Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
IPP	3652	bcgsc.ca	37	1	46195375	46195375	+	Missense_Mutation	SNP	T	T	C	rs28375469	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
FLG	2312	bcgsc.ca	37	1	152281479	152281479	+	Missense_Mutation	SNP	G	G	T	rs3126079	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	0	1	0	0
MAP3K8	1326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	30740635	30740635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	49951215	49951229	+	In_Frame_Del	DEL	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGGACCCTGTCAATG	GGGACCCTGTCAATG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ZCCHC24	219654	hgsc.bcm.edu	37	10	81205023	81205023	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	6	6	0	0	0
KRTAP5-3	387266	bcgsc.ca	37	11	1628992	1628992	+	Silent	SNP	G	G	A	rs60210378		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
NRXN2	9379	hgsc.bcm.edu	37	11	64480641	64480641	+	Silent	SNP	G	G	A	rs2518907		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
MEN1	4221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64574681	64574681	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
DNAJB13	374407	bcgsc.ca	37	11	73681135	73681135	+	Missense_Mutation	SNP	G	G	A	rs72982975	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
PHLDB1	23187	bcgsc.ca	37	11	118509668	118509668	+	Silent	SNP	A	A	G	rs483598	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	24	24	0	0	0
HYLS1	219844	broad.mit.edu;bcgsc.ca	37	11	125770031	125770031	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	10	10	0	0	0
BHLHE41	79365	broad.mit.edu	37	12	26275863	26275863	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	13	12	1	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52757872	52757872	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
CD63	967	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56119366	56119366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	3231	1628	1601	1	1
USP15	9958	broad.mit.edu	37	12	62777929	62777929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	20	20	0	0	0
ARL6IP4	51329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123465730	123465730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	132	122	10	0	0
PXMP2	5827	hgsc.bcm.edu	37	12	133264332	133264332	+	Silent	SNP	C	C	T	rs11538534	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	5	5	0	0	0
TPTE2P6	374491	broad.mit.edu	37	13	25168501	25168501	+	RNA	SNP	G	G	A	rs4770716	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
VWA8	23078	broad.mit.edu	37	13	42189173	42189173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	21	21	0	0	0
ING1	3621	hgsc.bcm.edu	37	13	111368316	111368316	+	Silent	SNP	C	C	T	rs9555726	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	5	2	3	0	0
TDP1	55775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90450896	90450896	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	8	2	6	0	0
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42042367	42042367	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
MFAP1	4236	bcgsc.ca	37	15	44102010	44102010	+	Silent	SNP	A	A	C	rs2228368	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	21	21	0	0	0
GOLGA6A	342096	bcgsc.ca	37	15	74364639	74364639	+	Missense_Mutation	SNP	G	G	C	rs200350318		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
E4F1	1877	broad.mit.edu	37	16	2282180	2282180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
GLIS2	84662	broad.mit.edu	37	16	4386949	4386949	+	Silent	SNP	A	A	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	31	24	5	2	0
NUDT16L1	84309	hgsc.bcm.edu	37	16	4744169	4744169	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	37	37	0	0	0
USP31	57478	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23119496	23119496	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ZNF843	283933	broad.mit.edu	37	16	31448010	31448010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
CNEP1R1	255919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50063678	50063678	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	14	14	0	0	0
CCL11	6356	broad.mit.edu;ucsc.edu	37	17	32614690	32614690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
NT5C	30833	hgsc.bcm.edu	37	17	73127683	73127683	+	Silent	SNP	T	T	C	rs4788867	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	4	0	4	0	0
SEC14L1	6397	bcgsc.ca	37	17	75190962	75190962	+	Silent	SNP	C	C	T	rs674402	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	43	43	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31324560	31324560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ARID3A	1820	hgsc.bcm.edu	37	19	929753	929753	+	Silent	SNP	A	A	G	rs1799595		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	0	1	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619333	1619333	+	Silent	SNP	G	G	A	rs1140828	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	12	12	0	0	0
TCF3	6929	hgsc.bcm.edu	37	19	1619339	1619339	+	Silent	SNP	T	T	C	rs8140	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	14	14	0	0	0
C19orf10	56005	hgsc.bcm.edu	37	19	4670313	4670313	+	Missense_Mutation	SNP	C	C	G	rs2270090	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	1	1	0	0
CLPP	8192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6364521	6364521	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	144	140	4	0	0
MCOLN1	57192	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7589911	7589911	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	79	49	28	2	0
MUC16	94025	bcgsc.ca	37	19	9075969	9075969	+	Missense_Mutation	SNP	C	C	T	rs2591593	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
OCEL1	79629	hgsc.bcm.edu	37	19	17337555	17337555	+	Silent	SNP	C	C	A	rs3745163	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	30	5	25	0	0
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22171652	22171652	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	28	28	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704002	29704002	+	Silent	SNP	T	T	C	rs11666764	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
UQCRFS1	7386	hgsc.bcm.edu	37	19	29704010	29704010	+	Missense_Mutation	SNP	A	A	C	rs8100724	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
PPP5C	5536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46857169	46857169	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	92	49	43	0	0
GLTSCR1	29998	hgsc.bcm.edu	37	19	48205288	48205288	+	Silent	SNP	G	G	A	rs8100472		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
THSD7B	80731	bcgsc.ca	37	2	137917922	137917922	+	Missense_Mutation	SNP	T	T	A	rs4954474	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
SP140	11262	broad.mit.edu	37	2	231174695	231174695	+	Silent	SNP	C	C	T	rs186449912		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	11	11	0	0	0
PYGB	5834	bcgsc.ca	37	20	25276297	25276297	+	Silent	SNP	G	G	A	rs1130694	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
LIME1	54923	bcgsc.ca	37	20	62368925	62368925	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	16	0	16	0	0
KRTAP25-1	100131902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	31661590	31661590	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46932128	46932128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	287	278	9	0	0
TNRC6B	23112	broad.mit.edu;bcgsc.ca	37	22	40657974	40657974	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
RRP7B	91695	ucsc.edu	37	22	42972614	42972614	+	RNA	SNP	T	T	C	rs2142829	bycluster;byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ZNF717	100131827	bcgsc.ca	37	3	75790860	75790860	+	Missense_Mutation	SNP	C	C	T	rs73117241		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	13	13	0	0	0
ARHGEF26	26084	bcgsc.ca	37	3	153839960	153839960	+	Missense_Mutation	SNP	T	T	C	rs12497267	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
PLCH1	23007	broad.mit.edu	37	3	155199167	155199167	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
KNG1	3827	broad.mit.edu;bcgsc.ca	37	3	186460034	186460034	+	Missense_Mutation	SNP	C	C	T	rs201737072		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
HTT	3064	broad.mit.edu	37	4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs10618869	alternate_allele	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
NMU	10874	hgsc.bcm.edu	37	4	56502304	56502304	+	Missense_Mutation	SNP	G	G	T	rs35771241		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
MAB21L2	10586	broad.mit.edu;bcgsc.ca	37	4	151504413	151504413	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
SRD5A1	6715	hgsc.bcm.edu	37	5	6633779	6633779	+	Silent	SNP	C	C	G	rs248793	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	4	0	4	0	0
LOC100131067	0	bcgsc.ca	37	5	80552652	80552652	+	RNA	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
PCDHAC1	56135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140307778	140307778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	0	1	0	0
HAVCR1	26762	broad.mit.edu	37	5	156482501	156482501	+	Silent	SNP	T	T	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
AGXT2L2	85007	hgsc.bcm.edu	37	5	177659519	177659519	+	Silent	SNP	C	C	G	rs116735771	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	14	6	8	0	0
EEF1A1	1915	ucsc.edu;bcgsc.ca	37	6	74227940	74227940	+	Silent	SNP	A	A	C	rs71481399	bycluster	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	14240	14226	4	6	4
FOXO3	2309	bcgsc.ca	37	6	108985092	108985092	+	Silent	SNP	C	C	G	rs200866771		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	11	10	1	0	0
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	147830225	147830225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
LRP11	84918	hgsc.bcm.edu	37	6	150184882	150184882	+	Missense_Mutation	SNP	G	G	C	rs9322225		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TWISTNB	221830	hgsc.bcm.edu	37	7	19748560	19748582	+	Frame_Shift_Del	DEL	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GGCAGGACGCCAGCCTGCCCTAC	GGCAGGACGCCAGCCTGCCCTAC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TWISTNB	221830	bcgsc.ca	37	7	19748562	19748582	+	In_Frame_Del	DEL	CAGGACGCCAGCCTGCCCTAC	CAGGACGCCAGCCTGCCCTAC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	CAGGACGCCAGCCTGCCCTAC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824941	20824943	+	In_Frame_Del	DEL	GCC	GCC	-	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GCC	GCC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
GPR141	353345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	37780431	37780431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
RAMP3	10268	hgsc.bcm.edu	37	7	45197433	45197433	+	Silent	SNP	G	G	A	rs67477213		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	19	9	10	0	0
ZNF713	349075	broad.mit.edu;bcgsc.ca	37	7	56006945	56006945	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	1	1	0	0	0
FAM86B3P	286042	bcgsc.ca	37	8	8092007	8092007	+	RNA	SNP	C	C	T	rs200134232		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	10	9	1	0	0
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	61769317	61769317	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143427201	143427201	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	12	6	6	0	0
SCRIB	23513	hgsc.bcm.edu	37	8	144874554	144874554	+	Silent	SNP	T	T	C	rs6991873		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	27	0	27	0	0
SLC24A2	25769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19786455	19786455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
CCDC107	203260	bcgsc.ca	37	9	35660990	35660990	+	Missense_Mutation	SNP	A	A	G	rs1339374	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	215	215	0	0	0
AQP7P1	375719	bcgsc.ca	37	9	67273568	67273568	+	RNA	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
BICD2	23299	broad.mit.edu	37	9	95526977	95526977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	20	19	1	0	0
COX1	5742	broad.mit.edu	37	MT	6087	6087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	21086	20637	435	6	8
COX1	5742	broad.mit.edu	37	MT	6931	6931	+	Missense_Mutation	SNP	G	G	A	rs28679680	bycluster	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	38703	37210	1483	4	6
ND4	0	broad.mit.edu	37	MT	10809	10809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	18200	12955	5241	3	1
ND5	0	broad.mit.edu	37	MT	12871	12871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2716	2469	245	0	2
ND5	0	broad.mit.edu;bcgsc.ca	37	MT	14071	14071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2673	2332	340	1	0
ND6	0	broad.mit.edu	37	MT	14301	14301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	3289	2773	514	2	0
TBL1X	6907	broad.mit.edu;bcgsc.ca	37	X	9656265	9656265	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	2	2	0	0	0
TCEAL6	158931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	101395946	101395946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	94	94	0	0	0
TCEAL3	85012	broad.mit.edu	37	X	102864350	102864350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	94	94	0	0	0
IRS4	8471	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	107979158	107979158	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
NDUFA1	4694	broad.mit.edu	37	X	119007288	119007288	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	627	627	0	0	0
MAGEA3	4102	bcgsc.ca	37	X	151935712	151935712	+	Missense_Mutation	SNP	C	C	A	rs61744011	byfrequency	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ESPNP	284729	broad.mit.edu	37	1	17029905	17029906	+	RNA	INS	-	-	A	rs142569124	bycluster	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
EP400	57634	hgsc.bcm.edu	37	12	132547093	132547094	+	In_Frame_Ins	INS	-	-	CAGCAGCAG	rs10902490	bycluster;by2hit2allele;byhapmap	TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26054882	26054883	+	RNA	INS	-	-	GAT	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
FAM182A	284800	broad.mit.edu	37	20	26054883	26054884	+	RNA	INS	-	-	ACG	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TWISTNB	221830	hgsc.bcm.edu;bcgsc.ca	37	7	19748559	19748560	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141070013	141070014	+	RNA	INS	-	-	GCG	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29444479	29444480	+	Splice_Site	DNP	GG	GG	TT	novel		TCGA-P6-A5OF-01A-11D-A29I-10	TCGA-P6-A5OF-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	8949a62c-41ca-4e16-94a2-348838d35055	29f21b2f-1b0d-47d0-b2c7-c423fb460fa1	0	0	0	0	0
