Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACACA	0	genome.wustl.edu	37	17	35641834	35641834	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	35641834	35641834	G	A	SNP	ACACA	ENST00000353139	human	ensembl	69_37n	-1	known	nonsense	c.376	p.R126*	1.000	superfamily_PreATP-grasp_fold	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACA	HGNC	ENSG00000132142	311	0	0.00	202	56	21.62	-	-	-
ADAM29	0	genome.wustl.edu	37	4	175897349	175897349	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	4	175897349	175897349	C	A	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	+1	known	missense	c.673	p.L225I	0.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	219	0	0.00	131	32	19.63	-	-	-
ADAMTS20	0	genome.wustl.edu	37	12	43824186	43824186	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	43824186	43824186	C	T	SNP	ADAMTS20	ENST00000389420	human	ensembl	69_37n	-1	known	missense	c.3350	p.C1117Y	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS20	HGNC	ENSG00000173157	67	0	0.00	49	14	22.22	-	-	-
ARMCX2	0	genome.wustl.edu	37	X	100910988	100910988	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	100910988	100910988	C	G	SNP	ARMCX2	ENST00000328766	human	ensembl	69_37n	-1	known	missense	c.1587	p.L529F	1.000	pfam_ARM-rpt_dom,superfamily_ARM-type_fold	pfam_ARM-rpt_dom,superfamily_ARM-type_fold,smart_Armadillo	-	no_errors	ARMCX2	HGNC	ENSG00000184867	385	0	0.00	417	94	18.29	-	-	-
ASCC3	0	genome.wustl.edu	37	6	101073157	101073157	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	6	101073157	101073157	G	A	SNP	ASCC3	ENST00000369162	human	ensembl	69_37n	-1	known	missense	c.4696	p.R1566C	1.000	pfscan_Helicase_C	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_AAA+_ATPase,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ASCC3	HGNC	ENSG00000112249	86	0	0.00	86	35	28.93	-	-	-
ASH1L	0	genome.wustl.edu	37	1	155451295	155451295	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	155451295	155451295	G	C	SNP	ASH1L	ENST00000368346	human	ensembl	69_37n	-1	known	missense	c.1366	p.L456V	0.908	NULL	pfam_SET_dom,pfam_BAH_dom,pfam_Bromodomain,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_Znf_FYVE_PHD,smart_AT_hook_DNA-bd_motif,smart_AWS,smart_SET_dom,smart_Bromodomain,smart_Znf_PHD,smart_BAH_dom,pfscan_AWS,pfscan_BAH_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Bromodomain	-	no_errors	ASH1L	HGNC	ENSG00000116539	219	0	0.00	200	63	23.95	-	-	-
ATP7A	0	genome.wustl.edu	37	X	77289124	77289124	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	77289124	77289124	G	C	SNP	ATP7A	ENST00000341514	human	ensembl	69_37n	+1	known	missense	c.3316	p.G1106R	1.000	pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,tigrfam_ATPase_P-typ_heavy-metal	pfam_HeavyMe-assoc_HMA,pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_HAD-like_dom,superfamily_HeavyMe-assoc_HMA,pfscan_HeavyMe-assoc_HMA,prints_ATPase_P-typ_cat/Cu-transptr,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_HG_scavenger,tigrfam_ATPase_P-typ_heavy-metal,tigrfam_ATPase_P-typ_ion-transptr,tigrfam_HMA_Cu_ion-bd	-	no_errors	ATP7A	HGNC	ENSG00000165240	223	0	0.00	212	43	16.86	-	-	-
ATRX	0	genome.wustl.edu	37	X	76912112	76912112	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	76912112	76912112	A	T	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.4152	p.F1384L	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	297	0	0.00	195	108	35.64	-	-	-
ATXN1	0	genome.wustl.edu	37	6	16327913	16327915	+	In_Frame_Del	DEL	TGA	TGA	-			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	TGA	TGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	6	16327913	16327915	TGA	-	DEL	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	in_frame_del	c.629_627	p.H209in_frame_del	0.021:0.019:0.017	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	8	0	0.00	5	3	37.50	-	-	-
CAD	0	genome.wustl.edu	37	2	27456981	27456982	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	27456981	27456982	-	C	INS	CAD	ENST00000264705	human	ensembl	69_37n	+1	known	frame_shift_ins	c.3505_3506	p.Q1172fs	1.000:1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_ATP-grasp_carboxylate-amine,pfam_Dala_Dala_lig_C,pfscan_ATP-grasp,tigrfam_CarbamoylP_synth_lsu	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_ssu_N,pfam_Asp/Orn_carbamoyltranf_P-bd,pfam_GATASE_1,pfam_Asp_carbamoyltransf_Asp/Orn-bd,pfam_CarbamoylP_synth_lsu_oligo,pfam_CarbamoylP_synth_lsu_N,pfam_ATP-grasp_carboxylate-amine,pfam_MGS-like_dom,pfam_Dala_Dala_lig_C,pfam_Amidohydro_1,superfamily_Asp/Orn_carbamoylTrfase,superfamily_CarbamoylP_synth_lsu_oligo,superfamily_CarbamoylP_synth_ssu_N,superfamily_PreATP-grasp_fold,superfamily_MGS-like_dom,superfamily_Metal-dep_hydrolase_composite,smart_MGS-like_dom,pfscan_ATP-grasp,prints_CbamoylP_synth_lsu_CPSase_dom,prints_Asp_carbamoyltransf_euk,prints_Asp/Orn_carbamoylTrfase,tigrfam_CarbamoylP_synth_lsu,tigrfam_CarbamoylP_synth_ssu,tigrfam_Asp_carbamoyltransf_euk	-	no_errors	CAD	HGNC	ENSG00000084774	36	0	0.00	36	4	10.00	-	-	-
CD99	0	genome.wustl.edu	37	X	2641359	2641359	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	2641359	2641359	A	T	SNP	CD99	ENST00000381192	human	ensembl	69_37n	+1	known	missense	c.315	p.K105N	0.001	pfam_CD99L2	pfam_CD99L2	-	no_errors	CD99	HGNC	ENSG00000002586	136	0	0.00	70	25	25.77	-	-	-
CNTN6	0	genome.wustl.edu	37	3	1369212	1369212	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	1369212	1369212	A	T	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	+1	known	missense	c.1155	p.Q385H	0.983	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	77	0	0.00	56	14	20.00	-	-	-
DGAT2L6	0	genome.wustl.edu	37	X	69424167	69424167	+	Silent	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	69424167	69424167	C	G	SNP	DGAT2L6	ENST00000333026	human	ensembl	69_37n	+1	known	silent	c.660	p.V220	0.988	pfam_DAGAT	pfam_DAGAT	-	no_errors	DGAT2L6	HGNC	ENSG00000184210	77	0	0.00	58	12	17.14	-	-	-
ENGASE	0	genome.wustl.edu	37	17	77079103	77079103	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	77079103	77079103	C	T	SNP	ENGASE	ENST00000579016	human	ensembl	69_37n	+1	known	missense	c.1040	p.S347L	1.000	pfam_Glyco_hydro_85,pfscan_BRCT_dom	pfam_Glyco_hydro_85,pfscan_BRCT_dom	-	no_errors	ENGASE	HGNC	ENSG00000167280	64	0	0.00	28	5	14.71	-	-	-
ERCC6	0	genome.wustl.edu	37	10	50684343	50684343	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	10	50684343	50684343	C	T	SNP	ERCC6	ENST00000355832	human	ensembl	69_37n	-1	known	missense	c.2300	p.R767H	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6	HGNC	ENSG00000225830	180	0	0.00	237	27	10.23	-	-	-
FAM47C	0	genome.wustl.edu	37	X	37027607	37027607	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	37027607	37027607	T	A	SNP	FAM47C	ENST00000358047	human	ensembl	69_37n	+1	known	missense	c.1124	p.V375E	0.024	NULL	NULL	-	no_errors	FAM47C	HGNC	ENSG00000198173	317	0	0.00	283	68	19.37	-	-	-
FIGN	0	genome.wustl.edu	37	2	164466086	164466086	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	164466086	164466086	G	C	SNP	FIGN	ENST00000333129	human	ensembl	69_37n	-1	known	missense	c.2256	p.N752K	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	FIGN	HGNC	ENSG00000182263	124	0	0.00	98	32	24.62	-	-	-
FPR3	0	genome.wustl.edu	37	19	52327516	52327516	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	19	52327516	52327516	G	A	SNP	FPR3	ENST00000339223	human	ensembl	69_37n	+1	known	missense	c.515	p.G172E	0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Frt_met_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Anphylx_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	FPR3	HGNC	ENSG00000187474	476	0	0.00	421	73	14.78	-	-	-
GABRG1	0	genome.wustl.edu	37	4	46060587	46060587	+	Silent	SNP	T	T	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	4	46060587	46060587	T	C	SNP	GABRG1	ENST00000295452	human	ensembl	69_37n	-1	known	silent	c.678	p.E226	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg1_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG1	HGNC	ENSG00000163285	134	0	0.00	139	23	14.20	-	-	-
GPR26	0	genome.wustl.edu	37	10	125447554	125447554	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	10	125447554	125447554	C	T	SNP	GPR26	ENST00000284674	human	ensembl	69_37n	+1	known	nonsense	c.892	p.R298*	1.000	pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srw,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR26	HGNC	ENSG00000154478	43	0	0.00	61	10	14.08	-	-	-
GPR64	0	genome.wustl.edu	37	X	19017264	19017264	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	19017264	19017264	C	G	SNP	GPR64	ENST00000379869	human	ensembl	69_37n	-1	known	missense	c.2464	p.G822R	1.000	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_GPS_dom,smart_GPS_dom,pfscan_GPS_dom,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like	-	no_errors	GPR64	HGNC	ENSG00000173698	300	1	0.33	275	79	22.32	-	-	-
HTR1B	0	genome.wustl.edu	37	6	78172233	78172233	+	Silent	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	6	78172233	78172233	G	A	SNP	HTR1B	ENST00000369947	human	ensembl	69_37n	-1	known	silent	c.888	p.D296	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_5HT1B_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_5HT1B_rcpt,prints_5HT_rcpt,prints_Adrnrgc_rcpt	-	no_errors	HTR1B	HGNC	ENSG00000135312	73	0	0.00	43	10	18.87	-	-	-
IARS	0	genome.wustl.edu	37	9	94985652	94985652	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	9	94985652	94985652	G	A	SNP	IARS	ENST00000375643	human	ensembl	69_37n	-1	known	nonsense	c.3529	p.Q1177*	1.000	NULL	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Methionyl/Leucyl_tRNA_Synth,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,prints_Ile-tRNA-synt,tigrfam_Ile-tRNA-synt	-	no_errors	IARS	HGNC	ENSG00000196305	113	0	0.00	32	19	37.25	-	-	-
KIAA0430	0	genome.wustl.edu	37	16	15724259	15724259	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	16	15724259	15724259	T	A	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.1454	p.H485L	1.000	pfam_NYN_limkain-b1	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	121	0	0.00	159	33	17.19	-	-	-
KIAA0895	0	genome.wustl.edu	37	7	36396564	36396564	+	Missense_Mutation	SNP	G	G	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	7	36396564	36396564	G	C	SNP	KIAA0895	ENST00000297063	human	ensembl	69_37n	-1	known	missense	c.814	p.L272V	0.834	NULL	pfam_DUF1704	-	no_errors	KIAA0895	HGNC	ENSG00000164542	110	0	0.00	39	31	44.29	-	-	-
KLHL28	0	genome.wustl.edu	37	14	45414398	45414398	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	14	45414398	45414398	C	T	SNP	KLHL28	ENST00000396128	human	ensembl	69_37n	-1	known	missense	c.734	p.R245H	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL28	HGNC	ENSG00000179454	183	0	0.00	160	31	16.23	-	-	-
KRT1	0	genome.wustl.edu	37	12	53071201	53071201	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	53071201	53071201	G	A	SNP	KRT1	ENST00000252244	human	ensembl	69_37n	-1	known	missense	c.1027	p.R343C	1.000	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_II	-	no_errors	KRT1	HGNC	ENSG00000167768	184	0	0.00	70	34	32.69	-	-	-
LAS1L	0	genome.wustl.edu	37	X	64737980	64737980	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	64737980	64737980	C	G	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.1814	p.R605T	0.029	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	60	0	0.00	55	12	17.91	-	-	-
LCMT2	0	genome.wustl.edu	37	15	43621247	43621247	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	43621247	43621247	G	A	SNP	LCMT2	ENST00000305641	human	ensembl	69_37n	-1	known	missense	c.1441	p.R481W	0.999	NULL	pfam_LCM_MeTrfase	-	no_errors	LCMT2	HGNC	ENSG00000168806	127	0	0.00	104	31	22.96	-	-	-
MALAT1	0	genome.wustl.edu	37	11	65266621	65266621	+	RNA	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	65266621	65266621	C	G	SNP	MALAT1	ENST00000534336	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	MALAT1	HGNC	ENSG00000251562	33	0	0.00	25	11	30.56	-	-	-
MCM3AP	0	genome.wustl.edu	37	21	47664999	47664999	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	21	47664999	47664999	C	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4760	p.R1587H	0.992	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	94	0	0.00	108	20	15.50	-	-	-
MFSD9	0	genome.wustl.edu	37	2	103334999	103334999	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	2	103334999	103334999	C	G	SNP	MFSD9	ENST00000258436	human	ensembl	69_37n	-1	known	missense	c.1305	p.E435D	0.998	superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,prints_Tet-R_TetA/multi-R_MdtG,pfscan_MFS_dom	-	no_errors	MFSD9	HGNC	ENSG00000135953	44	0	0.00	31	6	16.22	-	-	-
MICAL3	0	genome.wustl.edu	37	22	18384696	18384696	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	22	18384696	18384696	C	A	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.639	p.E213D	1.000	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	97	0	0.00	121	21	14.79	-	-	-
MST1P9	0	genome.wustl.edu	37	1	17083776	17083776	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	17083776	17083776	C	A	SNP	MST1P9	ENST00000334998	human	ensembl	69_37n	-1	known	missense	c.2021	p.R674L	1.000	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	MST1P9	HGNC	ENSG00000186715	50	0	0.00	24	8	25.00	-	-	-
NDUFV1	0	genome.wustl.edu	37	11	67378019	67378020	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	67378019	67378020	-	C	INS	NDUFV1	ENST00000322776	human	ensembl	69_37n	+1	known	frame_shift_ins	c.678_679	p.F228fs	1.000:1.000	pfam_NADH_UbQ_OxRdtase_51kDa_su,tigrfam_NADH-UbQ_OxRdtase_suF	pfam_NADH_UbQ_OxRdtase_51kDa_su,pfam_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,pfam_Soluble_ligand-bd,smart_NADH-UbQ_OxRdtase_Fsu_4Fe4S-bd,tigrfam_NADH-UbQ_OxRdtase_suF	-	no_errors	NDUFV1	HGNC	ENSG00000167792	33	0	0.00	10	2	16.67	-	-	-
OR5AK2	0	genome.wustl.edu	37	11	56757155	56757155	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	56757155	56757155	C	T	SNP	OR5AK2	ENST00000326855	human	ensembl	69_37n	+1	known	missense	c.767	p.S256F	0.001	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR5AK2	HGNC	ENSG00000181273	390	2	0.51	192	65	25.29	-	-	-
OSMR	0	genome.wustl.edu	37	5	38885552	38885552	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	38885552	38885552	A	C	SNP	OSMR	ENST00000274276	human	ensembl	69_37n	+1	known	missense	c.805	p.K269Q	0.000	superfamily_Fibronectin_type3	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	OSMR	HGNC	ENSG00000145623	242	0	0.00	268	48	15.19	-	-	-
PBX1	0	genome.wustl.edu	37	1	164776849	164776849	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	164776849	164776849	A	T	SNP	PBX1	ENST00000420696	human	ensembl	69_37n	+1	known	missense	c.772	p.N258Y	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	pfam_PBX,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain	-	no_errors	PBX1	HGNC	ENSG00000185630	269	0	0.00	395	59	13.00	-	-	-
PCDHGA3	0	genome.wustl.edu	37	5	140724179	140724179	+	Silent	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	140724179	140724179	G	A	SNP	PCDHGA3	ENST00000253812	human	ensembl	69_37n	+1	known	silent	c.579	p.E193	0.987	superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA3	HGNC	ENSG00000254245	165	0	0.00	140	46	24.73	-	-	-
PLXNC1	0	genome.wustl.edu	37	12	94563009	94563009	+	Silent	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	94563009	94563009	C	T	SNP	PLXNC1	ENST00000258526	human	ensembl	69_37n	+1	known	silent	c.1143	p.G381	1.000	superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_Plexin_repeat,pfam_IPT_TIG_rcpt,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Plexin-like_fold,superfamily_Ig_E-set,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNC1	HGNC	ENSG00000136040	185	0	0.00	142	25	14.97	-	-	-
PON2	0	genome.wustl.edu	37	7	95041063	95041063	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	7	95041063	95041063	G	T	SNP	PON2	ENST00000536183	human	ensembl	69_37n	-1	known	missense	c.459	p.N153K	1.000	prints_Arylesterase	pfam_Arylesterase,pfam_SGL,prints_Arylesterase,prints_Paraoxonase2	-	no_errors	PON2	HGNC	ENSG00000105854	143	0	0.00	64	29	31.18	-	-	-
RBBP9	0	genome.wustl.edu	37	20	18474608	18474608	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	20	18474608	18474608	G	T	SNP	RBBP9	ENST00000337227	human	ensembl	69_37n	-1	known	missense	c.242	p.A81D	1.000	pfam_DUF1234_Hydrolase	pfam_DUF1234_Hydrolase	-	no_errors	RBBP9	HGNC	ENSG00000089050	93	0	0.00	76	22	22.45	-	-	-
RBFOX1	0	genome.wustl.edu	37	16	7629860	7629860	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	16	7629860	7629860	C	T	SNP	RBFOX1	ENST00000547372	human	ensembl	69_37n	+1	known	missense	c.481	p.R161W	1.000	smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	pfam_Fox-1_C_dom,pfam_RRM_dom,smart_RRM_dom,pirsf_RNA-bd_Fox-1,pfscan_RRM_dom	-	no_errors	RBFOX1	HGNC	ENSG00000078328	103	0	0.00	113	24	17.39	-	-	-
RGL3	0	genome.wustl.edu	37	19	11512791	11512791	+	Silent	SNP	G	G	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	19	11512791	11512791	G	C	SNP	RGL3	ENST00000393423	human	ensembl	69_37n	-1	known	silent	c.1380	p.A460	0.995	superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL3	HGNC	ENSG00000205517	23	0	0.00	15	5	25.00	-	-	-
SEMA5A	0	genome.wustl.edu	37	5	9063053	9063053	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	9063053	9063053	G	T	SNP	SEMA5A	ENST00000382496	human	ensembl	69_37n	-1	known	missense	c.2464	p.P822T	1.000	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Semaphorin/CD100_Ag,pfam_Thrombospondin_1_rpt,superfamily_Semaphorin/CD100_Ag,superfamily_Thrombospondin_1_rpt,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_Thrombospondin_1_rpt,pfscan_Semaphorin/CD100_Ag,pfscan_Thrombospondin_1_rpt	-	no_errors	SEMA5A	HGNC	ENSG00000112902	48	0	0.00	44	12	21.43	-	-	-
SFI1	0	genome.wustl.edu	37	22	31971257	31971260	+	Frame_Shift_Del	DEL	ATAC	ATAC	-			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	ATAC	ATAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	22	31971257	31971260	ATAC	-	DEL	SFI1	ENST00000400288	human	ensembl	69_37n	+1	known	frame_shift_del	c.963_966	p.Y322fs	0.006:0.016:0.395:0.766	NULL	superfamily_Cyclin-like	-	no_errors	SFI1	HGNC	ENSG00000198089	114	0	0.00	97	37	27.61	-	-	-
SHROOM2	0	genome.wustl.edu	37	X	9863334	9863335	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	X	9863334	9863335	GC	-	DEL	SHROOM2	ENST00000380913	human	ensembl	69_37n	+1	known	frame_shift_del	c.1386_1387	p.L463fs	0.000:0.000	NULL	pfam_ASD2,pfam_ASD1,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM2	HGNC	ENSG00000146950	15	0	0.00	9	4	30.77	-	-	-
SIN3A	0	genome.wustl.edu	37	15	75688794	75688794	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	75688794	75688794	A	G	SNP	SIN3A	ENST00000360439	human	ensembl	69_37n	-1	known	missense	c.1898	p.L633P	1.000	pfam_HDAC_interact,smart_HDAC_interact	pfam_PAH,pfam_HDAC_interact,superfamily_PAH,smart_HDAC_interact	-	no_errors	SIN3A	HGNC	ENSG00000169375	185	0	0.00	84	70	45.45	-	-	-
SLCO1B3	0	genome.wustl.edu	37	12	21033820	21033820	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	21033820	21033820	C	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	+1	known	missense	c.1363	p.P455A	0.751	pfam_OA_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	226	0	0.00	114	46	28.75	-	-	-
SORL1	0	genome.wustl.edu	37	11	121416050	121416051	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	11	121416050	121416051	-	C	INS	SORL1	ENST00000260197	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1963_1964	p.H657fs	1.000:0.997	smart_VPS10	pfam_LDrepeatLR_classA_rpt,pfam_Fibronectin_type3,pfam_LDLR_classB_rpt,superfamily_Fibronectin_type3,superfamily_LDrepeatLR_classA_rpt,smart_VPS10,smart_LDLR_classB_rpt,smart_LDrepeatLR_classA_rpt,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	SORL1	HGNC	ENSG00000137642	41	0	0.00	17	2	10.53	-	-	-
SPECC1	0	genome.wustl.edu	37	17	20135652	20135652	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	20135652	20135652	G	A	SNP	SPECC1	ENST00000261503	human	ensembl	69_37n	+1	known	missense	c.2285	p.R762Q	0.949	NULL	pfam_CH-domain,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain	-	no_errors	SPECC1	HGNC	ENSG00000128487	40	0	0.00	26	12	31.58	-	-	-
TFCP2	0	genome.wustl.edu	37	12	51501078	51501078	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	51501078	51501078	G	A	SNP	TFCP2	ENST00000257915	human	ensembl	69_37n	-1	known	nonsense	c.769	p.R257*	1.000	pfam_CP2	pfam_CP2,superfamily_SAM/pointed	-	no_errors	TFCP2	HGNC	ENSG00000135457	337	0	0.00	241	63	20.72	-	-	-
TMC5	0	genome.wustl.edu	37	16	19490813	19490813	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	16	19490813	19490813	T	A	SNP	TMC5	ENST00000396229	human	ensembl	69_37n	+1	known	missense	c.2230	p.S744T	0.833	pfam_TMC	pfam_TMC	-	no_errors	TMC5	HGNC	ENSG00000103534	306	0	0.00	260	122	31.77	-	-	-
TMEM43	0	genome.wustl.edu	37	3	14170983	14170983	+	Silent	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	14170983	14170983	G	A	SNP	TMEM43	ENST00000306077	human	ensembl	69_37n	+1	known	silent	c.84	p.R28	0.997	NULL	pfam_TMEM43_fam	-	no_errors	TMEM43	HGNC	ENSG00000170876	63	0	0.00	84	10	10.64	-	-	-
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	115	0	0.00	26	72	73.47	-	-	-
TP53BP1	0	genome.wustl.edu	37	15	43708431	43708431	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	15	43708431	43708431	A	C	SNP	TP53BP1	ENST00000382044	human	ensembl	69_37n	-1	known	missense	c.4865	p.I1622S	1.000	NULL	pfam_53-BP1_Tudor,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TP53BP1	HGNC	ENSG00000067369	246	0	0.00	116	87	42.86	-	-	-
TRA2B	0	genome.wustl.edu	37	3	185641773	185641773	+	Splice_Site	SNP	C	C	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	185641773	185641773	C	G	SNP	TRA2B	ENST00000453386	human	ensembl	69_37n	-1	known	splice_site	c.334-1	e4-1	1.000	-	-	-	no_errors	TRA2B	HGNC	ENSG00000136527	98	0	0.00	106	16	13.11	-	-	-
UBE2D2	0	genome.wustl.edu	37	5	138994342	138994342	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	138994342	138994342	C	T	SNP	UBE2D2	ENST00000398733	human	ensembl	69_37n	+1	known	missense	c.181	p.P61S	1.000	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	pfam_UBQ-conjugat_E2,superfamily_UBQ-conjugating_enzyme/RWD,pfscan_UBQ-conjugat_E2	-	no_errors	UBE2D2	HGNC	ENSG00000131508	198	1	0.50	156	31	16.58	-	-	-
USP15	0	genome.wustl.edu	37	12	62749215	62749215	+	Missense_Mutation	SNP	A	A	G			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	12	62749215	62749215	A	G	SNP	USP15	ENST00000280377	human	ensembl	69_37n	+1	known	missense	c.874	p.S292G	1.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,superfamily_RNA3'P_cycl/enolpyr_Trfase_a/b,smart_Pept_C19_DUSP,pfscan_Peptidase_C19	-	no_errors	USP15	HGNC	ENSG00000135655	99	0	0.00	44	40	47.62	-	-	-
VCPIP1	0	genome.wustl.edu	37	8	67579088	67579089	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	8	67579088	67579089	-	C	INS	VCPIP1	ENST00000310421	human	ensembl	69_37n	-1	known	frame_shift_ins	c.106_105	p.L35fs	1.000:0.991	NULL	pfam_OTU,pfscan_OTU	-	no_errors	VCPIP1	HGNC	ENSG00000175073	14	0	0.00	29	4	12.12	-	-	-
VGLL3	0	genome.wustl.edu	37	3	87017995	87017995	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	3	87017995	87017995	G	A	SNP	VGLL3	ENST00000398399	human	ensembl	69_37n	-1	known	missense	c.682	p.R228W	1.000	NULL	pfam_Vg_Tdu,smart_TDU_repeat	-	no_errors	VGLL3	HGNC	ENSG00000206538	81	0	0.00	103	30	22.56	-	-	-
VPS13B	0	genome.wustl.edu	37	8	100160153	100160153	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	8	100160153	100160153	T	C	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	+1	known	missense	c.1928	p.V643A	1.000	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	409	0	0.00	848	202	19.20	-	-	-
WNT9A	0	genome.wustl.edu	37	1	228111953	228111954	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	1	228111953	228111954	-	C	INS	WNT9A	ENST00000272164	human	ensembl	69_37n	-1	known	frame_shift_ins	c.501_500	p.C168fs	1.000:1.000	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt14	-	no_errors	WNT9A	HGNC	ENSG00000143816	25	0	0.00	21	3	12.50	-	-	-
ZNF366	0	genome.wustl.edu	37	5	71752236	71752236	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A03O-01A-11W-A019-09	TCGA-AO-A03O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1578b356-7f42-4722-bc54-cd5f37954f6a	4b2392a1-ce32-47dd-83d2-be2342be7a58	5	71752236	71752236	A	T	SNP	ZNF366	ENST00000318442	human	ensembl	69_37n	-1	known	missense	c.1519	p.C507S	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF366	HGNC	ENSG00000178175	191	0	0.00	120	46	27.38	-	-	-
