Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCC11	0	genome.wustl.edu	37	16	48204014	48204014	+	Splice_Site	SNP	A	A	C			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	16	48204014	48204014	A	C	SNP	ABCC11	ENST00000356608	human	ensembl	69_37n	-1	known	splice_site	c.3891+2	e27+2	1.000	-	-	-	no_errors	ABCC11	HGNC	ENSG00000121270	79	0	0.00	36	6	14.29	-	-	-
ARHGAP21	0	genome.wustl.edu	37	10	24923969	24923969	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	10	24923969	24923969	C	A	SNP	ARHGAP21	ENST00000396432	human	ensembl	69_37n	-1	known	missense	c.332	p.G111V	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,pfam_PDZ,superfamily_Rho_GTPase_activation_prot,superfamily_PDZ,smart_PDZ,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP21	HGNC	ENSG00000107863	127	0	0.00	200	26	11.50	-	-	-
EAF1	0	genome.wustl.edu	37	3	15469355	15469355	+	Silent	SNP	G	G	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	3	15469355	15469355	G	A	SNP	EAF1	ENST00000396842	human	ensembl	69_37n	+1	known	silent	c.69	p.E23	1.000	pfam_Tscrpt_elong_fac_Eaf_N	pfam_Tscrpt_elong_fac_Eaf_N	-	no_errors	EAF1	HGNC	ENSG00000144597	35	0	0.00	51	6	10.53	-	-	-
ENSG00000211459	0	genome.wustl.edu	37	MT	981	981	+	RNA	SNP	C	C	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	MT	981	981	C	A	SNP	ENSG00000211459	ENST00000389680	human	ensembl	69_37n	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.24	Clone_based_ensembl_gene	ENSG00000211459	16	0	0.00	42	8	16.00	-	-	-
ENSG00000244758	0	genome.wustl.edu	37	7	19834	19834	+	RNA	SNP	C	C	G			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	7	19834	19834	C	G	SNP	ENSG00000244758	ENST00000480075	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	AC093627.6	Clone_based_vega_gene	ENSG00000244758	48	0	0.00	31	6	16.22	-	-	-
FANCE	0	genome.wustl.edu	37	6	35423973	35423973	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	6	35423973	35423973	G	A	SNP	FANCE	ENST00000229769	human	ensembl	69_37n	+1	known	missense	c.698	p.R233K	0.000	NULL	pfam_Fanconi_anaemia_gr_E_prot_C	-	no_errors	FANCE	HGNC	ENSG00000112039	114	0	0.00	54	10	15.62	-	-	-
PEX11B	0	genome.wustl.edu	37	1	145522575	145522575	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	1	145522575	145522575	A	G	SNP	PEX11B	ENST00000369306	human	ensembl	69_37n	+1	known	missense	c.436	p.M146V	1.000	pfam_PEX11	pfam_PEX11	-	no_errors	PEX11B	HGNC	ENSG00000131779	145	0	0.00	80	12	13.04	-	-	-
PRAMEF7	0	genome.wustl.edu	37	1	12980232	12980232	+	Silent	SNP	G	G	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	1	12980232	12980232	G	A	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	+1	known	silent	c.1424	p.*475	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	91	0	0.00	32	4	11.11	-	-	-
RNASEH2A	0	genome.wustl.edu	37	19	12917877	12917877	+	Silent	SNP	G	G	A			TCGA-A2-A0ST-01A-12D-A099-09	TCGA-A2-A0ST-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	dd669f44-f64d-4afc-a5ac-5f7769d1db43	c807fd87-ecb7-49c7-9427-b5dd0b84bc4b	19	12917877	12917877	G	A	SNP	RNASEH2A	ENST00000221486	human	ensembl	69_37n	+1	known	silent	c.183	p.E61	1.000	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	pfam_RNase_HII/HIII_dom,superfamily_RNaseH-like_dom,tigrfam_RNase_H2_suA	-	no_errors	RNASEH2A	HGNC	ENSG00000104889	110	0	0.00	62	10	13.89	-	-	-
