Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACTN1	0	genome.wustl.edu	37	14	69349628	69349628	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	14	69349628	69349628	T	C	SNP	ACTN1	ENST00000394419	human	ensembl	69_37n	-1	known	missense	c.1780	p.T594A	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_EF-hand_Ca_insen,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	ACTN1	HGNC	ENSG00000072110	137	0	0.00	116	39	25.16	-	-	-
ADCK5	0	genome.wustl.edu	37	8	145616200	145616200	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	8	145616200	145616200	T	C	SNP	ADCK5	ENST00000308860	human	ensembl	69_37n	+1	known	missense	c.487	p.Y163H	1.000	NULL	pfam_UbiB_dom,superfamily_Kinase-like_dom	-	no_errors	ADCK5	HGNC	ENSG00000173137	57	0	0.00	44	20	31.25	-	-	-
ALMS1	0	genome.wustl.edu	37	2	73717262	73717262	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	73717262	73717262	A	G	SNP	ALMS1	ENST00000264448	human	ensembl	69_37n	+1	known	missense	c.8173	p.I2725V	0.992	NULL	NULL	-	no_errors	ALMS1	HGNC	ENSG00000116127	67	0	0.00	40	22	35.48	-	-	-
AOAH	0	genome.wustl.edu	37	7	36554094	36554095	+	Frame_Shift_Del	DEL	CG	CG	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	7	36554094	36554095	CG	-	DEL	AOAH	ENST00000431169	human	ensembl	69_37n	-1	putative	frame_shift_del	c.1702_1701	p.C567fs	0.000:0.000	NULL	pfam_Lipase_GDSL,pfam_SapB_2,superfamily_Saposin-like,superfamily_Esterase_SGNH_hydro-type,smart_SaposinB,pfscan_SaposinB	-	no_errors	AOAH	HGNC	ENSG00000136250	134	0	0.00	119	50	29.07	-	-	-
C1orf167	0	genome.wustl.edu	37	1	11826918	11826918	+	RNA	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	11826918	11826918	C	A	SNP	C1orf167	ENST00000484153	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	C1orf167	HGNC	ENSG00000215910	38	0	0.00	29	8	21.62	-	-	-
CABYR	0	genome.wustl.edu	37	18	21739776	21739776	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	18	21739776	21739776	A	C	SNP	CABYR	ENST00000399496	human	ensembl	69_37n	+1	known	missense	c.882	p.Q294H	1.000	NULL	pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b	-	no_errors	CABYR	HGNC	ENSG00000154040	98	0	0.00	63	27	30.00	-	-	-
CCT7	0	genome.wustl.edu	37	2	73476273	73476273	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	73476273	73476273	G	C	SNP	CCT7	ENST00000258091	human	ensembl	69_37n	+1	known	missense	c.938	p.R313P	1.000	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,tigrfam_Chap_CCT_eta	pfam_Cpn60/TCP-1,superfamily_Cpn60/TCP-1,prints_Chaperone_TCP-1,prints_Chaprnin_Cpn60,tigrfam_Chap_CCT_eta	-	no_errors	CCT7	HGNC	ENSG00000135624	73	0	0.00	60	33	35.48	-	-	-
CFB	0	genome.wustl.edu	37	6	31916210	31916210	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	31916210	31916210	A	T	SNP	CFB	ENST00000556679	human	ensembl	69_37n	+1	known	missense	c.2463	p.K821N	0.002	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_Peptidase_S1_S6,pfam_VWF_A,pfam_Sushi_SCR_CCP,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,smart_VWF_A,smart_Peptidase_S1_S6,pfscan_Sushi_SCR_CCP,pfscan_VWF_A,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	CFB	HGNC	ENSG00000243649	89	0	0.00	110	30	21.43	-	-	-
CLCNKA	0	genome.wustl.edu	37	1	16350315	16350315	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	16350315	16350315	C	T	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	+1	known	nonsense	c.121	p.Q41*	0.936	superfamily_Cl-channel_core	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	119	0	0.00	129	24	15.69	-	-	-
CLSTN1	0	genome.wustl.edu	37	1	9801173	9801173	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	9801173	9801173	C	T	SNP	CLSTN1	ENST00000377298	human	ensembl	69_37n	-1	known	missense	c.1498	p.V500M	1.000	superfamily_ConA-like_lec_gl	pfam_Cadherin,superfamily_ConA-like_lec_gl,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CLSTN1	HGNC	ENSG00000171603	66	0	0.00	41	30	42.25	-	-	-
COL5A1	0	genome.wustl.edu	37	9	137710523	137710523	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	137710523	137710523	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	+1	known	missense	c.4252	p.P1418S	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	73	0	0.00	72	13	15.29	-	-	-
DGCR6	0	genome.wustl.edu	37	22	18899484	18899484	+	RNA	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	22	18899484	18899484	G	A	SNP	DGCR6	ENST00000436645	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DGCR6	HGNC	ENSG00000183628	8	0	0.00	7	6	46.15	-	-	-
DST	0	genome.wustl.edu	37	6	56473029	56473029	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	56473029	56473029	T	A	SNP	DST	ENST00000370754	human	ensembl	69_37n	-1	known	missense	c.6298	p.N2100Y	0.034	superfamily_ABC_transptrTM_dom_typ1,smart_Plectin_repeat	pfam_Spectrin_repeat,pfam_Plectin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_Plectin_repeat,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	DST	HGNC	ENSG00000151914	27	0	0.00	46	9	16.36	-	-	-
EEF1DP3	0	genome.wustl.edu	37	13	32527133	32527133	+	RNA	SNP	T	T	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	13	32527133	32527133	T	C	SNP	EEF1DP3	ENST00000428783	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	EEF1DP3	HGNC	ENSG00000229715	63	0	0.00	54	35	39.33	-	-	-
EMX2	0	genome.wustl.edu	37	10	119307895	119307895	+	RNA	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	10	119307895	119307895	G	A	SNP	EMX2	ENST00000442245	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.274	-	-	-	no_errors	EMX2	HGNC	ENSG00000170370	45	0	0.00	34	11	24.44	-	-	-
EPS15L1	0	genome.wustl.edu	37	19	16528437	16528437	+	Silent	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	16528437	16528437	G	A	SNP	EPS15L1	ENST00000455140	human	ensembl	69_37n	-1	known	silent	c.1119	p.G373	0.151	NULL	superfamily_Prefoldin,smart_EPS15_homology,smart_EF_hand_Ca-bd,smart_Ubiquitin-int_motif,pfscan_EF_HAND_2,pfscan_EPS15_homology,pfscan_Ubiquitin-int_motif	-	no_errors	EPS15L1	HGNC	ENSG00000127527	53	0	0.00	41	20	32.79	-	-	-
ERBB2	0	genome.wustl.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	37868208	37868208	C	T	SNP	ERBB2	ENST00000269571	human	ensembl	69_37n	+1	known	missense	c.929	p.S310F	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB2	HGNC	ENSG00000141736	88	0	0.00	74	148	66.67	-	-	-
ERBB3	0	genome.wustl.edu	37	12	56481922	56481922	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	56481922	56481922	G	A	SNP	ERBB3	ENST00000267101	human	ensembl	69_37n	+1	known	missense	c.850	p.G284R	1.000	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Furin-like_Cys-rich_dom,superfamily_Growth_fac_rcpt	pirsf_Tyr_kinase_EGF/ERB/XmrK_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Furin-like_Cys-rich_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,smart_Furin_repeat,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	ERBB3	HGNC	ENSG00000065361	29	0	0.00	20	21	51.22	-	-	-
FBRS	0	genome.wustl.edu	37	16	30678913	30678913	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	30678913	30678913	G	T	SNP	FBRS	ENST00000356166	human	ensembl	69_37n	+1	known	nonsense	c.2044	p.G682*	1.000	NULL	prints_AUTS2	-	no_errors	FBRS	HGNC	ENSG00000156860	74	0	0.00	65	23	26.14	-	-	-
GPR137C	0	genome.wustl.edu	37	14	53098909	53098909	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	14	53098909	53098909	G	A	SNP	GPR137C	ENST00000321662	human	ensembl	69_37n	+1	known	missense	c.749	p.G250D	1.000	NULL	NULL	-	no_errors	GPR137C	HGNC	ENSG00000180998	61	0	0.00	63	22	25.88	-	-	-
IFNA10	0	genome.wustl.edu	37	9	21206881	21206881	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	21206881	21206881	C	-	DEL	IFNA10	ENST00000357374	human	ensembl	69_37n	-1	known	frame_shift_del	c.216	p.K73fs	0.624	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA10	HGNC	ENSG00000186803	146	0	0.00	48	48	47.52	-	-	-
KRT17P2	0	genome.wustl.edu	37	17	18333915	18333915	+	RNA	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	18333915	18333915	C	T	SNP	KRT17P2	ENST00000326333	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	KRT17P2	HGNC	ENSG00000186831	50	0	0.00	21	4	16.00	-	-	-
KRTAP15-1	0	genome.wustl.edu	37	21	31812899	31812899	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	21	31812899	31812899	G	T	SNP	KRTAP15-1	ENST00000334067	human	ensembl	69_37n	+1	known	missense	c.254	p.S85I	0.000	pfam_PMG	pfam_PMG	-	no_errors	KRTAP15-1	HGNC	ENSG00000186970	71	0	0.00	55	20	26.67	-	-	-
LDHD	0	genome.wustl.edu	37	16	75146546	75146546	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	75146546	75146546	C	A	SNP	LDHD	ENST00000300051	human	ensembl	69_37n	-1	known	missense	c.1312	p.A438S	0.000	pfam_FAD-linked_oxidase_C,superfamily_FAD-linked_Oxase-like_C	pfam_FAD-linked_oxidase_C,pfam_Oxid_FAD_bind_N,superfamily_FAD-linked_Oxase-like_C,superfamily_FAD-bd_2	-	no_errors	LDHD	HGNC	ENSG00000166816	53	0	0.00	60	22	26.83	-	-	-
LRRC41	0	genome.wustl.edu	37	1	46751042	46751042	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	46751042	46751042	G	A	SNP	LRRC41	ENST00000343304	human	ensembl	69_37n	-1	known	missense	c.1487	p.S496F	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC41	HGNC	ENSG00000132128	58	0	0.00	38	20	34.48	-	-	-
MAF	0	genome.wustl.edu	37	16	79632803	79632803	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	16	79632803	79632803	C	A	SNP	MAF	ENST00000326043	human	ensembl	69_37n	-1	known	nonsense	c.997	p.E333*	1.000	pfam_bZIP_Maf,smart_bZIP,pfscan_bZIP	pfam_bZIP_Maf,pfam_Maf_TF_N,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	MAF	HGNC	ENSG00000178573	56	0	0.00	52	31	37.35	-	-	-
MCF2L	0	genome.wustl.edu	37	13	113750783	113750783	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	13	113750783	113750783	C	T	SNP	MCF2L	ENST00000397017	human	ensembl	69_37n	+1	novel	nonsense	c.2230	p.R744*	0.034	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_DH-domain,pfam_Spectrin_repeat,pfam_Pleckstrin_homology,pfam_SH3_2,superfamily_DH-domain,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MCF2L	HGNC	ENSG00000126217	64	0	0.00	47	28	37.33	-	-	-
MLLT4	0	genome.wustl.edu	37	6	168344142	168344143	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	168344142	168344143	CT	-	DEL	MLLT4	ENST00000366806	human	ensembl	69_37n	+1	known	frame_shift_del	c.3205_3206	p.Q1071fs	0.999:1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	49	0	0.00	44	27	36.99	-	-	-
MRPL42	0	genome.wustl.edu	37	12	93894779	93894779	+	RNA	SNP	A	A	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	93894779	93894779	A	T	SNP	MRPL42	ENST00000552938	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.045	-	-	-	no_errors	MRPL42	HGNC	ENSG00000198015	16	0	0.00	26	6	18.75	-	-	-
MUC4	0	genome.wustl.edu	37	3	195507242	195507242	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	3	195507242	195507242	C	A	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.11209	p.A3737S	0.018	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	76	0	0.00	78	9	10.34	-	-	-
NEFM	0	genome.wustl.edu	37	8	24772014	24772014	+	Silent	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	8	24772014	24772014	C	T	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	+1	known	silent	c.708	p.S236	1.000	pfam_F	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	47	0	0.00	41	16	28.07	-	-	-
NEU4	0	genome.wustl.edu	37	2	242758079	242758079	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	242758079	242758079	G	A	SNP	NEU4	ENST00000325935	human	ensembl	69_37n	+1	known	missense	c.1199	p.R400K	0.873	superfamily_Neuraminidase	superfamily_Neuraminidase	-	no_errors	NEU4	HGNC	ENSG00000204099	64	0	0.00	59	24	28.92	-	-	-
OR4D2	0	genome.wustl.edu	37	17	56247845	56247845	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	56247845	56247845	G	T	SNP	OR4D2	ENST00000545221	human	ensembl	69_37n	+1	known	missense	c.829	p.V277F	0.689	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR4D2	HGNC	ENSG00000255713	90	0	0.00	101	28	21.71	-	-	-
ORM1	0	genome.wustl.edu	37	9	117085526	117085526	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	117085526	117085526	G	A	SNP	ORM1	ENST00000259396	human	ensembl	69_37n	+1	known	missense	c.113	p.R38Q	0.001	superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	pfam_Lipocln_cytosolic_FA-bd_dom,superfamily_Calycin-like,pirsf_A1A_glycop,prints_A1A_glycop	-	no_errors	ORM1	HGNC	ENSG00000229314	54	0	0.00	72	8	10.00	-	-	-
PBLD	0	genome.wustl.edu	37	10	70055968	70055968	+	RNA	DEL	A	A	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	10	70055968	70055968	A	-	DEL	PBLD	ENST00000478192	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PBLD	HGNC	ENSG00000108187	14	0	0.00	12	3	20.00	-	-	-
PDE10A	0	genome.wustl.edu	37	6	165848788	165848788	+	Silent	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	165848788	165848788	G	T	SNP	PDE10A	ENST00000539869	human	ensembl	69_37n	-1	known	silent	c.474	p.G158	1.000	pfam_GAF,smart_GAF	pfam_PDEase_catalytic_dom,pfam_GAF,smart_GAF,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE10A	HGNC	ENSG00000112541	50	0	0.00	34	4	10.53	-	-	-
PDE1C	0	genome.wustl.edu	37	7	32209536	32209536	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	7	32209536	32209536	G	C	SNP	PDE1C	ENST00000396193	human	ensembl	69_37n	-1	novel	missense	c.169	p.L57V	1.000	NULL	pfam_PDEase_catalytic_dom,pfam_PDEase_N,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE1C	HGNC	ENSG00000154678	73	0	0.00	70	27	27.84	-	-	-
PDE3A	0	genome.wustl.edu	37	12	20766424	20766424	+	Silent	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	20766424	20766424	C	T	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	+1	known	silent	c.1059	p.A353	0.034	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	52	0	0.00	58	18	23.68	-	-	-
PREPL	0	genome.wustl.edu	37	2	44553850	44553850	+	Splice_Site	DEL	C	C	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	2	44553850	44553850	C	-	DEL	PREPL	ENST00000260648	human	ensembl	69_37n	-1	known	splice_site_del	c.1746+1	e10+1	1.000	-	-	-	no_errors	PREPL	HGNC	ENSG00000138078	42	0	0.00	50	29	35.80	-	-	-
PRG4	0	genome.wustl.edu	37	1	186277898	186277898	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	186277898	186277898	C	T	SNP	PRG4	ENST00000445192	human	ensembl	69_37n	+1	known	missense	c.3047	p.A1016V	0.004	NULL	pfam_Somatomedin_B_dom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Somatomedin_B_dom,smart_Hemopexin/matrixin_repeat,prints_Somatomedin_B_chordata,pfscan_Somatomedin_B_dom	-	no_errors	PRG4	HGNC	ENSG00000116690	26	0	0.00	21	10	32.26	-	-	-
PTCH1	0	genome.wustl.edu	37	9	98218572	98218572	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	9	98218572	98218572	C	T	SNP	PTCH1	ENST00000331920	human	ensembl	69_37n	-1	known	missense	c.3292	p.V1098I	1.000	pfam_Patched,tigrfam_TM_rcpt_patched	pfam_Patched,pfscan_SSD,tigrfam_TM_rcpt_patched	-	no_errors	PTCH1	HGNC	ENSG00000185920	40	0	0.00	50	10	16.67	-	-	-
SCYL1	0	genome.wustl.edu	37	11	65294577	65294577	+	Nonsense_Mutation	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	11	65294577	65294577	G	T	SNP	SCYL1	ENST00000270176	human	ensembl	69_37n	+1	known	nonsense	c.838	p.E280*	1.000	superfamily_ARM-type_fold,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_ARM-type_fold,superfamily_Kinase-like_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	SCYL1	HGNC	ENSG00000142186	34	0	0.00	35	4	10.26	-	-	-
SLC35E1	0	genome.wustl.edu	37	19	16678946	16678946	+	Missense_Mutation	SNP	A	A	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	16678946	16678946	A	C	SNP	SLC35E1	ENST00000409648	human	ensembl	69_37n	-1	known	missense	c.527	p.V176G	1.000	pfam_DMT,pfam_UAA	pfam_DUF250,pfam_DMT,pfam_UAA	-	no_errors	SLC35E1	HGNC	ENSG00000127526	34	0	0.00	37	23	38.33	-	-	-
SLC38A5	0	genome.wustl.edu	37	X	48317085	48317085	+	RNA	SNP	T	T	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	X	48317085	48317085	T	C	SNP	SLC38A5	ENST00000462359	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SLC38A5	HGNC	ENSG00000017483	40	0	0.00	48	6	11.11	-	-	-
SLCO2B1	0	genome.wustl.edu	37	11	74880301	74880301	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	11	74880301	74880301	T	A	SNP	SLCO2B1	ENST00000289575	human	ensembl	69_37n	+1	known	missense	c.532	p.S178T	0.015	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,tigrfam_OA_transporter	-	no_errors	SLCO2B1	HGNC	ENSG00000137491	56	0	0.00	59	20	25.32	-	-	-
SMARCA4	0	genome.wustl.edu	37	19	11152150	11152150	+	Silent	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	11152150	11152150	G	A	SNP	SMARCA4	ENST00000358026	human	ensembl	69_37n	+1	known	silent	c.4434	p.P1478	0.037	superfamily_Bromodomain	pfam_SNF2_N,pfam_Bromodomain,pfam_BRK_domain,pfam_HSA,pfam_Helicase_C,pfam_Gln-Leu-Gln_QLQ,superfamily_Bromodomain,smart_Gln-Leu-Gln_QLQ,smart_HAS_subgr,smart_BRK_domain,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Bromodomain,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	SMARCA4	HGNC	ENSG00000127616	105	0	0.00	111	28	20.14	-	-	-
SOBP	0	genome.wustl.edu	37	6	107854723	107854723	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	6	107854723	107854723	G	A	SNP	SOBP	ENST00000317357	human	ensembl	69_37n	+1	known	missense	c.482	p.R161H	1.000	NULL	NULL	-	no_errors	SOBP	HGNC	ENSG00000112320	62	0	0.00	40	15	27.27	-	-	-
SRP72	0	genome.wustl.edu	37	4	57355634	57355634	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	4	57355634	57355634	G	T	SNP	SRP72	ENST00000342756	human	ensembl	69_37n	+1	known	missense	c.1305	p.W435C	1.000	smart_TPR_repeat	pfam_Signal_recog_part_SRP72_RNA-bd,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	SRP72	HGNC	ENSG00000174780	39	0	0.00	18	6	25.00	-	-	-
STAG2	0	genome.wustl.edu	37	X	123200024	123200024	+	Splice_Site	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	X	123200024	123200024	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	+1	known	splice_site	c.2097-1	e20-1	1.000	-	-	-	no_errors	STAG2	HGNC	ENSG00000101972	25	0	0	28	10	26.32	-	-	-
STAG2	0	genome.wustl.edu	37	X	123200024	123200024	+	Splice_Site	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	X	123200024	123200024	G	A	SNP	STAG2	ENST00000218089	human	ensembl	69_37n	+1	known	splice_site	c.2097-1	e20-1	1.000	-	-	-	no_errors	STAG2	HGNC	ENSG00000101972	25	0	0.00	28	10	26.32	-	-	-
SUCO	0	genome.wustl.edu	37	1	172558484	172558485	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	172558484	172558485	AA	-	DEL	SUCO	ENST00000367723	human	ensembl	69_37n	+1	known	frame_shift_del	c.2699_2700	p.E900fs	0.917:0.756	NULL	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUCO	HGNC	ENSG00000094975	41	0	0.00	37	9	19.57	-	-	-
TP53	0	genome.wustl.edu	37	17	7578526	7578526	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	17	7578526	7578526	C	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.404	p.C135F	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	54	0	0.00	18	20	52.63	-	-	-
VAV3	0	genome.wustl.edu	37	1	108226109	108226109	+	Splice_Site	SNP	C	C	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	108226109	108226109	C	A	SNP	VAV3	ENST00000370056	human	ensembl	69_37n	-1	known	splice_site	c.1777+1	e19+1	1.000	-	-	-	no_errors	VAV3	HGNC	ENSG00000134215	43	0	0.00	47	21	30.88	-	-	-
VWF	0	genome.wustl.edu	37	12	6128145	6128145	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	12	6128145	6128145	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.4439	p.P1480L	0.432	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	64	0	0.00	50	37	42.05	-	-	-
WBP11P1	0	genome.wustl.edu	37	18	30091635	30091635	+	RNA	SNP	T	T	C			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	18	30091635	30091635	T	C	SNP	WBP11P1	ENST00000567636	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	WBP11P1	HGNC	ENSG00000260389	11	0	0.00	6	4	40.00	-	-	-
ZNF555	0	genome.wustl.edu	37	19	2853678	2853678	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	19	2853678	2853678	A	G	SNP	ZNF555	ENST00000334241	human	ensembl	69_37n	+1	known	missense	c.1615	p.K539E	0.004	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF555	HGNC	ENSG00000186300	42	0	0.00	41	19	31.67	-	-	-
ZNF648	0	genome.wustl.edu	37	1	182026518	182026518	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XV-01A-21D-A23C-09	TCGA-A2-A3XV-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3656ab22-aa31-4140-b50b-251546635874	9187b604-bc3a-4ed4-9bb2-912e9633ff05	1	182026518	182026518	C	T	SNP	ZNF648	ENST00000339948	human	ensembl	69_37n	-1	known	missense	c.628	p.A210T	0.222	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF648	HGNC	ENSG00000179930	85	0	0.00	52	39	42.86	-	-	-
