Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACSS3	0	genome.wustl.edu	37	12	81568688	81568688	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	81568688	81568688	C	T	SNP	ACSS3	ENST00000548058	human	ensembl	69_37n	+1	known	missense	c.1220	p.A407V	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig,pfam_Acyl-CoA_synth_DUF3448	-	no_errors	ACSS3	HGNC	ENSG00000111058	35	0	0.00	45	9	16.67	-	-	-
ALG5	0	genome.wustl.edu	37	13	37569615	37569615	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	37569615	37569615	G	A	SNP	ALG5	ENST00000239891	human	ensembl	69_37n	-1	known	missense	c.185	p.S62L	0.960	NULL	pfam_Glyco_trans_2	-	no_errors	ALG5	HGNC	ENSG00000120697	73	0	0.00	43	17	28.33	-	-	-
AMPH	0	genome.wustl.edu	37	7	38424484	38424484	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	38424484	38424484	G	A	SNP	AMPH	ENST00000356264	human	ensembl	69_37n	-1	known	nonsense	c.2023	p.Q675*	1.000	pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain,prints_Amphiphysin_1	pfam_BAR_dom,pfam_SH3_2,superfamily_SH3_domain,smart_BAR_dom,smart_SH3_domain,pfscan_BAR_dom,pfscan_SH3_domain,prints_Amphiphysin,prints_Amphiphysin_1,prints_SH3_domain	-	no_errors	AMPH	HGNC	ENSG00000078053	39	0	0.00	34	8	19.05	-	-	-
BPNT1	0	genome.wustl.edu	37	1	220233117	220233117	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	220233117	220233117	T	C	SNP	BPNT1	ENST00000322067	human	ensembl	69_37n	-1	known	missense	c.689	p.E230G	1.000	pfam_Inositol_monophosphatase	pfam_Inositol_monophosphatase	-	no_errors	BPNT1	HGNC	ENSG00000162813	39	0	0.00	44	10	18.52	-	-	-
C1orf101	0	genome.wustl.edu	37	1	244724054	244724054	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	244724054	244724054	G	A	SNP	C1orf101	ENST00000366534	human	ensembl	69_37n	+1	known	missense	c.1114	p.V372I	0.000	NULL	NULL	-	no_errors	C1orf101	HGNC	ENSG00000179397	60	0	0.00	107	20	15.62	-	-	-
C3orf55	0	genome.wustl.edu	37	3	157261177	157261177	+	RNA	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	157261177	157261177	C	T	SNP	C3orf55	ENST00000498159	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	C3orf55	HGNC	ENSG00000174899	25	0	0.00	30	10	25.00	-	-	-
CAMK4	0	genome.wustl.edu	37	5	110820109	110820109	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	5	110820109	110820109	G	T	SNP	CAMK4	ENST00000282356	human	ensembl	69_37n	+1	known	missense	c.1367	p.S456I	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CAMK4	HGNC	ENSG00000152495	38	0	0.00	30	4	11.76	-	-	-
CARD14	0	genome.wustl.edu	37	17	78178979	78178979	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	78178979	78178979	C	T	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	+1	known	silent	c.2544	p.L848	0.528	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	51	0	0.00	53	25	32.05	-	-	-
CATSPERG	0	genome.wustl.edu	37	19	38858703	38858703	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	38858703	38858703	C	G	SNP	CATSPERG	ENST00000409235	human	ensembl	69_37n	+1	known	missense	c.2946	p.I982M	1.000	NULL	NULL	-	no_errors	CATSPERG	HGNC	ENSG00000099338	26	0	0.00	21	8	27.59	-	-	-
CD300LG	0	genome.wustl.edu	37	17	41939191	41939191	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	41939191	41939191	C	G	SNP	CD300LG	ENST00000317310	human	ensembl	69_37n	+1	known	missense	c.911	p.S304C	0.004	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	CD300LG	HGNC	ENSG00000161649	29	0	0.00	25	11	29.73	-	-	-
CD53	0	genome.wustl.edu	37	1	111441958	111441958	+	RNA	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	111441958	111441958	G	A	SNP	CD53	ENST00000476408	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	CD53	HGNC	ENSG00000143119	18	0	0.00	17	4	19.05	-	-	-
CDH13	0	genome.wustl.edu	37	16	83214480	83214480	+	Silent	SNP	C	C	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	83214480	83214480	C	A	SNP	CDH13	ENST00000431540	human	ensembl	69_37n	+1	putative	silent	c.489	p.T163	0.685	NULL	pfam_Cadherin_pro_dom,superfamily_Cadherin-like	-	no_errors	CDH13	HGNC	ENSG00000140945	32	0	0.00	14	6	30.00	-	-	-
CDK5RAP1	0	genome.wustl.edu	37	20	31946930	31946930	+	Splice_Site	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	31946930	31946930	C	T	SNP	CDK5RAP1	ENST00000357886	human	ensembl	69_37n	-1	known	splice_site	c.1726-1	e14-1	1.000	-	-	-	no_errors	CDK5RAP1	HGNC	ENSG00000101391	26	0	0.00	15	5	25.00	-	-	-
CDS2	0	genome.wustl.edu	37	20	5155847	5155847	+	Silent	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	5155847	5155847	G	T	SNP	CDS2	ENST00000460006	human	ensembl	69_37n	+1	known	silent	c.213	p.V71	0.998	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS2	HGNC	ENSG00000101290	59	0	0.00	58	10	14.71	-	-	-
CHTF18	0	genome.wustl.edu	37	16	842805	842805	+	Silent	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	842805	842805	C	G	SNP	CHTF18	ENST00000317063	human	ensembl	69_37n	+1	known	silent	c.2151	p.L717	0.080	smart_AAA+_ATPase	pfam_ATPase_AAA_core,pfam_ATPase_dyneun-rel_AAA,pfam_DNA_helicase_Holl-junc_RuvB_N,smart_AAA+_ATPase	-	no_errors	CHTF18	HGNC	ENSG00000127586	41	0	0.00	47	8	14.55	-	-	-
CNOT3	0	genome.wustl.edu	37	19	54656056	54656056	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	54656056	54656056	G	A	SNP	CNOT3	ENST00000221232	human	ensembl	69_37n	+1	known	missense	c.1699	p.E567K	0.996	pirsf_CCR4-NOT_su3/5	pfam_Not_N,pfam_NOT,pirsf_CCR4-NOT_su3/5	-	no_errors	CNOT3	HGNC	ENSG00000088038	69	0	0.00	48	12	20.00	-	-	-
CPED1	0	genome.wustl.edu	37	7	120691313	120691313	+	RNA	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	120691313	120691313	C	T	SNP	CPED1	ENST00000495036	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CPED1	HGNC	ENSG00000106034	30	0	0.00	33	5	13.16	-	-	-
CTSW	0	genome.wustl.edu	37	11	65650290	65650290	+	Silent	SNP	A	A	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	65650290	65650290	A	G	SNP	CTSW	ENST00000307886	human	ensembl	69_37n	+1	known	silent	c.660	p.K220	0.000	pfam_Peptidase_C1A_C,smart_Peptidase_C1A_C	pfam_Peptidase_C1A_C,pfam_Prot_inhib_I29,smart_Prot_inhib_I29,smart_Peptidase_C1A_C,prints_Peptidase_C1A_C	-	no_errors	CTSW	HGNC	ENSG00000172543	28	0	0.00	36	5	12.20	-	-	-
CWC25	0	genome.wustl.edu	37	17	36971290	36971290	+	Silent	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	36971290	36971290	G	A	SNP	CWC25	ENST00000225428	human	ensembl	69_37n	-1	known	silent	c.252	p.D84	0.974	pfam_CWC25	pfam_CWC25,pfam_CIR_N_dom	-	no_errors	CWC25	HGNC	ENSG00000108296	32	0	0.00	35	7	16.67	-	-	-
DDX58	0	genome.wustl.edu	37	9	32466374	32466374	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	32466374	32466374	C	T	SNP	DDX58	ENST00000379883	human	ensembl	69_37n	-1	known	missense	c.2251	p.E751K	1.000	pfscan_Helicase_C	pfam_RIG-I_C-RD,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,superfamily_DEATH-like,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX58	HGNC	ENSG00000107201	139	0	0.00	101	16	13.68	-	-	-
DNAJC30	0	genome.wustl.edu	37	7	73097257	73097257	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	73097257	73097257	G	T	SNP	DNAJC30	ENST00000395176	human	ensembl	69_37n	-1	known	missense	c.497	p.A166D	1.000	NULL	pfam_DnaJ_N,superfamily_DnaJ_N,smart_DnaJ_N,prints_Hsp_DnaJ,pfscan_DnaJ_N	-	no_errors	DNAJC30	HGNC	ENSG00000176410	22	0	0.00	18	8	30.77	-	-	-
DNM2	0	genome.wustl.edu	37	19	10908144	10908144	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	10908144	10908144	G	C	SNP	DNM2	ENST00000314646	human	ensembl	69_37n	+1	known	missense	c.1285	p.D429H	1.000	pfam_Dynamin_central	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM2	HGNC	ENSG00000079805	59	0	0.00	46	8	14.55	-	-	-
DOCK4	0	genome.wustl.edu	37	7	111379194	111379194	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	111379194	111379194	G	A	SNP	DOCK4	ENST00000428084	human	ensembl	69_37n	-1	known	missense	c.5228	p.S1743L	0.994	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_Rho_GTPase_activation_prot,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK4	HGNC	ENSG00000128512	73	0	0.00	35	13	27.08	-	-	-
DOCK7	0	genome.wustl.edu	37	1	63090858	63090858	+	RNA	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	63090858	63090858	C	T	SNP	DOCK7	ENST00000464312	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	DOCK7	HGNC	ENSG00000116641	29	0	0.00	29	4	12.12	-	-	-
DYTN	0	genome.wustl.edu	37	2	207575268	207575268	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	207575268	207575268	G	A	SNP	DYTN	ENST00000452335	human	ensembl	69_37n	-1	known	missense	c.74	p.S25L	0.979	pfam_EF-hand_dom_typ1	pfam_EF-hand_dom_typ2,pfam_EF-hand_dom_typ1,pfam_Znf_ZZ,smart_Znf_ZZ,pfscan_Znf_ZZ	-	no_errors	DYTN	HGNC	ENSG00000232125	72	0	0.00	60	23	27.71	-	-	-
EBF2	0	genome.wustl.edu	37	8	25899697	25899697	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	8	25899697	25899697	G	A	SNP	EBF2	ENST00000520164	human	ensembl	69_37n	-1	known	missense	c.202	p.H68Y	1.000	NULL	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set,smart_IPT_TIG_rcpt	-	no_errors	EBF2	HGNC	ENSG00000221818	72	0	0.00	47	10	17.54	-	-	-
EIF2B5	0	genome.wustl.edu	37	3	183862720	183862720	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	183862720	183862720	G	A	SNP	EIF2B5	ENST00000273783	human	ensembl	69_37n	+1	known	missense	c.2155	p.E719K	0.999	pfam_W2_domain	pfam_W2_domain,superfamily_ARM-type_fold,superfamily_Trimer_LpxA-like,smart_W2_domain	-	no_errors	EIF2B5	HGNC	ENSG00000145191	33	0	0.00	19	8	29.63	-	-	-
EPS8L2	0	genome.wustl.edu	37	11	726444	726444	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	726444	726444	G	A	SNP	EPS8L2	ENST00000318562	human	ensembl	69_37n	+1	known	missense	c.1894	p.E632K	0.827	superfamily_SAM/pointed	pfam_PTB,pfam_SH3_domain,pfam_PTyr_interaction_dom,pfam_SH3_2,superfamily_SH3_domain,superfamily_SAM/pointed,smart_PTyr_interaction_dom,smart_SH3_domain,pfscan_PTyr_interaction_dom,pfscan_SH3_domain	-	no_errors	EPS8L2	HGNC	ENSG00000177106	11	0	0.00	0	4	100.00	-	-	-
FAM127A	0	genome.wustl.edu	37	X	134167176	134167176	+	RNA	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	134167176	134167176	G	A	SNP	FAM127A	ENST00000464369	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FAM127A	HGNC	ENSG00000134590	58	0	0.00	50	15	23.08	-	-	-
FAM184A	0	genome.wustl.edu	37	6	119345694	119345694	+	Silent	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	119345694	119345694	G	A	SNP	FAM184A	ENST00000338891	human	ensembl	69_37n	-1	known	silent	c.444	p.V148	0.612	NULL	superfamily_Prefoldin	-	no_errors	FAM184A	HGNC	ENSG00000111879	42	0	0.00	37	9	19.57	-	-	-
FBXW7	0	genome.wustl.edu	37	4	153332918	153332918	+	Missense_Mutation	SNP	C	C	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	4	153332918	153332918	C	A	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.38	p.R13L	1.000	NULL	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	94	0	0.00	78	24	23.53	-	-	-
FCRL5	0	genome.wustl.edu	37	1	157504500	157504500	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	157504500	157504500	A	T	SNP	FCRL5	ENST00000356953	human	ensembl	69_37n	-1	known	missense	c.1585	p.F529I	0.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	FCRL5	HGNC	ENSG00000143297	50	0	0.00	55	12	17.91	-	-	-
FDPS	0	genome.wustl.edu	37	1	155279482	155279482	+	RNA	SNP	T	T	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	155279482	155279482	T	G	SNP	FDPS	ENST00000487002	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	FDPS	HGNC	ENSG00000160752	10	0	0.00	15	5	23.81	-	-	-
GGT1	0	genome.wustl.edu	37	22	25007131	25007131	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	22	25007131	25007131	C	T	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	+1	known	missense	c.83	p.S28L	0.062	NULL	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	126	0	0.00	98	33	25.00	-	-	-
GGT1	0	genome.wustl.edu	37	22	25019803	25019803	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	22	25019803	25019803	C	T	SNP	GGT1	ENST00000248923	human	ensembl	69_37n	+1	known	missense	c.940	p.H314Y	1.000	pfam_GGT_peptidase,tigrfam_GGT_peptidase	pfam_GGT_peptidase,prints_GGT_peptidase,tigrfam_GGT_peptidase	-	no_errors	GGT1	HGNC	ENSG00000100031	95	0	0.00	114	17	12.98	-	-	-
GLRX3	0	genome.wustl.edu	37	10	131967700	131967700	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	131967700	131967700	C	T	SNP	GLRX3	ENST00000331244	human	ensembl	69_37n	+1	known	silent	c.717	p.L239	1.000	superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	pfam_Glutaredoxin,pfam_Thioredoxin_domain,pfam_mRNA_splic_U5,pfam_Phosducin_thioredoxin-like_dom,superfamily_Thioredoxin-like_fold,tigrfam_Monothiol_GRX-rel	-	no_errors	GLRX3	HGNC	ENSG00000108010	59	0	0.00	46	11	19.30	-	-	-
GSN	0	genome.wustl.edu	37	9	124091358	124091358	+	RNA	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	124091358	124091358	G	A	SNP	GSN	ENST00000477553	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	GSN	HGNC	ENSG00000148180	33	0	0.00	22	5	18.52	-	-	-
HMGB1	0	genome.wustl.edu	37	13	31039984	31039984	+	RNA	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	31039984	31039984	G	A	SNP	HMGB1	ENST00000468384	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	HMGB1	HGNC	ENSG00000189403	29	0	0.00	24	9	26.47	-	-	-
HTATSF1	0	genome.wustl.edu	37	X	135581801	135581801	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	135581801	135581801	C	T	SNP	HTATSF1	ENST00000218364	human	ensembl	69_37n	+1	known	silent	c.231	p.F77	0.840	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	HTATSF1	HGNC	ENSG00000102241	79	0	0.00	61	10	14.08	-	-	-
INPP5F	0	genome.wustl.edu	37	10	121565916	121565916	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	121565916	121565916	G	A	SNP	INPP5F	ENST00000361976	human	ensembl	69_37n	+1	known	missense	c.1364	p.R455H	1.000	pfscan_Syja_N	pfam_Syja_N,pfam_Inositol_phosphatase,pfscan_Syja_N	-	no_errors	INPP5F	HGNC	ENSG00000198825	49	0	0.00	36	16	30.19	-	-	-
ITGA4	0	genome.wustl.edu	37	2	182399016	182399016	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	182399016	182399016	C	T	SNP	ITGA4	ENST00000397033	human	ensembl	69_37n	+1	known	silent	c.2802	p.L934	1.000	NULL	pfam_Integrin_alpha-2,pfam_FG-GAP,smart_Int_alpha_beta-p,prints_Integrin_alpha	-	no_errors	ITGA4	HGNC	ENSG00000115232	54	0	0.00	34	11	24.44	-	-	-
JAM2	0	genome.wustl.edu	37	21	27012166	27012166	+	Silent	SNP	G	G	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	21	27012166	27012166	G	C	SNP	JAM2	ENST00000400535	human	ensembl	69_37n	+1	known	silent	c.33	p.L11	0.207	NULL	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	JAM2	HGNC	ENSG00000154721	64	0	0.00	49	14	22.22	-	-	-
KIAA0913	0	genome.wustl.edu	37	10	75558790	75558790	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	75558790	75558790	G	T	SNP	KIAA0913	ENST00000398706	human	ensembl	69_37n	+1	known	missense	c.4207	p.A1403S	1.000	NULL	pfscan_Znf_SWIM	-	no_errors	KIAA0913	HGNC	ENSG00000214655	27	0	0.00	25	4	13.79	-	-	-
KIDINS220	0	genome.wustl.edu	37	2	8943190	8943190	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	8943190	8943190	T	C	SNP	KIDINS220	ENST00000256707	human	ensembl	69_37n	-1	known	missense	c.671	p.K224R	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_KAP_NTPase,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	KIDINS220	HGNC	ENSG00000134313	73	0	0.00	51	8	13.56	-	-	-
KRT17	0	genome.wustl.edu	37	17	39780674	39780674	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	39780674	39780674	G	A	SNP	KRT17	ENST00000311208	human	ensembl	69_37n	-1	known	missense	c.88	p.R30W	0.436	NULL	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT17	HGNC	ENSG00000128422	88	0	0.00	60	23	27.71	-	-	-
LAMA1	0	genome.wustl.edu	37	18	6943275	6943275	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	18	6943275	6943275	G	C	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.8971	p.L2991V	0.694	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	124	0	0.00	104	23	18.11	-	-	-
LMO7	0	genome.wustl.edu	37	13	76335112	76335112	+	Missense_Mutation	SNP	G	G	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	76335112	76335112	G	C	SNP	LMO7	ENST00000357063	human	ensembl	69_37n	+1	known	missense	c.411	p.L137F	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_SM22_calponin	pfam_CH-domain,pfam_PDZ,superfamily_CH-domain,superfamily_PDZ,smart_CH-domain,smart_PDZ,pfscan_CH-domain,pfscan_PDZ,prints_SM22_calponin	-	no_errors	LMO7	HGNC	ENSG00000136153	38	0	0.00	34	7	17.07	-	-	-
LTBP2	0	genome.wustl.edu	37	14	74969268	74969268	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	74969268	74969268	C	T	SNP	LTBP2	ENST00000553939	human	ensembl	69_37n	-1	known	missense	c.5258	p.R1753K	0.001	NULL	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,superfamily_Growth_fac_rcpt,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP2	HGNC	ENSG00000119681	9	0	0.00	6	14	70.00	-	-	-
MAP2K3	0	genome.wustl.edu	37	17	21215457	21215457	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	21215457	21215457	G	A	SNP	MAP2K3	ENST00000342679	human	ensembl	69_37n	+1	known	missense	c.778	p.E260K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K3	HGNC	ENSG00000034152	122	0	0.00	98	12	10.91	-	-	-
MEGF8	0	genome.wustl.edu	37	19	42857928	42857928	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	42857928	42857928	G	A	SNP	MEGF8	ENST00000251268	human	ensembl	69_37n	+1	known	missense	c.3763	p.A1255T	1.000	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_CUB,pfam_EGF_laminin,pfam_Plexin_repeat,superfamily_Gal_Oxase/kelch_b-propeller,superfamily_CUB,superfamily_Plexin-like_fold,smart_CUB,smart_EGF-like,smart_Plexin-like,smart_EGF-like_Ca-bd,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin	-	no_errors	MEGF8	HGNC	ENSG00000105429	41	0	0.00	25	10	28.57	-	-	-
MIR3164	0	genome.wustl.edu	37	11	68850688	68850688	+	RNA	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	68850688	68850688	G	T	SNP	MIR3164	ENST00000581178	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.015	-	-	-	no_errors	MIR3164	HGNC	ENSG00000265539	41	0	0.00	31	4	11.43	-	-	-
MLL3	0	genome.wustl.edu	37	7	151846017	151846017	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	7	151846017	151846017	T	-	DEL	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_del	c.13166	p.K4389fs	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	32	0	0.00	26	9	25.71	-	-	-
MUC19	0	genome.wustl.edu	37	12	40821259	40821259	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	40821259	40821259	C	T	SNP	MUC19	ENST00000425730	human	ensembl	69_37n	+1	novel	nonsense	c.1168	p.Q390*	1.000	pfam_TIL_dom,superfamily_TIL_dom	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_VWC_out,smart_Unchr_dom_Cys-rich	-	no_stop_codon:bad_bp_length_for_coding_region	MUC19	HGNC	ENSG00000205592	78	0	0.00	53	12	18.46	-	-	-
MYO1E	0	genome.wustl.edu	37	15	59428908	59428908	+	Silent	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	15	59428908	59428908	G	T	SNP	MYO1E	ENST00000559412	human	ensembl	69_37n	-1	putative	silent	c.198	p.G66	1.000	NULL	NULL	-	no_start_codon	MYO1E	HGNC	ENSG00000157483	41	0	0.00	36	4	10.00	-	-	-
MYO3A	0	genome.wustl.edu	37	10	26377234	26377234	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	26377234	26377234	G	A	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	+1	known	missense	c.1462	p.G488R	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	58	0	0.00	44	8	15.38	-	-	-
NALCN	0	genome.wustl.edu	37	13	102047687	102047687	+	Silent	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	102047687	102047687	G	T	SNP	NALCN	ENST00000251127	human	ensembl	69_37n	-1	known	silent	c.138	p.A46	1.000	NULL	pfam_Ion_trans_dom	-	no_errors	NALCN	HGNC	ENSG00000102452	30	0	0.00	15	8	33.33	-	-	-
NBPF14	0	genome.wustl.edu	37	1	148009510	148009510	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	148009510	148009510	G	A	SNP	NBPF14	ENST00000310701	human	ensembl	69_37n	-1	known	missense	c.1814	p.A605V	0.000	pfam_NBPF_dom	pfam_NBPF_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NBPF14	HGNC	ENSG00000122497	37	0	0.00	29	4	12.12	-	-	-
NECAB1	0	genome.wustl.edu	37	8	91929752	91929752	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	8	91929752	91929752	C	T	SNP	NECAB1	ENST00000417640	human	ensembl	69_37n	+1	known	silent	c.390	p.F130	1.000	NULL	pfam_Antibiotic_mOase,superfamily_Dimeric_a/b-barrel,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	NECAB1	HGNC	ENSG00000123119	67	0	0.00	41	24	36.36	-	-	-
PBOV1	0	genome.wustl.edu	37	6	138539212	138539212	+	Silent	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	138539212	138539212	G	A	SNP	PBOV1	ENST00000527246	human	ensembl	69_37n	-1	known	silent	c.321	p.F107	0.047	NULL	NULL	-	no_errors	PBOV1	HGNC	ENSG00000254440	89	0	0.00	74	17	18.68	-	-	-
PDE3B	0	genome.wustl.edu	37	11	14665751	14665751	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	14665751	14665751	C	G	SNP	PDE3B	ENST00000282096	human	ensembl	69_37n	+1	known	missense	c.130	p.P44A	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3B	HGNC	ENSG00000152270	10	0	0.00	8	6	42.86	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952072	178952072	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	178952072	178952072	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3127	p.M1043V	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	20	0	0.00	18	11	37.93	-	-	-
PLK1S1	0	genome.wustl.edu	37	20	21224941	21224941	+	RNA	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	21224941	21224941	C	T	SNP	PLK1S1	ENST00000451772	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PLK1S1	HGNC	ENSG00000088970	64	0	0.00	51	17	25.00	-	-	-
PRIC285	0	genome.wustl.edu	37	20	62203329	62203329	+	RNA	SNP	A	A	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	62203329	62203329	A	G	SNP	PRIC285	ENST00000479540	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.196	-	-	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	45	0	0.00	41	5	10.64	-	-	-
PRSS54	0	genome.wustl.edu	37	16	58314580	58314580	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	58314580	58314580	C	T	SNP	PRSS54	ENST00000219301	human	ensembl	69_37n	-1	known	missense	c.736	p.E246K	0.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	-	no_errors	PRSS54	HGNC	ENSG00000103023	29	0	0.00	10	9	47.37	-	-	-
RASEF	0	genome.wustl.edu	37	9	85615112	85615114	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	9	85615112	85615114	TTC	-	DEL	RASEF	ENST00000376447	human	ensembl	69_37n	-1	known	in_frame_del	c.1695_1693	p.E565in_frame_del	1.000:1.000:1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,superfamily_Vinculin/catenin,smart_EF_hand_Ca-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,pfscan_EF_HAND_2,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RASEF	HGNC	ENSG00000165105	43	0	0.00	23	3	11.54	-	-	-
RET	0	genome.wustl.edu	37	10	43597899	43597899	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	10	43597899	43597899	C	T	SNP	RET	ENST00000355710	human	ensembl	69_37n	+1	known	silent	c.447	p.F149	0.345	pirsf_Tyr_kinase_Ret_rcpt	pirsf_Tyr_kinase_Ret_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Cadherin,superfamily_Kinase-like_dom,superfamily_Cadherin-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,pfscan_Cadherin	-	no_errors	RET	HGNC	ENSG00000165731	48	0	0.00	43	11	20.37	-	-	-
RNFT1	0	genome.wustl.edu	37	17	58034639	58034639	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	58034639	58034639	G	T	SNP	RNFT1	ENST00000305783	human	ensembl	69_37n	-1	known	missense	c.951	p.N317K	0.939	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNFT1	HGNC	ENSG00000189050	35	0	0.00	29	4	12.12	-	-	-
SALL2	0	genome.wustl.edu	37	14	21993215	21993215	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	21993215	21993215	G	A	SNP	SALL2	ENST00000327430	human	ensembl	69_37n	-1	known	missense	c.647	p.T216M	0.446	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL2	HGNC	ENSG00000165821	25	0	0.00	19	5	20.83	-	-	-
SCAND2	0	genome.wustl.edu	37	15	85177723	85177723	+	RNA	SNP	T	T	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	15	85177723	85177723	T	G	SNP	SCAND2	ENST00000427525	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SCAND2	HGNC	ENSG00000176700	49	0	0.00	35	4	10.00	-	-	-
SETD8	0	genome.wustl.edu	37	12	123874686	123874686	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	123874686	123874686	G	A	SNP	SETD8	ENST00000437502	human	ensembl	69_37n	+1	putative	missense	c.94	p.D32N	0.000	pirsf_Hist_H4-K20_MeTrfase	pfam_SET_dom,pirsf_Hist_H4-K20_MeTrfase,pfscan_SET_dom	-	no_stop_codon	SETD8	HGNC	ENSG00000183955	48	0	0.00	44	12	21.05	-	-	-
SLAIN1	0	genome.wustl.edu	37	13	78337312	78337312	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	78337312	78337312	T	C	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	+1	known	missense	c.1664	p.L555P	1.000	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	106	0	0.00	70	25	26.04	-	-	-
SLAIN1	0	genome.wustl.edu	37	13	78337313	78337313	+	Silent	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	13	78337313	78337313	C	T	SNP	SLAIN1	ENST00000466548	human	ensembl	69_37n	+1	known	silent	c.1665	p.L555	1.000	NULL	NULL	-	no_errors	SLAIN1	HGNC	ENSG00000139737	105	0	0.00	71	23	24.47	-	-	-
SMURF2	0	genome.wustl.edu	37	17	62547752	62547752	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	17	62547752	62547752	C	T	SNP	SMURF2	ENST00000262435	human	ensembl	69_37n	-1	known	missense	c.1819	p.E607K	1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_WW_Rsp5_WWP,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	SMURF2	HGNC	ENSG00000108854	73	0	0.00	47	21	30.88	-	-	-
SNRPB	0	genome.wustl.edu	37	20	2446383	2446383	+	Missense_Mutation	SNP	T	T	C			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	20	2446383	2446383	T	C	SNP	SNRPB	ENST00000438552	human	ensembl	69_37n	-1	known	missense	c.238	p.M80V	0.994	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	pfam_Ribonucl_LSM,superfamily_LSM_dom,smart_Ribonucl_LSM_euk/arc,pirsf_snRNP-assoc_SmB/SmN	-	no_errors	SNRPB	HGNC	ENSG00000125835	42	0	0.00	39	13	25.00	-	-	-
SP110	0	genome.wustl.edu	37	2	231042265	231042265	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	231042265	231042265	C	T	SNP	SP110	ENST00000258381	human	ensembl	69_37n	-1	known	missense	c.1579	p.E527K	0.000	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	pfam_Sp100,pfam_SAND_dom,superfamily_SAND_dom-like,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_SAND_dom,smart_Znf_PHD,smart_Bromodomain,pfscan_Znf_PHD-finger,pfscan_SAND_dom	-	no_errors	SP110	HGNC	ENSG00000135899	107	1	0.93	94	24	20.34	-	-	-
STX4	0	genome.wustl.edu	37	16	31045531	31045531	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	16	31045531	31045531	C	T	SNP	STX4	ENST00000460668	human	ensembl	69_37n	+1	known	missense	c.139	p.R47W	0.972	NULL	NULL	-	no_errors	STX4	HGNC	ENSG00000103496	53	0	0.00	59	14	19.18	-	-	-
TAF1	0	genome.wustl.edu	37	X	70678200	70678200	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	X	70678200	70678200	A	-	DEL	TAF1	ENST00000449580	human	ensembl	69_37n	+1	known	frame_shift_del	c.5045	p.K1683fs	1.000	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1	HGNC	ENSG00000147133	118	1	0.84	95	34	25.95	-	-	-
TCAIM	0	genome.wustl.edu	37	3	44442753	44442753	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	44442753	44442753	G	A	SNP	TCAIM	ENST00000342649	human	ensembl	69_37n	+1	known	missense	c.1177	p.D393N	0.971	NULL	NULL	-	no_errors	TCAIM	HGNC	ENSG00000179152	62	0	0.00	45	6	11.76	-	-	-
TRERF1	0	genome.wustl.edu	37	6	42214210	42214210	+	Missense_Mutation	SNP	A	A	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	6	42214210	42214210	A	T	SNP	TRERF1	ENST00000541110	human	ensembl	69_37n	-1	known	missense	c.2789	p.I930N	1.000	superfamily_Homeodomain-like,smart_SANT/Myb	pfam_ELM2_dom,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_SANT/Myb,pfscan_ELM2_dom,pfscan_Znf_C2H2	-	no_errors	TRERF1	HGNC	ENSG00000124496	93	0	0.00	58	20	25.64	-	-	-
TRIM9	0	genome.wustl.edu	37	14	51467550	51467550	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	51467550	51467550	G	A	SNP	TRIM9	ENST00000298355	human	ensembl	69_37n	-1	known	missense	c.1315	p.P439S	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_SPRY_rcpt,pfam_Fibronectin_type3,pfam_Znf_B-box,pfam_Znf_C3HC4_RING-type,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,superfamily_Znf_FYVE_PHD,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM9	HGNC	ENSG00000100505	55	0	0.00	50	13	20.63	-	-	-
TRPM2	0	genome.wustl.edu	37	21	45833778	45833778	+	Silent	SNP	G	G	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	21	45833778	45833778	G	T	SNP	TRPM2	ENST00000300482	human	ensembl	69_37n	+1	known	silent	c.2967	p.V989	0.997	pfam_Ion_trans_dom	pfam_Ion_trans_dom,superfamily_NUDIX_hydrolase_dom-like	-	no_errors	TRPM2	HGNC	ENSG00000142185	34	0	0.00	36	16	30.77	-	-	-
TTN	0	genome.wustl.edu	37	2	179569262	179569262	+	Silent	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	2	179569262	179569262	G	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	silent	c.26205	p.I8735	0.219	superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	86	0	0.00	68	25	26.88	-	-	-
UBC	0	genome.wustl.edu	37	12	125397564	125397564	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	125397564	125397564	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.754	p.E252Q	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	73	0	0.00	51	11	17.74	-	-	-
UBC	0	genome.wustl.edu	37	12	125397588	125397588	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	12	125397588	125397588	C	G	SNP	UBC	ENST00000339647	human	ensembl	69_37n	-1	known	missense	c.730	p.E244Q	1.000	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup	pfam_Ubiquitin,pfam_SUMO,smart_Ubiquitin,pfscan_Ubiquitin_supergroup,prints_Ubiquitin_subgr	-	no_errors	UBC	HGNC	ENSG00000150991	68	0	0.00	47	9	16.07	-	-	-
USP4	0	genome.wustl.edu	37	3	49335319	49335319	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	49335319	49335319	G	A	SNP	USP4	ENST00000265560	human	ensembl	69_37n	-1	known	missense	c.1675	p.R559W	0.986	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP4	HGNC	ENSG00000114316	94	0	0.00	65	17	20.73	-	-	-
USP47	0	genome.wustl.edu	37	11	11979020	11979020	+	RNA	SNP	C	C	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	11	11979020	11979020	C	A	SNP	USP47	ENST00000305481	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	USP47	HGNC	ENSG00000170242	78	0	0.00	47	14	22.95	-	-	-
USP48	0	genome.wustl.edu	37	1	22032270	22032270	+	Silent	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	22032270	22032270	G	A	SNP	USP48	ENST00000308271	human	ensembl	69_37n	-1	known	silent	c.2334	p.H778	0.852	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19,pfscan_Ubiquitin_supergroup	-	no_errors	USP48	HGNC	ENSG00000090686	50	0	0.00	36	8	18.18	-	-	-
ZC3H12A	0	genome.wustl.edu	37	1	37947372	37947372	+	Missense_Mutation	SNP	G	G	A			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	1	37947372	37947372	G	A	SNP	ZC3H12A	ENST00000373082	human	ensembl	69_37n	+1	known	missense	c.754	p.E252K	1.000	pfam_RNase_Zc3h12	pfam_RNase_Zc3h12	-	no_errors	ZC3H12A	HGNC	ENSG00000163874	46	0	0.00	35	11	23.91	-	-	-
ZNF410	0	genome.wustl.edu	37	14	74358886	74358886	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	14	74358886	74358886	C	T	SNP	ZNF410	ENST00000555044	human	ensembl	69_37n	+1	known	missense	c.8	p.S3L	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF410	HGNC	ENSG00000119725	120	0	0.00	100	26	20.63	-	-	-
ZNF619	0	genome.wustl.edu	37	3	40529166	40529166	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	3	40529166	40529166	C	T	SNP	ZNF619	ENST00000447116	human	ensembl	69_37n	+1	known	nonsense	c.1285	p.Q429*	0.013	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF619	HGNC	ENSG00000177873	45	0	0.00	35	13	27.08	-	-	-
ZNF790	0	genome.wustl.edu	37	19	37309377	37309377	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	37309377	37309377	C	G	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1869	p.E623D	0.010	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	93	0	0.00	49	15	22.73	-	-	-
ZNF790	0	genome.wustl.edu	37	19	37309555	37309555	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2QI-01A-12D-A19Y-09	TCGA-AC-A2QI-10A-01D-A19Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	97840e8f-a4b6-45a8-abe4-592475224e7b	c7936190-316a-4fbd-9d93-6867e49fe6b6	19	37309555	37309555	C	T	SNP	ZNF790	ENST00000356725	human	ensembl	69_37n	-1	known	missense	c.1691	p.C564Y	0.413	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF790	HGNC	ENSG00000197863	23	0	0.00	20	7	25.93	-	-	-
