Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C11orf84	0	genome.wustl.edu	37	11	63585595	63585595	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	11	63585595	63585595	C	T	SNP	C11orf84	ENST00000294244	human	ensembl	69_37n	+1	known	missense	c.446	p.P149L	0.001	NULL	NULL	-	no_errors	C11orf84	HGNC	ENSG00000168005	40	0	0.00	37	9	19.57	-	-	-
C17orf66	0	genome.wustl.edu	37	17	34182281	34182281	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	34182281	34182281	G	A	SNP	C17orf66	ENST00000311880	human	ensembl	69_37n	-1	known	missense	c.1499	p.P500L	0.045	NULL	superfamily_ARM-type_fold	-	no_errors	C17orf66	HGNC	ENSG00000172653	94	0	0.00	58	11	15.94	-	-	-
CEP85	0	genome.wustl.edu	37	1	26581958	26581958	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	1	26581958	26581958	G	C	SNP	CEP85	ENST00000252992	human	ensembl	69_37n	+1	known	missense	c.505	p.G169R	1.000	NULL	NULL	-	no_errors	CEP85	HGNC	ENSG00000130695	56	0	0.00	52	14	21.21	-	-	-
CLCN4	0	genome.wustl.edu	37	X	10180564	10180564	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	X	10180564	10180564	G	T	SNP	CLCN4	ENST00000380833	human	ensembl	69_37n	+1	known	missense	c.1447	p.V483L	1.000	pfam_Cl-channel_volt-gated,superfamily_Cl-channel_core,prints_Cl-channel_volt-gated	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-4	-	no_errors	CLCN4	HGNC	ENSG00000073464	31	0	0.00	30	5	14.29	-	-	-
COMMD9	0	genome.wustl.edu	37	11	36297762	36297762	+	Silent	SNP	G	G	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	11	36297762	36297762	G	A	SNP	COMMD9	ENST00000263401	human	ensembl	69_37n	-1	known	silent	c.381	p.D127	1.000	pfam_HCaRG	pfam_HCaRG	-	no_errors	COMMD9	HGNC	ENSG00000110442	36	0	0.00	34	8	19.05	-	-	-
EME1	0	genome.wustl.edu	37	17	48453257	48453257	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	48453257	48453257	G	C	SNP	EME1	ENST00000393271	human	ensembl	69_37n	+1	known	missense	c.688	p.E230Q	0.001	NULL	pfam_ERCC4_domain,smart_ERCC4_domain	-	no_errors	EME1	HGNC	ENSG00000154920	37	0	0.00	24	6	19.35	-	-	-
FTHL17	0	genome.wustl.edu	37	X	31089761	31089761	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	X	31089761	31089761	C	A	SNP	FTHL17	ENST00000359202	human	ensembl	69_37n	-1	known	missense	c.310	p.A104S	0.968	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTHL17	HGNC	ENSG00000132446	25	0	0.00	29	22	43.14	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	11984671	11984672	+	Splice_Site	DEL	AG	AG	-			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	11984671	11984672	AG	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	splice_site_del	c.252-2_252-1	e4-1	1.000:1.000	-	-	-	no_errors	MAP2K4	HGNC	ENSG00000065559	32	0	0.00	15	12	44.44	-	-	-
MRPL38	0	genome.wustl.edu	37	17	73897305	73897305	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	73897305	73897305	C	T	SNP	MRPL38	ENST00000309352	human	ensembl	69_37n	-1	known	nonsense	c.641	p.W214*	1.000	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	pfam_PtdEtn-bd_prot_PEBP,superfamily_PtdEtn-bd_prot_PEBP	-	no_errors	MRPL38	HGNC	ENSG00000204316	27	0	0.00	28	7	20.00	-	-	-
NCOR1	0	genome.wustl.edu	37	17	16012112	16012112	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	17	16012112	16012112	C	A	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	nonsense	c.2170	p.E724*	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	116	0	0.00	31	38	55.07	-	-	-
OR6C65	0	genome.wustl.edu	37	12	55794527	55794527	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	12	55794527	55794527	C	T	SNP	OR6C65	ENST00000379665	human	ensembl	69_37n	+1	known	missense	c.215	p.T72M	0.013	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C65	HGNC	ENSG00000205328	67	0	0.00	49	11	18.33	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	60	0	0.00	30	19	38.78	-	-	-
RNF183	0	genome.wustl.edu	37	9	116060076	116060076	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	9	116060076	116060076	G	A	SNP	RNF183	ENST00000297894	human	ensembl	69_37n	-1	known	missense	c.389	p.P130L	0.002	NULL	smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF183	HGNC	ENSG00000165188	24	0	0.00	28	6	17.65	-	-	-
SFMBT2	0	genome.wustl.edu	37	10	7409820	7409820	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	10	7409820	7409820	G	C	SNP	SFMBT2	ENST00000361972	human	ensembl	69_37n	-1	known	missense	c.227	p.P76R	1.000	smart_Mbt,pfscan_Mbt	pfam_Mbt,pfam_DUF3588,pfam_SAM_type1,pfam_Pointed_dom,superfamily_SAM/pointed,superfamily_ARM-type_fold,smart_Mbt,smart_SAM,pfscan_Mbt	-	no_errors	SFMBT2	HGNC	ENSG00000198879	42	0	0.00	48	11	18.64	-	-	-
SLC25A47	0	genome.wustl.edu	37	14	100793566	100793566	+	Silent	SNP	G	G	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	14	100793566	100793566	G	A	SNP	SLC25A47	ENST00000361529	human	ensembl	69_37n	+1	known	silent	c.186	p.T62	0.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,pfscan_Mitochondrial_sb/sol_carrier,prints_Mit_carrier	-	no_errors	SLC25A47	HGNC	ENSG00000140107	43	0	0.00	39	28	41.79	-	-	-
SMAD5	0	genome.wustl.edu	37	5	135489806	135489807	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	5	135489806	135489807	AG	-	DEL	SMAD5	ENST00000545279	human	ensembl	69_37n	+1	known	frame_shift_del	c.357_358	p.E120fs	1.000:1.000	pfam_MAD_homology1_Dwarfin-type,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,pfscan_MAD_homology_MH1	pfam_SMAD_dom_Dwarfin-type,pfam_MAD_homology1_Dwarfin-type,pfam_Interferon_reg_factor-3,superfamily_SMAD_FHA_domain,superfamily_MAD_homology_MH1,smart_MAD_homology1_Dwarfin-type,smart_SMAD_dom_Dwarfin-type,pfscan_MAD_homology_MH1,pfscan_SMAD_dom_Dwarfin-type	-	no_errors	SMAD5	HGNC	ENSG00000113658	69	0	0.00	72	10	12.20	-	-	-
SULT1A4	0	genome.wustl.edu	37	16	29472811	29472811	+	Silent	SNP	A	A	G			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	16	29472811	29472811	A	G	SNP	SULT1A4	ENST00000565290	human	ensembl	69_37n	+1	known	silent	c.105	p.Q35	0.951	NULL	pfam_Sulfotransferase_dom	-	no_errors	SULT1A4	HGNC	ENSG00000213648	10	0	0.00	1	3	75.00	-	-	-
ZNF560	0	genome.wustl.edu	37	19	9577375	9577375	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A23E-01A-11D-A159-09	TCGA-AC-A23E-10A-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	137cb73f-394a-459a-83e6-0b3c85c955cd	a0fb9995-ee0b-4181-87e9-414ead80647d	19	9577375	9577375	G	A	SNP	ZNF560	ENST00000301480	human	ensembl	69_37n	-1	known	missense	c.2248	p.R750C	0.002	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF560	HGNC	ENSG00000198028	70	0	0.00	62	13	17.33	-	-	-
