Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6636573	6636573	+	Silent	SNP	C	C	A	rs200570210	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12520276	12520276	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	16	12	4	0	0
CROCCP2	84809	broad.mit.edu	37	1	16945401	16945401	+	RNA	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	26	25	0	0	1
PADI2	11240	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	17418973	17418973	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	18703418	18703418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	19536671	19536671	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
HTR6	3362	hgsc.bcm.edu	37	1	20005619	20005619	+	Missense_Mutation	SNP	C	C	T	rs201375470		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
EIF4G3	8672	broad.mit.edu;bcgsc.ca	37	1	21133925	21133925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	135	128	7	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22170649	22170649	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FUCA1	2517	hgsc.bcm.edu	37	1	24194748	24194748	+	Missense_Mutation	SNP	G	G	C	rs2070956	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	2	2	0	0
MYOM3	127294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24435087	24435087	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NIPAL3	57185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24787011	24787011	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	13	1	12	0	0
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27057916	27057916	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MANEAL	149175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	38260241	38260241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39913145	39913145	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	4	3	0	0
USP24	23358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55569622	55569622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
NFIA	4774	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	61872377	61872377	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
ROR1	4919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	64515549	64515549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CTBS	1486	broad.mit.edu	37	1	85039999	85040007	+	In_Frame_Del	DEL	GCAGCGCCA	GCAGCGCCA	-	rs142534762	bycluster;by1000genomes;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91726883	91726883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
ARHGAP29	9411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94640288	94640288	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	15	15	0	0	0
CSF1	1435	broad.mit.edu	37	1	110466286	110466286	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NRAS	4893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	G	T	rs121913254	bycluster	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	28	19	9	0	0
REG4	83998	bcgsc.ca	37	1	120345707	120345719	+	Frame_Shift_Del	DEL	TTCCTCAGCTTCC	TTCCTCAGCTTCC	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	TTCCTCAGCTTCC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu	37	1	120611964	120611964	+	Missense_Mutation	SNP	G	G	C	rs11810554	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
PPIAL4G	644591	broad.mit.edu	37	1	143767524	143767524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3062	3059	2	0	1
SELENBP1	8991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151341951	151341951	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	0	6	0	0
RPTN	126638	ucsc.edu;bcgsc.ca	37	1	152128638	152128638	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPRR3	6707	ucsc.edu	37	1	152975715	152975715	+	Silent	SNP	C	C	T	rs63405761	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154306997	154306997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	0	5	0	0
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154317580	154317580	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	17	16	1	0	0
ATP8B2	57198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154321000	154321000	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	28	21	7	0	0
KCNN3	3782	bcgsc.ca	37	1	154744807	154744807	+	Silent	SNP	C	C	G	rs1051614	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NES	10763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156645093	156645093	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	21	21	0	0	0
CD1C	911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158263043	158263043	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158585167	158585167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	158614085	158614085	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DUSP27	92235	broad.mit.edu	37	1	167095023	167095023	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MROH9	80133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	170965695	170965695	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MROH9	80133	broad.mit.edu;bcgsc.ca	37	1	171033431	171033431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RC3H1	149041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173947732	173947732	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu	37	1	176659581	176659581	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM5B	57795	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177199054	177199054	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RALGPS2	55103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	178753600	178753600	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SWT1	54823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185175896	185175896	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186646005	186646005	+	Missense_Mutation	SNP	C	C	T	rs3218622	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	14	12	2	0	0
CACNA1S	779	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201027621	201027621	+	Splice_Site	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216061975	216061975	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
EPRS	2058	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	220213537	220213537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TRIM67	440730	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231344730	231344730	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TRIM67	440730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231344731	231344731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233362971	233362971	+	Splice_Site	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	237893641	237893641	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OR2G3	81469	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247769150	247769150	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OR14C36	127066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	248512629	248512629	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OR2T2	401992	broad.mit.edu	37	1	248616849	248616849	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PTER	9317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	16526726	16526726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	0	4	0	0
CUBN	8029	broad.mit.edu;mdanderson.org	37	10	16911641	16911641	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ST8SIA6	338596	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17362956	17362956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ARL5B	221079	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	18957485	18957485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
ANKRD30A	91074	bcgsc.ca	37	10	37505141	37505141	+	Missense_Mutation	SNP	G	G	A	rs1200876	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
HNRNPF	3185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43882684	43882684	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	263	161	101	0	1
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	45799844	45799844	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50172056	50172056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	55569300	55569300	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ANXA2P3	305	ucsc.edu;bcgsc.ca	37	10	66585997	66585997	+	RNA	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
STOX1	219736	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	70652486	70652486	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPOCK2	9806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	73823959	73823959	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	14	14	0	0	0
CYP2C18	1562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	96447544	96447544	+	Silent	SNP	C	C	T	rs143341184	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CPN1	1369	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	101841357	101841357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
C10orf95	79946	hgsc.bcm.edu	37	10	104210735	104210735	+	Missense_Mutation	SNP	C	C	A	rs2281878	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
GPAM	57678	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	113920464	113920464	+	Missense_Mutation	SNP	C	C	T	rs151269022	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GFRA1	2674	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	117884991	117884991	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TIAL1	7073	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	121342040	121342040	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	40	31	9	0	0
DMBT1	1755	broad.mit.edu	37	10	124361496	124361496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
LRRC27	80313	broad.mit.edu	37	10	134151173	134151173	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
GPR123	84435	hgsc.bcm.edu	37	10	134942817	134942817	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012429	+	Missense_Mutation	SNP	T	T	A	rs3008390		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1253976	1253976	+	Missense_Mutation	SNP	A	A	G	rs76956995		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KRTAP5-5	439915	bcgsc.ca	37	11	1651116	1651127	+	In_Frame_Del	DEL	GGCCGTGGCTCC	GGCCGTGGCTCC	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GGCCGTGGCTCC	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RASSF10	644943	hgsc.bcm.edu	37	11	13031288	13031288	+	Silent	SNP	C	C	T	rs61879069	bycluster;byfrequency;by1000genomes	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
INSC	387755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	15257156	15257156	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RCN1	5954	ucsc.edu	37	11	32118693	32118693	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	9	4	5	0	0
CHST1	8534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	45671302	45671302	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	12	12	0	0	0
APLNR	187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57004442	57004442	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OR9Q2	219957	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	57957980	57957980	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LPXN	9404	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58295011	58295011	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	21	16	5	0	0
PTGDR2	11251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	60620261	60620261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	0	3	0	0
SNX32	254122	bcgsc.ca	37	11	65619969	65619969	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	1	4	0	0
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	69625149	69625149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM181B	220382	hgsc.bcm.edu	37	11	82443955	82443955	+	Missense_Mutation	SNP	C	C	T	rs142346160		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	88027678	88027678	+	Splice_Site	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	1	4	0	0
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	89892474	89892474	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92498090	92498090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAT3	120114	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92534190	92534190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92592485	92592485	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu	37	11	92600345	92600345	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MTMR2	8898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	95657077	95657077	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	8	0	0	0
CEP164	22897	bcgsc.ca	37	11	117266312	117266312	+	Missense_Mutation	SNP	C	C	G	rs2305830	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	22	22	0	0	0
OR8A1	390275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	124440077	124440077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IGSF9B	22997	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133790535	133790535	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SLC2A3	6515	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	8075621	8075621	+	Splice_Site	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
A2ML1	144568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8998816	8998816	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LOC642846	0	bcgsc.ca	37	12	9446574	9446574	+	RNA	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PRB2	653247	bcgsc.ca;mdanderson.org	37	12	11546209	11546209	+	Missense_Mutation	SNP	G	G	T	rs201443552		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
BICD1	636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	32447047	32447047	+	Missense_Mutation	SNP	G	G	T	rs200890038	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	3	1	0	0
RPAP3	79657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48090102	48090102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	4	4	0	0
ACVRL1	94	ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52308267	52308267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	15	15	0	0	0
NR4A1	3164	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52449941	52449941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	26	20	6	0	0
OR10A7	121364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55615093	55615093	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NACA	4666	bcgsc.ca	37	12	57109792	57109792	+	Missense_Mutation	SNP	A	A	G	rs2958149	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
LRP1	4035	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57538799	57538799	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
TBK1	29110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64878206	64878206	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	8	0	0	0
MKRN9P	400058	bcgsc.ca	37	12	88177452	88177452	+	RNA	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109278894	109278894	+	Missense_Mutation	SNP	C	C	T	rs150448350		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SDS	10993	bcgsc.ca	37	12	113836325	113836325	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KNTC1	9735	bcgsc.ca	37	12	123105143	123105143	+	Silent	SNP	C	C	T	rs2270775	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	20625654	20625654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	12	12	0	0	0
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	23905553	23905553	+	Silent	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	28	4	24	0	0
FLT3	2322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	28623524	28623524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FREM2	341640	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39265709	39265709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
VWA8	23078	bcgsc.ca	37	13	42442546	42442546	+	Missense_Mutation	SNP	A	A	G	rs3742262	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
ZC3H13	23091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	46559801	46559801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
PCDH8	5100	hgsc.bcm.edu	37	13	53420344	53420344	+	Missense_Mutation	SNP	A	A	G	rs5030685	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MCF2L	23263	hgsc.bcm.edu	37	13	113750905	113750905	+	Missense_Mutation	SNP	C	C	G	rs140657264		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	16	8	8	0	0
ARHGEF40	55701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	21552141	21552141	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	11	10	1	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
BCL2L2-PABPN1	100529063	bcgsc.ca	37	14	23777099	23777099	+	Silent	SNP	G	G	A	rs2231301	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	17	17	0	0	0
SLC22A17	51310	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23821201	23821201	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	42360856	42360856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	1	1	0	0
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	47343286	47343286	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DACT1	51339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59113460	59113460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69676281	69676281	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100141689	100141689	+	Missense_Mutation	SNP	T	T	C	rs7158073	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TNFAIP2	7127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	103599182	103599182	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	20	20	0	0	0
AHNAK2	113146	ucsc.edu;bcgsc.ca	37	14	105416010	105416010	+	Silent	SNP	T	T	C	rs2582511	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CDCA4	55038	ucsc.edu;bcgsc.ca	37	14	105478272	105478272	+	Splice_Site	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CXADRP2	646243	bcgsc.ca	37	15	22016443	22016443	+	RNA	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM189A1	23359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29674025	29674025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NARG2	79664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60747337	60747337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	5	0	0	0
CSNK1G1	53944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	64499779	64499779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	4	3	0	0
CHRNB4	1143	broad.mit.edu	37	15	78922110	78922110	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
AGBL1	123624	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	87089286	87089286	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ADAMTS17	170691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	100649210	100649210	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CERS3	204219	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101042050	101042050	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	101523853	101523853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	1	1	0	0
CCDC154	645811	broad.mit.edu	37	16	1493909	1493909	+	Missense_Mutation	SNP	C	C	T	rs34470360	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GPRC5B	51704	broad.mit.edu	37	16	19883991	19883991	+	Silent	SNP	C	C	T	rs146958511	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	8	0	0	0
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SLC6A2	6530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	55725871	55725871	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CES1P2	0	bcgsc.ca	37	16	55783582	55783582	+	RNA	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CHST5	23563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	75563186	75563186	+	Missense_Mutation	SNP	C	C	T	rs147069503		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
PKD1L2	114780	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81232625	81232625	+	Silent	SNP	G	G	C	rs138475973	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84473062	84473062	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599659	88599659	+	Missense_Mutation	SNP	G	G	T	rs71395304	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
SPG7	6687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89598886	89598886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	23	6	17	0	0
LOC100130015	0	bcgsc.ca	37	16	90108982	90108982	+	RNA	SNP	C	C	T	rs80127288	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	5	1	0	0
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3101622	3101622	+	Silent	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MFSD6L	162387	bcgsc.ca	37	17	8701423	8701423	+	Missense_Mutation	SNP	A	A	G	rs34184531	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MFSD6L	162387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8702057	8702057	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM27L	284123	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	21826168	21826168	+	RNA	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SARM1	23098	hgsc.bcm.edu	37	17	26699121	26699121	+	Missense_Mutation	SNP	G	G	C	rs7212814		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TAOK1	57551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27869957	27869957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	0	3	0	0
C17orf96	100170841	hgsc.bcm.edu	37	17	36830562	36830562	+	Missense_Mutation	SNP	G	G	C	rs79676758		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KRTAP4-8	728224	ucsc.edu	37	17	39254054	39254054	+	Missense_Mutation	SNP	A	A	T	rs76270529		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KRTAP4-11	653240	ucsc.edu;bcgsc.ca	37	17	39274311	39274311	+	Missense_Mutation	SNP	T	T	C	rs425755		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KRTAP16-1	100505753	bcgsc.ca	37	17	39465094	39465094	+	Missense_Mutation	SNP	C	C	T	rs12453338	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KIF18B	146909	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43013674	43013674	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
RSAD1	55316	bcgsc.ca	37	17	48560839	48560839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76121282	76121282	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	7	0	0	0
ACTG1	71	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79479051	79479051	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3169	2401	764	0	4
ANKRD30B	374860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14748541	14748541	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DSG1	1828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28935166	28935166	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DSG4	147409	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	28972184	28972184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CBLN2	147381	hgsc.bcm.edu	37	18	70209321	70209321	+	Silent	SNP	C	C	A	rs7237888		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NETO1	81832	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	70532819	70532819	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
R3HDM4	91300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	901464	901464	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	50	28	22	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	17	0	17	0	0
SBNO2	22904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1112929	1112929	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	24	15	9	0	0
GIPC3	126326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3590128	3590128	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	5	0	0	0
ZFR2	23217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3834849	3834849	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
HNRNPM	4670	hgsc.bcm.edu	37	19	8551112	8551112	+	Silent	SNP	G	G	T	rs12977861	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	152	34	118	0	0
MUC16	94025	bcgsc.ca	37	19	9045821	9045821	+	Missense_Mutation	SNP	G	G	A	rs61744216	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ELOF1	84337	broad.mit.edu	37	19	11664573	11664573	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	129	127	2	0	0
ZNF440	126070	bcgsc.ca	37	19	11942771	11942771	+	Silent	SNP	G	G	A	rs436411	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
ZNF20	7568	ucsc.edu	37	19	12243997	12243997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	19	18	1	0	0
CHST8	64377	hgsc.bcm.edu;broad.mit.edu	37	19	34263233	34263233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DMKN	93099	hgsc.bcm.edu	37	19	36002394	36002405	+	In_Frame_Del	DEL	GCCACTGCTGCT	GCCACTGCTGCT	-	rs71940230	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GCCACTGCTGCT	GCCACTGCTGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
WDR62	284403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36581423	36581423	+	Splice_Site	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	0	5	0	0
TBCB	1155	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	36606495	36606495	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	111	82	29	0	0
ZNF527	84503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37879891	37879891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF793	390927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38028241	38028241	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MED29	55588	broad.mit.edu	37	19	39882259	39882259	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	6	2	0	0
FCGBP	8857	broad.mit.edu;bcgsc.ca	37	19	40433642	40433642	+	Silent	SNP	G	G	A	rs138162470	byfrequency;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CEACAM6	4680	bcgsc.ca	37	19	42260569	42260569	+	Silent	SNP	G	G	A	rs55738855		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PSG4	5672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43699273	43699273	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TEX101	83639	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43922468	43922468	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF221	7638	bcgsc.ca	37	19	44466954	44466954	+	Missense_Mutation	SNP	T	T	G	rs138913252		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF285	26974	ucsc.edu	37	19	44892206	44892206	+	Silent	SNP	C	C	A	rs73557001		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NOVA2	4858	bcgsc.ca	37	19	46443748	46443748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RASIP1	54922	hgsc.bcm.edu	37	19	49232226	49232226	+	Missense_Mutation	SNP	G	G	A	rs2287922		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	23	15	8	0	0
PIH1D1	55011	bcgsc.ca	37	19	49950298	49950298	+	Missense_Mutation	SNP	C	C	T	rs13394	bycluster;byfrequency;bysubmitter;by2hit2allele;byhapmap;by1000genomes	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	155	154	1	0	0
PIH1D1	55011	bcgsc.ca	37	19	49950356	49950356	+	Silent	SNP	C	C	G	rs12443	bycluster;byfrequency;byhapmap;by1000genomes	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	7	0	0	0
LRRC4B	94030	hgsc.bcm.edu	37	19	51021373	51021373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF83	55769	bcgsc.ca	37	19	53117531	53117531	+	Missense_Mutation	SNP	C	C	T	rs1056185	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	14	13	1	0	0
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53384618	53384618	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
YWHAQ	10971	broad.mit.edu	37	2	9731527	9731527	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21230805	21230805	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21230838	21230838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
C2orf53	339779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	27360284	27360284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ARHGEF33	100271715	hgsc.bcm.edu	37	2	39187519	39187519	+	Silent	SNP	A	A	G	rs958412		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FBXO11	80204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48035363	48035363	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	25	14	11	0	0
NAT8B	51471	bcgsc.ca	37	2	73928366	73928366	+	RNA	SNP	G	G	C	rs2012574	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TET3	200424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	74307673	74307673	+	Silent	SNP	G	G	T	rs79201046	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
REG3A	5068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	79385822	79385822	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RNF103-CHMP3	100526767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86732983	86732983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	68	59	9	0	0
MRPS9	64965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	105654560	105654560	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	2	6	0	0
SAP130	79595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	128757634	128757634	+	Silent	SNP	T	T	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RBM45	129831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178982881	178982881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	9	2	7	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179454036	179454036	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ITGA4	3676	bcgsc.ca	37	2	182395345	182395345	+	Missense_Mutation	SNP	G	G	A	rs1143676	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	18	18	0	0	0
PLCL1	5334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198948503	198948503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210650850	210650850	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DES	1674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220288498	220288498	+	Splice_Site	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220309866	220309866	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PRR21	643905	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240982312	240982312	+	Missense_Mutation	SNP	G	G	T	rs115609219	byfrequency;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SNED1	25992	broad.mit.edu	37	2	242009595	242009595	+	Missense_Mutation	SNP	G	G	C	rs200406338		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TCF15	6939	hgsc.bcm.edu	37	20	590456	590456	+	Silent	SNP	A	A	G	rs282164	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
TGM6	343641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2378567	2378567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CST1	1469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23728453	23728453	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM182B	728882	broad.mit.edu	37	20	25755510	25755510	+	RNA	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM182B	728882	ucsc.edu	37	20	25755562	25755562	+	RNA	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30433212	30433212	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FOXS1	2307	hgsc.bcm.edu	37	20	30433212	30433214	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	TAG	TAG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	30433214	30433214	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KIAA1755	85449	bcgsc.ca	37	20	36841756	36841756	+	Silent	SNP	T	T	C	rs1534967	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
WFDC10B	280664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44314620	44314620	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	11	7	4	0	0
DNTTIP1	116092	hgsc.bcm.edu	37	20	44420682	44420682	+	Silent	SNP	T	T	C	rs2664591	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	0	7	0	0
C20orf166	128826	ucsc.edu;bcgsc.ca	37	20	61150673	61150673	+	Splice_Site	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TIAM1	7074	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32624160	32624160	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CBR3	874	bcgsc.ca	37	21	37507769	37507769	+	Silent	SNP	C	C	T	rs881712	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CHAF1B	8208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37787631	37787631	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	26	14	12	0	0
TXNRD2	10587	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19870882	19870882	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	13	7	6	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780091	20780091	+	Silent	SNP	C	C	G	rs77189880	bycluster;byfrequency;by1000genomes	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu;ucsc.edu	37	22	29885594	29885594	+	Silent	SNP	A	A	T	rs79235463	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	47	47	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885599	29885604	+	In_Frame_Del	DEL	AGGAAG	AGGAAG	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
C22orf42	150297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	32550280	32550280	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	38120692	38120692	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ADSL	158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40759061	40759061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	180	78	102	0	0
C3orf20	84077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	14755626	14755626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GALNT15	117248	broad.mit.edu	37	3	16254215	16254215	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
EPM2AIP1	9852	hgsc.bcm.edu;broad.mit.edu	37	3	37034349	37034349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
GOLGA4	2803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	37367829	37367829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
ANO10	55129	broad.mit.edu	37	3	43640056	43640056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	8	0	0	0
COL7A1	1294	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48629232	48629232	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
BSN	8927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49694135	49694135	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MST1	4485	bcgsc.ca	37	3	49725034	49725034	+	Missense_Mutation	SNP	T	T	A	rs142964215	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
MST1	4485	bcgsc.ca	37	3	49725038	49725038	+	Silent	SNP	G	G	C	rs116125078	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
AMIGO3	386724	broad.mit.edu	37	3	49755684	49755684	+	Silent	SNP	T	T	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
SEMA3F	6405	bcgsc.ca	37	3	50225204	50225204	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	52	52	0	0	0
ITIH1	3697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52813596	52813596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TOMM70A	9868	hgsc.bcm.edu	37	3	100119611	100119611	+	Silent	SNP	C	C	A	rs138465118		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	2	2	0	0
CCDC54	84692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	107096669	107096669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	111760858	111760858	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ARGFX	503582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121305055	121305055	+	Missense_Mutation	SNP	C	C	T	rs144775023		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KY	339855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	134322623	134322623	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PPP2R3A	5523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	135720486	135720486	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IL20RB	53833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	136729006	136729006	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	6	0	0	0
IL20RB	53833	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	136729007	136729007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	6	0	0	0
ESYT3	83850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	138170900	138170900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SUCNR1	56670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151598373	151598373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	154056059	154056059	+	Missense_Mutation	SNP	C	C	T	rs199967865		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154890002	154890002	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PIK3CA	5290	ucsc.edu	37	3	178948054	178948054	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	21	17	4	0	0
CCDC39	339829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	180377267	180377267	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
VWA5B2	90113	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183957335	183957335	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186395283	186395283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195594805	195594805	+	Silent	SNP	A	A	G	rs1056749	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	35	20	15	0	0
IDUA	3425	broad.mit.edu	37	4	996204	996204	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	1	1	0	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044357	7044357	+	Silent	SNP	A	A	G	rs871133		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CCDC149	91050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	24821481	24821481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RHOH	399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40245456	40245456	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	57	12	45	0	0
GABRA4	2557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	46973176	46973176	+	Silent	SNP	C	C	T	rs147092196	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MUC7	4589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71346591	71346591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SHROOM3	57619	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	77699996	77699996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPARCL1	8404	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88415405	88415405	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	153	153	0	0	0
UNC5C	8633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	96123902	96123902	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114276890	114276890	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PCDH10	57575	broad.mit.edu	37	4	134073368	134073368	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ELF2	1998	hgsc.bcm.edu;bcgsc.ca	37	4	139988853	139988853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	6	0	0	0
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	163032469	163032469	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TRAPPC11	60684	bcgsc.ca	37	4	184600601	184600601	+	Silent	SNP	A	A	G	rs4241779	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	6	0	0	0
PDLIM3	27295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	186423472	186423472	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	43	39	4	0	0
TRIML2	205860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	189012733	189012733	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LRRC14B	389257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	192414	192414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	5235150	5235150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	13776728	13776728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LOC100130744	0	bcgsc.ca	37	5	14712958	14712958	+	RNA	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NPR3	4883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	32774925	32774925	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39376968	39376968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	57	57	0	0	0
HCN1	348980	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	45645525	45645525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66396385	66396385	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IQGAP2	10788	bcgsc.ca	37	5	75923285	75923285	+	Silent	SNP	C	C	T	rs2431351	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82876192	82876192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	132	116	16	0	0
ARRDC3	57561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90672527	90672527	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
ANKRD32	84250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	94031003	94031003	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	21	10	11	0	0
FAM81B	153643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	94756097	94756097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MAN2A1	4124	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109202628	109202628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	11	9	2	0	0
CAMK4	814	bcgsc.ca	37	5	110819980	110819980	+	Missense_Mutation	SNP	C	C	T	rs147516085	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118480306	118480306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ADAMTS19	171019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	128844852	128844852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
AFF4	27125	ucsc.edu;bcgsc.ca	37	5	132232076	132232076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
CXCL14	9547	broad.mit.edu;bcgsc.ca	37	5	134914182	134914182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TGFBI	7045	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	135397233	135397233	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	104	101	3	0	0
KIF20A	10112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137522995	137522995	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	47	40	7	0	0
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215326	140215326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	6	1	0	0
PCDHA11	56138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140248776	140248776	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	1	2	0	0
PCDHB5	26167	hgsc.bcm.edu	37	5	140517034	140517034	+	Missense_Mutation	SNP	C	C	A	rs139801121	byfrequency;alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	7	0	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140710303	140710303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	1	1	0	0
PCDHGB4	8641	bcgsc.ca	37	5	140767989	140767989	+	Silent	SNP	C	C	T	rs68033444	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
HDAC3	8841	bcgsc.ca	37	5	141014494	141014494	+	Silent	SNP	T	T	C	rs2530223	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	28	27	1	0	0
RBM27	54439	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145640390	145640390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	1	3	0	0
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156727750	156727750	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IL12B	3593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	158743705	158743705	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169108869	169108869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM196B	100131897	broad.mit.edu;bcgsc.ca	37	5	169309924	169309924	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ARL10	285598	hgsc.bcm.edu	37	5	175792605	175792605	+	Silent	SNP	G	G	C	rs2303667		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176721447	176721447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	3	2	0	0
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176824891	176824891	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF354B	117608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178310056	178310056	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
OR2Y1	134083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180166785	180166785	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TUBB2B	347733	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	3225064	3225064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	699	697	1	1	0
PPP1R3G	648791	hgsc.bcm.edu	37	6	5086211	5086211	+	Silent	SNP	G	G	C	rs584962		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
HIST1H2AC	8334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26124473	26124473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	8	7	1	0	0
POM121L2	94026	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	27277645	27277645	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
EHMT2	10919	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	31852525	31852525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	43	16	27	0	0
LMBRD1	55788	bcgsc.ca	37	6	70386407	70386407	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	23	23	0	0	0
MYO6	4646	broad.mit.edu;bcgsc.ca	37	6	76558188	76558188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	3	3	0	0
POPDC3	64208	bcgsc.ca	37	6	105609332	105609332	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
BVES-AS1	154442	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105614548	105614548	+	RNA	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LAMA4	3910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	112454057	112454057	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	42	42	0	0	0
KPNA5	3841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117045485	117045485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TAAR5	9038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132910201	132910201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TXLNB	167838	bcgsc.ca	37	6	139591721	139591721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	159646689	159646689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
KIF25	3834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	168439395	168439395	+	Silent	SNP	G	G	A	rs140066311		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	33	0	33	0	0
INMT-FAM188B	100526825	bcgsc.ca	37	7	30830773	30830773	+	RNA	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FAM183B	340286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38725390	38725390	+	RNA	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	5	5	0	0	0
ABCA13	154664	broad.mit.edu;bcgsc.ca	37	7	48349628	48349628	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
C7orf72	100130988	bcgsc.ca	37	7	50173777	50173777	+	Missense_Mutation	SNP	A	A	G	rs998928	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	70255109	70255109	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
AUTS2	26053	broad.mit.edu;bcgsc.ca	37	7	70255478	70255478	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	6	6	0	0	0
STAG3L1	54441	broad.mit.edu	37	7	74995878	74995879	+	RNA	DEL	AA	AA	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GRM3	2913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	86415946	86415946	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CROT	54677	broad.mit.edu	37	7	87011389	87011389	+	Splice_Site	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ABCB1	5243	broad.mit.edu;bcgsc.ca	37	7	87174241	87174241	+	Silent	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MGC72080	0	bcgsc.ca	37	7	97599237	97599237	+	RNA	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
ZAN	7455	bcgsc.ca	37	7	100350763	100350763	+	Missense_Mutation	SNP	T	T	G	rs6942733	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZAN	7455	broad.mit.edu;bcgsc.ca	37	7	100383624	100383624	+	RNA	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100680798	100680798	+	Missense_Mutation	SNP	T	T	C	rs184841146		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
VGF	7425	hgsc.bcm.edu	37	7	100807732	100807732	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	0	1	0	0
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	112724534	112724534	+	Silent	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PTPRZ1	5803	bcgsc.ca	37	7	121653379	121653379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	135287599	135287599	+	Silent	SNP	C	C	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	10	10	0	0	0
ARHGEF5	7984	bcgsc.ca	37	7	144059763	144059763	+	Missense_Mutation	SNP	A	A	G	rs201796473		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PDIA4	9601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	148702357	148702357	+	Silent	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	231	179	52	0	0
ASIC3	9311	hgsc.bcm.edu	37	7	150747958	150747958	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PTPRN2	5799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	157903544	157903544	+	Silent	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ERICH1	157697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	618622	618622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	31	16	15	0	0
MYOM2	9172	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2092872	2092872	+	Silent	SNP	C	C	T	rs202224359		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
GATA4	2626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11614477	11614477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PTK2B	2185	bcgsc.ca	37	8	27277537	27277537	+	Silent	SNP	G	G	A	rs1030526	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	3	0	0	0
SCARA3	51435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	27516477	27516477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ADAM9	8754	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	38961141	38961141	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	117	105	12	0	0
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	52321954	52321954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu	37	8	55542715	55542715	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CRISPLD1	83690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75929576	75929576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RALYL	138046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	85441789	85441789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LRRCC1	85444	broad.mit.edu;bcgsc.ca	37	8	86042180	86042180	+	Silent	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	7	5	2	0	0
RMDN1	51115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87491208	87491208	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	36	36	0	0	0
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104933928	104933928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Splice_Site	DEL	G	G	-	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	3	0	3	0	0
GPT	2875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145730650	145730650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FREM1	158326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14842602	14842602	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LOC642236	0	bcgsc.ca	37	9	68433440	68433440	+	RNA	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OSTF1	26578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	77749309	77749309	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPATA31E1	286234	broad.mit.edu;ucsc.edu	37	9	90500251	90500251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPATA31E1	286234	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90500970	90500970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
TMEM246	84302	ucsc.edu	37	9	104239304	104239304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	4	4	0	0	0
ABCA1	19	broad.mit.edu	37	9	107582280	107582280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	1	1	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	114145493	114145493	+	Silent	SNP	G	G	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PAPPA	5069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	118950234	118950234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
QSOX2	169714	bcgsc.ca	37	9	139110654	139110654	+	Silent	SNP	C	C	T	rs12684650	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PNPLA7	375775	bcgsc.ca	37	9	140392616	140392616	+	Silent	SNP	G	G	A	rs61754920	byfrequency	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
STS	412	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	7252107	7252107	+	Missense_Mutation	SNP	G	G	T	rs137853166	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	2	2	0	0	0
FAM47A	158724	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	34149725	34149725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SSX6	280657	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47972577	47972577	+	RNA	SNP	T	T	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
SPANXN5	494197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	52826338	52826338	+	Silent	SNP	A	A	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
BCYRN1	618	bcgsc.ca	37	X	70884173	70884173	+	RNA	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RBMXL3	139804	bcgsc.ca	37	X	114424148	114424148	+	Silent	SNP	G	G	A	rs62601525		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
RBMX2	51634	hgsc.bcm.edu;broad.mit.edu	37	X	129546815	129546815	+	Missense_Mutation	SNP	G	G	T	rs200680092	alternate_allele	TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	41	41	0	0	0
TFDP3	51270	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	132351890	132351890	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ZIC3	7547	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	136652203	136652203	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MAMLD1	10046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149638554	149638554	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
IGSF21	84966	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	18703304	18703305	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792735	109792736	+	In_Frame_Ins	INS	-	-	CGC	rs144034706		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
FBXL15	79176	broad.mit.edu	37	10	104182716	104182717	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
ACVR1B	91	broad.mit.edu	37	12	52345593	52345594	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu	37	3	195513387	195513388	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
PRR16	51334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	120021936	120021937	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504669	228504670	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GC	GC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
MPPED2	744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30435806	30435807	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
LONRF3	79836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118151510	118151511	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-P6-A5OG-01A-22D-A29I-10	TCGA-P6-A5OG-10A-01D-A29L-10	GG	GG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	fa967474-fe85-4bf6-886e-e3200573bb5c	129993f4-e562-43ef-ba4f-cce456e134c0	0	0	0	0	0
