Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AMOTL1	0	genome.wustl.edu	37	11	94533105	94533105	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	94533105	94533105	T	A	SNP	AMOTL1	ENST00000433060	human	ensembl	69_37n	+1	known	missense	c.749	p.L250Q	1.000	NULL	pfam_Angiomotin_C,prints_Angiomotin	-	no_errors	AMOTL1	HGNC	ENSG00000166025	37	0	0.00	10	14	58.33	-	-	-
ATP6AP1	0	genome.wustl.edu	37	X	153657488	153657488	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	153657488	153657488	C	A	SNP	ATP6AP1	ENST00000369762	human	ensembl	69_37n	+1	known	missense	c.256	p.P86T	0.983	pfam_BIG/ATPase_V1_suS1	pfam_BIG/ATPase_V1_suS1	-	no_errors	ATP6AP1	HGNC	ENSG00000071553	25	0	0.00	37	23	38.33	-	-	-
BEX4	0	genome.wustl.edu	37	X	102471238	102471238	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	102471238	102471238	G	A	SNP	BEX4	ENST00000372691	human	ensembl	69_37n	+1	known	missense	c.157	p.G53R	0.000	pfam_TF_A-like/BEX-like,pirsf_BEX	pfam_TF_A-like/BEX-like,pirsf_BEX	-	no_errors	BEX4	HGNC	ENSG00000102409	48	0	0.00	48	31	39.24	-	-	-
CIDEB	0	genome.wustl.edu	37	14	24775709	24775710	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775709	24775710	-	T	INS	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	frame_shift_ins	c.207_206	p.N70fs	0.974:1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	84	0	0.00	126	29	18.71	-	-	-
CIDEB	0	genome.wustl.edu	37	14	24775714	24775714	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775714	24775714	G	C	SNP	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	missense	c.202	p.L68V	1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	89	0	0.00	121	27	18.24	-	-	-
CIDEB	0	genome.wustl.edu	37	14	24775715	24775715	+	Silent	SNP	T	T	C			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	24775715	24775715	T	C	SNP	CIDEB	ENST00000258807	human	ensembl	69_37n	-1	known	silent	c.201	p.L67	1.000	pfam_CAD,smart_CAD,pfscan_CAD	pfam_CAD,smart_CAD,pfscan_CAD	-	no_errors	CIDEB	HGNC	ENSG00000136305	87	0	0.00	120	24	16.67	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130159404	130159407	+	Frame_Shift_Del	DEL	CTAT	CTAT	-			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	CTAT	CTAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	130159404	130159407	CTAT	-	DEL	COL6A5	ENST00000265379	human	ensembl	69_37n	+1	known	frame_shift_del	c.6222_6225	p.Y2075fs	0.000:0.000:0.004:0.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	78	0	0.00	83	45	35.16	-	-	-
ETV5	0	genome.wustl.edu	37	3	185783693	185783693	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	3	185783693	185783693	A	T	SNP	ETV5	ENST00000537818	human	ensembl	69_37n	-1	known	missense	c.945	p.H315Q	0.076	pfam_ETS_PEA3_N	pfam_ETS_PEA3_N,pfam_Ets,smart_Ets,pfscan_Ets,prints_Ets	-	no_errors	ETV5	HGNC	ENSG00000244405	38	0	0.00	47	22	31.43	-	-	-
FAN1	0	genome.wustl.edu	37	15	31206233	31206233	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	31206233	31206233	T	A	SNP	FAN1	ENST00000362065	human	ensembl	69_37n	+1	known	missense	c.1750	p.F584I	1.000	NULL	pfam_VRR_NUC,smart_Znf_Rad18_put	-	no_errors	FAN1	HGNC	ENSG00000198690	42	0	0.00	124	63	33.69	-	-	-
FOXD4L3	0	genome.wustl.edu	37	9	70918829	70918829	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	70918829	70918829	A	T	SNP	FOXD4L3	ENST00000342833	human	ensembl	69_37n	+1	known	missense	c.962	p.D321V	0.110	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXD4L3	HGNC	ENSG00000187559	38	0	0.00	23	10	30.30	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	23685826	23685828	TCT	-	DEL	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	in_frame_del	c.1796_1794	p.E598in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	11	0	0.00	24	12	33.33	-	-	-
HNRNPUL2	0	genome.wustl.edu	37	11	62487502	62487502	+	Silent	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	62487502	62487502	C	T	SNP	HNRNPUL2	ENST00000301785	human	ensembl	69_37n	-1	known	silent	c.1773	p.E591	1.000	pfam_Chromatin_KTI12	pfam_SPRY_rcpt,pfam_SAP_DNA-bd,pfam_Zeta_toxin_domain,pfam_Chromatin_KTI12,superfamily_ConA-like_lec_gl,smart_SAP_DNA-bd,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_SAP_DNA-bd	-	no_errors	HNRNPUL2	HGNC	ENSG00000214753	147	0	0.00	129	397	75.33	-	-	-
IBTK	0	genome.wustl.edu	37	6	82924534	82924534	+	Silent	SNP	A	A	G			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	82924534	82924534	A	G	SNP	IBTK	ENST00000306270	human	ensembl	69_37n	-1	known	silent	c.1614	p.I538	1.000	superfamily_BTB/POZ_fold	pfam_Reg_chr_condens,pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like,pfscan_Reg_chr_condens	-	no_errors	IBTK	HGNC	ENSG00000005700	31	0	0.00	34	22	39.29	-	-	-
ITGA4	0	genome.wustl.edu	37	2	182339788	182339788	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	182339788	182339788	A	G	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	+1	known	missense	c.421	p.I141V	0.138	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	73	0	0.00	76	39	33.91	-	-	-
KDM2A	0	genome.wustl.edu	37	11	66995613	66995613	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	66995613	66995613	C	T	SNP	KDM2A	ENST00000529006	human	ensembl	69_37n	+1	known	nonsense	c.1063	p.Q355*	1.000	NULL	pfam_Znf_CXXC,pfam_F-box_dom_cyclin-like,pfam_JmjC_dom,superfamily_Znf_FYVE_PHD,smart_JmjC_dom,smart_Znf_PHD,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_Znf_CXXC	-	no_errors	KDM2A	HGNC	ENSG00000173120	58	0	0.00	134	266	66.33	-	-	-
LOC100288346	0	genome.wustl.edu	37	11	113140924	113140924	+	Splice_Site	SNP	A	A	C			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	113140924	113140924	A	C	SNP	LOC100288346	ENST00000533638	human	ensembl	69_37n	-1	putative	splice_site	c.NULL	NULL	0.954	-	-	-	no_errors	RP11-839D17.2	Clone_based_vega_gene	ENSG00000227487	60	0	0.00	43	16	26.67	-	-	-
LRP1	0	genome.wustl.edu	37	12	57589072	57589072	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	12	57589072	57589072	C	T	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	+1	known	missense	c.8327	p.P2776L	1.000	pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	20	0	0.00	37	28	43.08	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12016616	12016616	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	17	12016616	12016616	G	T	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.785	p.S262I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	67	0	0.00	18	30	62.50	-	-	-
MCM9	0	genome.wustl.edu	37	6	119245057	119245057	+	Silent	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	119245057	119245057	G	A	SNP	MCM9	ENST00000316316	human	ensembl	69_37n	-1	known	silent	c.540	p.S180	0.625	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,smart_AAA+_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM9	HGNC	ENSG00000111877	44	0	0.00	73	43	37.07	-	-	-
MYO6	0	genome.wustl.edu	37	6	76538265	76538265	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	76538265	76538265	A	T	SNP	MYO6	ENST00000369981	human	ensembl	69_37n	+1	known	missense	c.196	p.M66L	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO6	HGNC	ENSG00000196586	197	0	0.00	114	59	34.10	-	-	-
MYOF	0	genome.wustl.edu	37	10	95085598	95085598	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	10	95085598	95085598	C	T	SNP	MYOF	ENST00000463743	human	ensembl	69_37n	-1	known	missense	c.3437	p.S1146N	1.000	NULL	pfam_Ferlin_B-domain,pfam_C2_Ca-dep,pfam_Ferlin_A-domain,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Peroxin/Ferlin,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MYOF	HGNC	ENSG00000138119	100	0	0.00	61	56	47.86	-	-	-
OBP2B	0	genome.wustl.edu	37	9	136083528	136083528	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	136083528	136083528	T	A	SNP	OBP2B	ENST00000372034	human	ensembl	69_37n	-1	known	missense	c.269	p.Y90F	0.224	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,prints_von_Ebner_gland,prints_PstgldnD_synth	-	no_errors	OBP2B	HGNC	ENSG00000171102	35	0	0.00	32	5	13.51	-	-	-
OR52B4	0	genome.wustl.edu	37	11	4389301	4389301	+	Silent	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	4389301	4389301	G	A	SNP	OR52B4	ENST00000408920	human	ensembl	69_37n	-1	known	silent	c.225	p.L75	0.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR52B4	HGNC	ENSG00000221996	182	0	0.00	82	53	39.26	-	-	-
POM121	0	genome.wustl.edu	37	7	72413443	72413443	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	7	72413443	72413443	G	A	SNP	POM121	ENST00000434423	human	ensembl	69_37n	+1	known	missense	c.2911	p.A971T	0.007	NULL	NULL	-	no_errors	POM121	HGNC	ENSG00000196313	17	0	0.00	42	16	27.59	-	-	-
PPARGC1A	0	genome.wustl.edu	37	4	23816043	23816043	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	23816043	23816043	A	T	SNP	PPARGC1A	ENST00000264867	human	ensembl	69_37n	-1	known	missense	c.1063	p.Y355N	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	PPARGC1A	HGNC	ENSG00000109819	90	0	0.00	80	53	39.55	-	-	-
PRDX5	0	genome.wustl.edu	37	11	64087239	64087239	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	11	64087239	64087239	G	A	SNP	PRDX5	ENST00000265462	human	ensembl	69_37n	+1	known	missense	c.205	p.E69K	1.000	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	pfam_Redoxin,pfam_AhpC/TSA,superfamily_Thioredoxin-like_fold	-	no_errors	PRDX5	HGNC	ENSG00000126432	23	0	0.00	46	118	71.52	-	-	-
RET	0	genome.wustl.edu	37	10	43613868	43613868	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	10	43613868	43613868	G	A	SNP	RET	ENST00000355710	human	ensembl	69_37n	+1	known	missense	c.2332	p.V778I	1.000	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	21	0	0.00	32	20	38.46	-	-	-
RXRA	0	genome.wustl.edu	37	9	137309085	137309085	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	9	137309085	137309085	C	T	SNP	RXRA	ENST00000481739	human	ensembl	69_37n	+1	known	missense	c.692	p.P231L	1.000	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF,prints_Retinoic_acid_rcpt	-	no_errors	RXRA	HGNC	ENSG00000186350	22	0	0.00	36	27	42.86	-	-	-
S100P	0	genome.wustl.edu	37	4	6695772	6695774	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	4	6695772	6695774	AGA	-	DEL	S100P	ENST00000296370	human	ensembl	69_37n	+1	known	in_frame_del	c.113_115	p.K39in_frame_del	0.995:0.995:0.994	pfam_S100_Ca-bd_sub	pfam_S100_Ca-bd_sub,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	S100P	HGNC	ENSG00000163993	18	0	0.00	23	9	28.12	-	-	-
SERPINA12	0	genome.wustl.edu	37	14	94964133	94964133	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	14	94964133	94964133	A	G	SNP	SERPINA12	ENST00000341228	human	ensembl	69_37n	-1	known	missense	c.602	p.V201A	0.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA12	HGNC	ENSG00000165953	75	0	0.00	60	36	37.50	-	-	-
SH3BGRL	0	genome.wustl.edu	37	X	80552725	80552725	+	Silent	SNP	G	G	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	80552725	80552725	G	A	SNP	SH3BGRL	ENST00000373212	human	ensembl	69_37n	+1	known	silent	c.344	p.*115	0.982	NULL	pfam_Glut_rich_SH3-bd,superfamily_Thioredoxin-like_fold	-	no_errors	SH3BGRL	HGNC	ENSG00000131171	163	0	0.00	75	55	42.31	-	-	-
SLC22A16	0	genome.wustl.edu	37	6	110763635	110763635	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	6	110763635	110763635	C	A	SNP	SLC22A16	ENST00000368919	human	ensembl	69_37n	-1	known	missense	c.995	p.G332V	0.000	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A16	HGNC	ENSG00000004809	123	0	0.00	55	40	42.11	-	-	-
SLC9A4	0	genome.wustl.edu	37	2	103095467	103095467	+	Silent	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	2	103095467	103095467	C	T	SNP	SLC9A4	ENST00000295269	human	ensembl	69_37n	+1	known	silent	c.426	p.G142	0.002	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_NaH_exchanger,prints_Na/H_exchanger_2,tigrfam_NaH_exchanger	-	no_errors	SLC9A4	HGNC	ENSG00000180251	85	0	0.00	44	21	32.31	-	-	-
SPATA21	0	genome.wustl.edu	37	1	16730302	16730302	+	Silent	SNP	G	G	C			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	16730302	16730302	G	C	SNP	SPATA21	ENST00000335496	human	ensembl	69_37n	-1	known	silent	c.921	p.P307	0.995	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	SPATA21	HGNC	ENSG00000187144	46	0	0.00	58	25	30.12	-	-	-
USP8	0	genome.wustl.edu	37	15	50769138	50769138	+	Silent	SNP	T	T	C			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	15	50769138	50769138	T	C	SNP	USP8	ENST00000307179	human	ensembl	69_37n	+1	known	silent	c.942	p.N314	1.000	superfamily_Rhodanese-like_dom	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	67	0	0.00	95	36	27.48	-	-	-
VCX3B	0	genome.wustl.edu	37	X	8433833	8433833	+	Silent	SNP	C	C	T			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	X	8433833	8433833	C	T	SNP	VCX3B	ENST00000444481	human	ensembl	69_37n	+1	known	silent	c.150	p.R50	0.000	NULL	NULL	-	no_errors	VCX3B	HGNC	ENSG00000205642	8	0	0.00	102	50	32.89	-	-	-
YBX1	0	genome.wustl.edu	37	1	43166508	43166508	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A1G4-01A-11D-A13L-09	TCGA-A2-A1G4-10A-01W-A14R-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	420a4771-6376-4b52-a2e3-e62aaf4d4ed6	e8a9a187-4df7-41af-b0aa-389e4319b9ab	1	43166508	43166508	A	G	SNP	YBX1	ENST00000321358	human	ensembl	69_37n	+1	known	missense	c.797	p.N266S	1.000	NULL	pfam_CSP_DNA-bd,superfamily_NA-bd_OB-fold-like,smart_Cold_shock_prot,prints_CSP_DNA-bd	-	no_errors	YBX1	HGNC	ENSG00000065978	39	0	0.00	39	26	40.00	-	-	-
