	126408693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
INPP4B	8821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	143324112	143324112	+	Silent	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	8	2	6	0	0
SNX18	112574	hgsc.bcm.edu	37	5	53814052	53814052	+	Silent	SNP	T	T	C	rs2548615		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
ZNF474	133923	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121488085	121488085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
LMNB1	4001	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	126113295	126113297	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	AGA	AGA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SOWAHA	134548	hgsc.bcm.edu	37	5	132149684	132149684	+	Missense_Mutation	SNP	G	G	C	rs40274	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
RANBP17	64901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170640671	170640671	+	Silent	SNP	T	T	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	6	6	0	0	0
TMEM14B	81853	ucsc.edu	37	6	10756712	10756712	+	Silent	SNP	C	C	T	rs143087269	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	47	47	0	0	0
KCNK17	89822	hgsc.bcm.edu	37	6	39282036	39282036	+	Missense_Mutation	SNP	T	T	C	rs10947804	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2	0	2	0	0
HOXA9	3205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27203337	27203337	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634630	30634630	+	Silent	SNP	G	G	C	rs2529438	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	24	11	13	0	0
CHCHD2	51142	bcgsc.ca	37	7	56174228	56174228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	5	5	0	0	0
ZNF716	441234	broad.mit.edu	37	7	57528823	57528823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PION	54103	bcgsc.ca	37	7	76950699	76950699	+	Missense_Mutation	SNP	C	C	T	rs17151692	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	3	3	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241030	131241035	+	In_Frame_Del	DEL	GGCGAC	GGCGAC	-	rs11277659	alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GGCGAC	GGCGAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
CNTNAP2	26047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	146805372	146805372	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149427272	149427272	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
ABCB8	11194	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150731630	150731630	+	Silent	SNP	C	C	T	rs114212581	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	70	27	43	0	0
REEP4	80346	broad.mit.edu	37	8	21996554	21996554	+	Silent	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	25	24	1	0	0
ADAM7	8756	bcgsc.ca	37	8	24342791	24342791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
PABPC1	26986	bcgsc.ca	37	8	101730010	101730010	+	Missense_Mutation	SNP	T	T	C	rs201501488	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
EPPK1	83481	bcgsc.ca	37	8	144941419	144941419	+	Silent	SNP	C	C	T	rs12681478	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF517	340385	hgsc.bcm.edu	37	8	146033347	146033347	+	Missense_Mutation	SNP	T	T	C	rs2976653		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
DMRT2	10655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	1056586	1056586	+	Silent	SNP	A	A	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ERMP1	79956	hgsc.bcm.edu	37	9	5832728	5832728	+	Silent	SNP	G	G	C	rs1131727	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	3	1	2	0	0
OR13J1	392309	broad.mit.edu	37	9	35869801	35869801	+	Silent	SNP	G	G	A	rs150584050	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	9	8	1	0	0
PHF2	5253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96435947	96435954	+	Frame_Shift_Del	DEL	GCCTGCAG	GCCTGCAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GCCTGCAG	GCCTGCAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	113168503	113168503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	8	8	0	0	0
MIR3134	100422990	bcgsc.ca	37	9	114994300	114994300	+	RNA	DEL	A	A	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	1	0	1	0	0
TUBBP5	643224	broad.mit.edu	37	9	141069885	141069885	+	RNA	SNP	A	A	C	rs62581043	byfrequency	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	5	5	0	0	0
ND4	0	broad.mit.edu	37	MT	11825	11825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	20648	15926	4703	13	6
ND4	0	broad.mit.edu	37	MT	12113	12113	+	Missense_Mutation	SNP	G	G	A	rs28695839	bycluster;alternate_allele	TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	5099	4840	253	6	0
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	13121	13121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	2102	896	1200	5	1
ATXN3L	92552	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	13337648	13337648	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZRSR2	8233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	15821812	15821812	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
TTC3P1	286495	bcgsc.ca	37	X	74961928	74961928	+	RNA	SNP	T	T	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	22	22	0	0	0
PCDH11X	27328	bcgsc.ca	37	X	91642748	91642748	+	Silent	SNP	C	C	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
NXF4	55999	bcgsc.ca	37	X	101819124	101819124	+	RNA	SNP	G	G	C	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130218194	130218194	+	Silent	SNP	A	A	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
ZNF185	7739	hgsc.bcm.edu	37	X	152087570	152087572	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GAG	GAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
MPP1	4354	broad.mit.edu;bcgsc.ca	37	X	154014564	154014564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	40	38	2	0	0
TMLHE-AS1	100507404	broad.mit.edu	37	X	154578865	154578865	+	RNA	DEL	G	G	-	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
OR2T27	403239	bcgsc.ca	37	1	248813733	248813734	+	Frame_Shift_Ins	INS	-	-	C	rs200669807		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
KRTAP5-5	439915	hgsc.bcm.edu	37	11	1651199	1651200	+	In_Frame_Ins	INS	-	-	GGCTGTGGCTCC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
IGBP1P1	280655	broad.mit.edu	37	14	35409701	35409702	+	RNA	INS	-	-	T	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
MCC	4163	broad.mit.edu	37	5	112824048	112824049	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
HNRNPA0	10949	hgsc.bcm.edu	37	5	137089075	137089076	+	In_Frame_Ins	INS	-	-	CCG	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
LILRB1	10859	bcgsc.ca	37	19	55147987	55147988	+	Missense_Mutation	DNP	GA	GA	CC	novel		TCGA-OU-A5PI-01A-12D-A29I-10	TCGA-OU-A5PI-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	7b715e15-2bab-4f72-99f7-d12edf469822	2425af3c-c748-4bca-a898-cf31a8a91682	0	0	0	0	0
