Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF2	0	genome.wustl.edu	37	X	148039966	148039966	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	148039966	148039966	C	T	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	+1	known	missense	c.2668	p.H890Y	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	84	0	0.00	102	29	22.14	-	-	-
CEP70	0	genome.wustl.edu	37	3	138290122	138290122	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	138290122	138290122	C	T	SNP	CEP70	ENST00000264982	human	ensembl	69_37n	-1	known	missense	c.146	p.R49K	0.700	NULL	pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	CEP70	HGNC	ENSG00000114107	55	0	0.00	75	17	18.48	-	-	-
EP400	0	genome.wustl.edu	37	12	132547138	132547138	+	Silent	SNP	A	A	G			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	12	132547138	132547138	A	G	SNP	EP400	ENST00000333577	human	ensembl	69_37n	+1	known	silent	c.8334	p.Q2778	0.021	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,superfamily_Homeodomain-like,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Myb-like_dom,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	EP400	HGNC	ENSG00000183495	12	0	0.00	32	8	20.00	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	38	0	0.00	30	11	26.83	-	-	-
GPR110	0	genome.wustl.edu	37	6	46976736	46976736	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	6	46976736	46976736	A	C	SNP	GPR110	ENST00000371253	human	ensembl	69_37n	-1	known	missense	c.2435	p.V812G	0.452	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_SEA,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_Ig-hepta_rcpt	-	no_errors	GPR110	HGNC	ENSG00000153292	31	0	0.00	44	6	11.76	-	-	-
ILF3	0	genome.wustl.edu	37	19	10781834	10781834	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	10781834	10781834	A	G	SNP	ILF3	ENST00000449870	human	ensembl	69_37n	+1	known	missense	c.188	p.D63G	0.137	NULL	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	31	0	0.00	55	16	22.54	-	-	-
LINC00521	0	genome.wustl.edu	37	14	94464432	94464432	+	RNA	SNP	A	A	G			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	14	94464432	94464432	A	G	SNP	LINC00521	ENST00000314629	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.099	-	-	-	no_errors	LINC00521	HGNC	ENSG00000175699	8	0	0.00	16	11	39.29	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56184093	56184093	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	5	56184093	56184093	G	C	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	missense	c.4298	p.W1433S	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	156	0	0.00	192	39	16.88	-	-	-
MLL3	0	genome.wustl.edu	37	7	152027750	152027750	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	7	152027750	152027750	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.325	p.Q109*	0.994	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	157	0	0.00	153	49	24.26	-	-	-
OSBPL11	0	genome.wustl.edu	37	3	125297815	125297815	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	3	125297815	125297815	C	G	SNP	OSBPL11	ENST00000296220	human	ensembl	69_37n	-1	known	missense	c.478	p.A160P	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL11	HGNC	ENSG00000144909	93	0	0.00	82	21	20.39	-	-	-
PLXNA3	0	genome.wustl.edu	37	X	153696522	153696522	+	Silent	SNP	G	G	T			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	X	153696522	153696522	G	T	SNP	PLXNA3	ENST00000369682	human	ensembl	69_37n	+1	known	silent	c.3918	p.V1306	1.000	pfam_Plexin_cytoplasmic_RasGAP_dom	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Semaphorin/CD100_Ag,pfam_IPT_TIG_rcpt,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNA3	HGNC	ENSG00000130827	39	0	0.00	22	6	21.43	-	-	-
PTPRQ	0	genome.wustl.edu	37	12	80928679	80928679	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	12	80928679	80928679	G	C	SNP	PTPRQ	ENST00000266688	human	ensembl	69_37n	+1	known	missense	c.2836	p.D946H	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRQ	HGNC	ENSG00000139304	65	0	0.00	56	15	21.13	-	-	-
RPS5	0	genome.wustl.edu	37	19	58904526	58904526	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	19	58904526	58904526	G	A	SNP	RPS5	ENST00000196551	human	ensembl	69_37n	+1	known	missense	c.292	p.E98K	1.000	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	pfam_Ribosomal_S7_dom,superfamily_Ribosomal_S7_dom,tigrfam_Ribosomal_S5/S7_euk/arc	-	no_errors	RPS5	HGNC	ENSG00000083845	42	0	0.00	41	10	19.61	-	-	-
SLC4A10	0	genome.wustl.edu	37	2	162815009	162815009	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	2	162815009	162815009	C	T	SNP	SLC4A10	ENST00000446997	human	ensembl	69_37n	+1	known	missense	c.2806	p.P936S	1.000	pfam_HCO3_transpt_C,tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A10	HGNC	ENSG00000144290	265	0	0.00	243	64	20.71	-	-	-
WDR72	0	genome.wustl.edu	37	15	54025259	54025259	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	15	54025259	54025259	G	A	SNP	WDR72	ENST00000360509	human	ensembl	69_37n	-1	known	nonsense	c.88	p.R30*	0.928	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR72	HGNC	ENSG00000166415	32	0	0.00	59	16	21.33	-	-	-
ZHX2	0	genome.wustl.edu	37	8	123964746	123964746	+	Silent	SNP	G	G	A			TCGA-A2-A259-01A-11D-A16D-09	TCGA-A2-A259-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	93febb0a-587c-47f2-9a59-117f7aa475c5	492d903f-0464-44a3-8984-39b13c6fbcf7	8	123964746	123964746	G	A	SNP	ZHX2	ENST00000314393	human	ensembl	69_37n	+1	known	silent	c.996	p.K332	1.000	superfamily_Homeodomain-like	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZHX2	HGNC	ENSG00000178764	25	0	0.00	19	37	66.07	-	-	-
