Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AKR7L	246181	broad.mit.edu	37	1	19596124	19596124	+	RNA	SNP	C	C	T	rs2235794	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	41	41	0	0	0
LUZP1	7798	ucsc.edu;bcgsc.ca	37	1	23418153	23418153	+	Missense_Mutation	SNP	C	C	T	rs10799790	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OPRD1	4985	hgsc.bcm.edu	37	1	29138975	29138975	+	Missense_Mutation	SNP	G	G	T	rs1042114	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KCNQ4	9132	bcgsc.ca	37	1	41296828	41296828	+	Missense_Mutation	SNP	T	T	G	rs34287852	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
DMAP1	55929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44685739	44685739	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	37	29	8	0	0
IPP	3652	hgsc.bcm.edu;broad.mit.edu	37	1	46165768	46165768	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	6	1	0	0
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	78958569	78958569	+	Silent	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ELTD1	64123	ucsc.edu	37	1	79404917	79404917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	15	13	2	0	0
EPS8L3	79574	bcgsc.ca	37	1	110302006	110302006	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FLG	2312	ucsc.edu	37	1	152276598	152276598	+	Silent	SNP	G	G	A	rs12742178	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KIRREL	55243	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158058193	158058193	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	3	0	0	0
ATP1A4	480	broad.mit.edu;bcgsc.ca	37	1	160141212	160141212	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SLAMF6	114836	broad.mit.edu;bcgsc.ca	37	1	160460476	160460476	+	Splice_Site	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ITLN1	55600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160850441	160850441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	176564267	176564267	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TOR3A	64222	hgsc.bcm.edu	37	1	179051300	179051300	+	Missense_Mutation	SNP	T	T	C	rs2296377	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179851685	179851685	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	18	18	0	0	0
CACNA1E	777	broad.mit.edu	37	1	181745248	181745248	+	Silent	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SOX13	9580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	204093978	204093978	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KCNH1	3756	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210971042	210971042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
BPNT1	10380	ucsc.edu	37	1	220231330	220231330	+	RNA	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	18	5	13	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228504670	228504670	+	Missense_Mutation	SNP	C	C	T	rs11810627	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TSNAX-DISC1	0	bcgsc.ca	37	1	232098998	232098998	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR2M2	391194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248343508	248343508	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
PTPLA	9200	hgsc.bcm.edu	37	10	17659149	17659149	+	Missense_Mutation	SNP	C	C	G	rs7895850	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
ALOX5	240	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45878015	45878015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	6	0	0	0
OGDHL	55753	bcgsc.ca	37	10	50950976	50950976	+	Missense_Mutation	SNP	G	G	A	rs11101224	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	32	32	0	0	0
CCDC147	159686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	106214282	106214282	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111642322	111642322	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	27	20	7	0	0
MUC6	4588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1031972	1031972	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CARS	833	ucsc.edu	37	11	3028140	3028140	+	Silent	SNP	G	G	A	rs729662	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	36	36	0	0	0
OR51S1	119692	bcgsc.ca	37	11	4870298	4870298	+	Silent	SNP	T	T	G	rs11601065	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR52W1	120787	bcgsc.ca	37	11	6221214	6221214	+	Missense_Mutation	SNP	T	T	A	rs11040799	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CYB5R2	51700	bcgsc.ca	37	11	7694002	7694002	+	Missense_Mutation	SNP	G	G	A	rs61729556	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MICALCL	84953	hgsc.bcm.edu	37	11	12316389	12316389	+	Missense_Mutation	SNP	A	A	C	rs3812754		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ABCC8	6833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17485036	17485036	+	Silent	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR4B1	119765	broad.mit.edu	37	11	48238646	48238646	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944120	55944120	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
RTN3	10313	bcgsc.ca	37	11	63449125	63449125	+	Missense_Mutation	SNP	C	C	A	rs11551944	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	42	42	0	0	0
TM7SF2	7108	hgsc.bcm.edu	37	11	64880090	64880090	+	Silent	SNP	G	G	C	rs4930284		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	202	0	202	0	0
ALDH3B2	222	bcgsc.ca	37	11	67432799	67432799	+	Silent	SNP	G	G	A	rs80147122	bycluster;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MYO7A	4647	bcgsc.ca	37	11	76868372	76868372	+	Silent	SNP	T	T	C	rs762667	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR10G9	219870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123893785	123893785	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OR8G5	219865	ucsc.edu	37	11	124135619	124135619	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CCND2	894	broad.mit.edu	37	12	4409090	4409090	+	Missense_Mutation	SNP	G	G	A	rs142170178	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	62	59	3	0	0
LRRK2	120892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	40715839	40715839	+	Nonsense_Mutation	SNP	C	C	T	rs11564176	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49421629	49421629	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	4	0	0	0
TUBA1C	84790	ucsc.edu	37	12	49666152	49666152	+	Silent	SNP	G	G	A	rs199599214	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	805	320	485	0	0
KRT7	3855	hgsc.bcm.edu	37	12	52627215	52627215	+	Silent	SNP	A	A	G	rs7308888	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207603	53207603	+	Silent	SNP	A	A	G	rs7135148	bycluster;by2hit2allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KRT4	3851	bcgsc.ca	37	12	53207606	53207606	+	Silent	SNP	G	G	A	rs79164931	bycluster;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
OTOGL	283310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	80749522	80749522	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124413963	124413963	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
NCOR2	9612	bcgsc.ca	37	12	124810065	124810065	+	Silent	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	61	59	1	0	1
RIMBP2	23504	broad.mit.edu	37	12	130919325	130919325	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
EFHA1	221154	hgsc.bcm.edu	37	13	22178258	22178258	+	Silent	SNP	C	C	T	rs9509812	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	5	0	5	0	0
MEDAG	84935	hgsc.bcm.edu	37	13	31480827	31480827	+	Missense_Mutation	SNP	A	A	G	rs9531945	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
UPF3A	65110	broad.mit.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	4	0	0	0
ZNF219	51222	hgsc.bcm.edu	37	14	21560753	21560758	+	In_Frame_Del	DEL	GAGGCT	GAGGCT	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GAGGCT	GAGGCT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
AJUBA	84962	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23450590	23450590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	0	1	0	0
ADCY4	196883	broad.mit.edu	37	14	24801000	24801000	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LOC727924	0	broad.mit.edu	37	15	22332432	22332432	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LOC727924	0	broad.mit.edu	37	15	22332442	22332442	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MYEF2	50804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48460977	48460977	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	0	1	0	0
CSPG4	1464	broad.mit.edu	37	15	75981976	75981976	+	Missense_Mutation	SNP	C	C	T	rs200493777		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	4	0	0	0
SOLH	6650	hgsc.bcm.edu	37	16	599306	599306	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	22	22	0	0	0
PRSS21	10942	hgsc.bcm.edu	37	16	2867326	2867326	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MEFV	4210	hgsc.bcm.edu	37	16	3304573	3304573	+	Silent	SNP	G	G	T	rs224223	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
HS3ST2	9956	bcgsc.ca	37	16	22826339	22826339	+	Silent	SNP	A	A	G	rs208951	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
HS3ST2	9956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22826384	22826384	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
RNU6-76	100873777	bcgsc.ca	37	16	33548009	33548009	+	RNA	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SNX20	124460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50707759	50707759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	0	1	0	0
SLC7A6	9057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	68330375	68330375	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	5	2	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181855	81181855	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
ADAD2	161931	hgsc.bcm.edu	37	16	84224967	84224967	+	Missense_Mutation	SNP	G	G	A	rs8044695	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599696	88599697	+	Frame_Shift_Del	DEL	GA	GA	-	rs67549438	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599697	88599705	+	In_Frame_Del	DEL	AGCCTCTGG	AGCCTCTGG	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	AGCCTCTGG	AGCCTCTGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599701	88599701	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZFPM1	161882	hgsc.bcm.edu	37	16	88599703	88599705	+	In_Frame_Del	DEL	TGG	TGG	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	TGG	TGG	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FLJ36000	0	bcgsc.ca	37	17	21906445	21906445	+	RNA	SNP	A	A	G	rs4365334	bycluster;byfrequency;byhapmap	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
IGFBP4	3487	hgsc.bcm.edu	37	17	38600092	38600092	+	Silent	SNP	G	G	A	rs598892	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	28	15	13	0	0
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41008411	41008411	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	14	14	0	0	0
CDC27	996	bcgsc.ca	37	17	45234303	45234303	+	Missense_Mutation	SNP	G	G	C	rs200611688		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	4	0	0	0
AATK	9625	broad.mit.edu	37	17	79094110	79094110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	6	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096115	79096115	+	Missense_Mutation	SNP	C	C	T	rs61738821	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5397119	5397119	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	22	6	16	0	0
PTPRM	5797	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	8069961	8069961	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	19	18	1	0	0
MPPE1	65258	broad.mit.edu	37	18	11885772	11885772	+	Missense_Mutation	SNP	G	G	T	rs73945269	byfrequency;alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	35	35	0	0	0
DSG1	1828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	28934939	28934939	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ASXL3	80816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	31319098	31319098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TSHZ1	10194	bcgsc.ca	37	18	72998268	72998268	+	Silent	SNP	T	T	C	rs3744909	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SALL3	27164	hgsc.bcm.edu	37	18	76752545	76752545	+	Missense_Mutation	SNP	C	C	T	rs191414199		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
POLRMT	5442	broad.mit.edu	37	19	622193	622193	+	Missense_Mutation	SNP	C	C	A	rs201211645		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	28	28	0	0	0
ABCA7	10347	hgsc.bcm.edu	37	19	1065044	1065044	+	Silent	SNP	C	C	T	rs4147935	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	5	1	4	0	0
KLF16	83855	hgsc.bcm.edu	37	19	1854557	1854557	+	Silent	SNP	A	A	G	rs3746045	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	10	0	10	0	0
CACTIN	58509	hgsc.bcm.edu	37	19	3613346	3613346	+	Missense_Mutation	SNP	G	G	A	rs2074789	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9047465	9047465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CILP2	148113	hgsc.bcm.edu	37	19	19651140	19651140	+	Silent	SNP	A	A	G	rs4808970	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
RGS9BP	388531	hgsc.bcm.edu	37	19	33167455	33167455	+	Missense_Mutation	SNP	G	G	T	rs259290	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LRP3	4037	ucsc.edu	37	19	33697629	33697629	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
ZNF585B	92285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37676152	37676152	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	4	3	0	0
FBXO17	115290	hgsc.bcm.edu	37	19	39440918	39440918	+	Silent	SNP	T	T	C	rs2304117	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZFP36	7538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	39899249	39899249	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	110	110	0	0	0
ERCC2	2068	hgsc.bcm.edu	37	19	45867259	45867259	+	Missense_Mutation	SNP	C	C	T	rs1799793	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	28	1	27	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47127324	47127324	+	Silent	SNP	C	C	G	rs2229128	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ALDH16A1	126133	hgsc.bcm.edu	37	19	49964883	49964883	+	Silent	SNP	C	C	T	rs142557990		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	1	5	0	0
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	50666417	50666417	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LILRB4	11006	bcgsc.ca	37	19	55175740	55175740	+	Silent	SNP	C	C	T	rs3745871	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	6	0	0	0
TRAPPC12	51112	hgsc.bcm.edu	37	2	3391826	3391826	+	Silent	SNP	C	C	T	rs11127423		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	0	4	0	0
CMPK2	129607	hgsc.bcm.edu	37	2	7005369	7005369	+	Silent	SNP	A	A	G	rs11678810		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26540927	26540927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856389	54856389	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	6	0	0	0
TIA1	7072	broad.mit.edu	37	2	70443366	70443366	+	Silent	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	17	17	0	0	0
LRRTM4	80059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	77745739	77745739	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SOWAHC	65124	hgsc.bcm.edu	37	2	110372192	110372192	+	Silent	SNP	A	A	G	rs6594048		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
STK36	27148	bcgsc.ca	37	2	219563496	219563496	+	Silent	SNP	T	T	C	rs58753698	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	12	12	0	0	0
GAL3ST2	64090	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	242742905	242742905	+	Missense_Mutation	SNP	C	C	T	rs143165919		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29614052	29614052	+	RNA	SNP	C	C	T	rs71251755	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FAM209B	388799	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55108589	55108589	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SCARF2	91179	hgsc.bcm.edu	37	22	20780097	20780097	+	Silent	SNP	G	G	C	rs759609	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LOC96610	0	broad.mit.edu	37	22	22661378	22661378	+	RNA	SNP	T	T	C	rs76530335		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	1	2	0	0
RFPL2	10739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32589228	32589228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
APOL2	23780	bcgsc.ca	37	22	36623920	36623920	+	Missense_Mutation	SNP	G	G	A	rs7285167	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	24	24	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38122462	38122462	+	Missense_Mutation	SNP	A	A	G	rs739138	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ANKRD54	129138	broad.mit.edu	37	22	38228644	38228644	+	Silent	SNP	C	C	T	rs143173080	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SGSM3	27352	ucsc.edu	37	22	40802191	40802191	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	17	16	1	0	0
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	13368936	13368936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ACVR2B	93	broad.mit.edu	37	3	38519900	38519900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45132893	45132893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	1	0	0	0
GPX1	2876	broad.mit.edu	37	3	49395674	49395679	+	In_Frame_Del	DEL	GCCGCC	GCCGCC	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
STAB1	23166	ucsc.edu	37	3	52546452	52546452	+	Silent	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CHDH	55349	hgsc.bcm.edu	37	3	53857917	53857917	+	Missense_Mutation	SNP	T	T	G	rs9001	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550756	66550756	+	Missense_Mutation	SNP	G	G	C	rs1403625		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
LRIG1	26018	hgsc.bcm.edu	37	3	66550762	66550762	+	Missense_Mutation	SNP	G	G	C	rs1403626	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ADCY5	111	broad.mit.edu	37	3	123166708	123166708	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	3	0	0	0
TSC22D2	9819	hgsc.bcm.edu	37	3	150128392	150128392	+	Missense_Mutation	SNP	G	G	A	rs879634	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	1	2	0	0
IL1RAP	3556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190321957	190321957	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TNK2	10188	hgsc.bcm.edu	37	3	195595405	195595405	+	Silent	SNP	G	G	A	rs1056726	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	19	16	3	0	0
ZNF718	255403	bcgsc.ca	37	4	155163	155163	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	3	0	0	0
CRIPAK	285464	ucsc.edu	37	4	1388974	1388974	+	Silent	SNP	T	T	C	rs71614969	bycluster	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	23	15	8	0	0
ZFYVE28	57732	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2306391	2306391	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	4	0	0	0
FAM184B	27146	hgsc.bcm.edu	37	4	17643848	17643848	+	Missense_Mutation	SNP	G	G	A	rs2286771	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
PDGFRA	5156	bcgsc.ca	37	4	55143577	55143577	+	Silent	SNP	G	G	A	rs10028020	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SHROOM3	57619	hgsc.bcm.edu	37	4	77662309	77662309	+	Silent	SNP	C	C	T	rs344143	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537294	88537294	+	Silent	SNP	T	T	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TMEM155	132332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122681582	122681582	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SORBS2	8470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186535995	186535995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
NLN	57486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	65054536	65054536	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	6	1	0	0
PCDHB8	56128	hgsc.bcm.edu	37	5	140559493	140559493	+	Silent	SNP	C	C	T	rs34866056		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	97	78	19	0	0
PCDHB12	56124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140590650	140590650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	5	4	1	0	0
CSF1R	1436	broad.mit.edu	37	5	149441082	149441082	+	Silent	SNP	G	G	T	rs200536087		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	37	37	0	0	0
HUS1B	135458	hgsc.bcm.edu	37	6	656555	656555	+	Missense_Mutation	SNP	G	G	T	rs1766848	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FOXQ1	94234	hgsc.bcm.edu	37	6	1313078	1313078	+	Missense_Mutation	SNP	G	G	A	rs78460560		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
GCNT2	2651	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	10586905	10586905	+	Missense_Mutation	SNP	G	G	A	rs55795227		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
HIVEP1	3096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	12125518	12125518	+	Missense_Mutation	SNP	G	G	C	rs201245007	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	2	1	0	0
RANBP9	10048	bcgsc.ca	37	6	13711279	13711279	+	Silent	SNP	A	A	G	rs6905991	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	7	0	0	0
NHLRC1	378884	hgsc.bcm.edu	37	6	18122526	18122526	+	Silent	SNP	A	A	G	rs115931931	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
PEX6	5190	hgsc.bcm.edu	37	6	42946490	42946490	+	Silent	SNP	C	C	A	rs9462858	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	8	4	4	0	0
HSP90AB1	3326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44217213	44217213	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1776	1367	393	3	13
SMAP1	60682	broad.mit.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MIR548H3	100302287	bcgsc.ca	37	6	97561636	97561636	+	RNA	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
POU3F2	5454	hgsc.bcm.edu	37	6	99283376	99283376	+	Silent	SNP	T	T	G	rs195860		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ARHGAP18	93663	ucsc.edu	37	6	129959611	129959611	+	Silent	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	15	13	2	0	0
CTGF	1490	hgsc.bcm.edu	37	6	132271980	132271980	+	Silent	SNP	T	T	G	rs6934749		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	9	0	9	0	0
VNN3	55350	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	133049936	133049936	+	RNA	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FNDC1	84624	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	159652989	159652989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
SMOC2	64094	hgsc.bcm.edu;bcgsc.ca	37	6	168842113	168842113	+	Silent	SNP	T	T	G	rs73270928	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	1	1	0	0
TNRC18	84629	hgsc.bcm.edu	37	7	5427517	5427517	+	Silent	SNP	G	G	A	rs34693947	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	4	2	0	0
PMS2	5395	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6029443	6029443	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	2	2	0	0
USP42	84132	hgsc.bcm.edu	37	7	6193521	6193521	+	Missense_Mutation	SNP	G	G	C	rs61729726	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	2	2	0	0
ZNF853	54753	hgsc.bcm.edu	37	7	6662086	6662086	+	Silent	SNP	G	G	C	rs9770042	bycluster;byfrequency;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	1	0	0	0
GARS	2617	hgsc.bcm.edu	37	7	30634661	30634661	+	Missense_Mutation	SNP	C	C	G	rs1049402	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	24	0	24	0	0
POLR2J4	84820	bcgsc.ca	37	7	44006007	44006007	+	RNA	SNP	G	G	A	rs113865051	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
NRCAM	4897	bcgsc.ca	37	7	107872816	107872816	+	Silent	SNP	G	G	A	rs2072546	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	3	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241055	131241055	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
KIAA1549	57670	broad.mit.edu;bcgsc.ca	37	7	138602801	138602801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	3	0	0	0
KLRG2	346689	broad.mit.edu	37	7	139138349	139138349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ATP6V0E2	155066	hgsc.bcm.edu	37	7	149571095	149571095	+	Missense_Mutation	SNP	G	G	A	rs79377053		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	5	1	0	0
LRRC61	65999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150034045	150034045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu	37	8	8750467	8750467	+	Silent	SNP	A	A	G	rs1062988		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
XKR6	286046	broad.mit.edu	37	8	10755519	10755519	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
CDCA2	157313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25364323	25364323	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
C8orf34	116328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	69552682	69552682	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
E2F5	1875	hgsc.bcm.edu	37	8	86089787	86089787	+	Silent	SNP	C	C	G	rs12926	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	3	0	3	0	0
TRIB1	10221	hgsc.bcm.edu	37	8	126443348	126443348	+	Silent	SNP	C	C	T	rs2385113	bycluster;byfrequency;by2hit2allele;by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ST3GAL1	6482	ucsc.edu;bcgsc.ca	37	8	134474162	134474162	+	Missense_Mutation	SNP	T	T	C	rs146292003	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	7	7	0	0	0
JRK	8629	broad.mit.edu;bcgsc.ca	37	8	143746396	143746396	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ZNF696	79943	hgsc.bcm.edu	37	8	144378868	144378868	+	Silent	SNP	A	A	G	rs7386259	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	0	2	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145001784	145001784	+	Silent	SNP	A	A	G	rs3135109	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	21	0	21	0	0
BAG1	573	hgsc.bcm.edu	37	9	33264540	33264540	+	Missense_Mutation	SNP	C	C	G	rs1071545		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	58	0	58	0	0
CNTNAP3	79937	hgsc.bcm.edu	37	9	39132974	39132974	+	Silent	SNP	G	G	T	rs149597063	by1000genomes	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2	2	0	0	0
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88967902	88967902	+	Silent	SNP	A	A	T	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	6	4	2	0	0
FPGS	2356	hgsc.bcm.edu	37	9	130565267	130565267	+	Missense_Mutation	SNP	A	A	G	rs10760502	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	4	0	4	0	0
SLC2A6	11182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136338637	136338637	+	Silent	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	1	1	0	0	0
LHX3	8022	hgsc.bcm.edu	37	9	139094805	139094805	+	Silent	SNP	C	C	T	rs2274116	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
tRNA-Leu1	0	broad.mit.edu	37	MT	3239	3239	+	RNA	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	2215	228	1987	0	0
ND4	0	broad.mit.edu	37	MT	11474	11474	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	69077	67082	1971	8	16
DCAF8L2	347442	bcgsc.ca	37	X	27766776	27766776	+	Silent	SNP	G	G	A	rs45553337	byfrequency	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
GLUD2	2747	hgsc.bcm.edu	37	X	120181641	120181641	+	Missense_Mutation	SNP	G	G	A	rs191769566		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KCNN3	3782	broad.mit.edu	37	1	154842199	154842200	+	In_Frame_Ins	INS	-	-	GCTGCTGCTGCT	rs3831942	alternate_allele	TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10			-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241030	+	In_Frame_Ins	INS	-	-	GGCGAC	rs11277659		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
TTLL11	158135	hgsc.bcm.edu	37	9	124855330	124855331	+	In_Frame_Ins	INS	-	-	TGGCCT	rs201653732		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
KNDC1	85442	hgsc.bcm.edu	37	10	135012429	135012430	+	Missense_Mutation	DNP	TT	TT	AC	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	TT	TT	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
ARHGAP44	9912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	12893459	12893460	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
FSTL4	23105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	132545983	132545984	+	Missense_Mutation	DNP	CC	CC	TA	novel		TCGA-PK-A5HA-01A-11D-A29I-10	TCGA-PK-A5HA-10A-01D-A29L-10	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	b2bd7613-8a82-453c-b1d0-f0ad6fbc0766	688c5eb5-c374-4bfb-81d1-c0ba622386cf	0	0	0	0	0
