Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CDH11	0	genome.wustl.edu	37	16	65032486	65032486	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	16	65032486	65032486	C	T	SNP	CDH11	ENST00000268603	human	ensembl	69_37n	-1	known	missense	c.502	p.V168M	1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin,prints_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH11	HGNC	ENSG00000140937	295	0	0.00	46	95	67.38	-	-	-
CDH17	0	genome.wustl.edu	37	8	95158390	95158391	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	8	95158390	95158391	-	C	INS	CDH17	ENST00000027335	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1933_1932	p.S644fs	0.027:0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH17	HGNC	ENSG00000079112	121	0	0.00	113	49	30.25	-	-	-
COL7A1	0	genome.wustl.edu	37	3	48609590	48609590	+	Silent	SNP	G	G	A			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	48609590	48609590	G	A	SNP	COL7A1	ENST00000328333	human	ensembl	69_37n	-1	known	silent	c.6993	p.D2331	0.990	pfam_Collagen	pfam_Collagen,pfam_Fibronectin_type3,pfam_VWF_A,pfam_Prot_inh_Kunz-m,superfamily_Fibronectin_type3,superfamily_Prot_inh_Kunz-m,smart_VWF_A,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_VWF_A,pfscan_Prot_inh_Kunz-m,prints_Prot_inh_Kunz-m	-	no_errors	COL7A1	HGNC	ENSG00000114270	35	0	0.00	19	6	24.00	-	-	-
GSPT2	0	genome.wustl.edu	37	X	51488353	51488353	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	X	51488353	51488353	A	C	SNP	GSPT2	ENST00000340438	human	ensembl	69_37n	+1	known	missense	c.1631	p.H544P	1.000	pfam_Transl_elong_EFTu/EF1A_C,superfamily_Transl_elong_EF1A/Init_IF2_C	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,pfam_Ataxin-2_C,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd	-	no_errors	GSPT2	HGNC	ENSG00000189369	286	0	0.00	162	125	43.40	-	-	-
MCMBP	0	genome.wustl.edu	37	10	121591584	121591584	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	121591584	121591584	C	T	SNP	MCMBP	ENST00000360003	human	ensembl	69_37n	-1	known	missense	c.1742	p.R581Q	1.000	pfam_MCM_complex-bd	pfam_MCM_complex-bd	-	no_errors	MCMBP	HGNC	ENSG00000197771	123	0	0.00	99	36	26.67	-	-	-
NIM1	0	genome.wustl.edu	37	5	43277278	43277278	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	5	43277278	43277278	G	A	SNP	NIM1	ENST00000326035	human	ensembl	69_37n	+1	known	missense	c.412	p.E138K	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	AC114947.1	Clone_based_vega_gene	ENSG00000177453	367	0	0.00	165	106	39.11	-	-	-
NRXN2	0	genome.wustl.edu	37	11	64457918	64457919	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	11	64457918	64457919	-	C	INS	NRXN2	ENST00000265459	human	ensembl	69_37n	-1	known	frame_shift_ins	c.809_808	p.A270fs	1.000:1.000	NULL	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN2	HGNC	ENSG00000110076	27	0	0.00	23	3	11.54	-	-	-
OR2G3	0	genome.wustl.edu	37	1	247769321	247769321	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	247769321	247769321	C	T	SNP	OR2G3	ENST00000320002	human	ensembl	69_37n	+1	known	missense	c.434	p.A145V	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2G3	HGNC	ENSG00000177476	586	0	0.00	353	250	41.46	-	-	-
OR2T33	0	genome.wustl.edu	37	1	248436408	248436408	+	Missense_Mutation	SNP	C	C	A			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	1	248436408	248436408	C	A	SNP	OR2T33	ENST00000318021	human	ensembl	69_37n	-1	known	missense	c.709	p.A237S	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T33	HGNC	ENSG00000177212	222	0	0.00	142	82	36.61	-	-	-
OVCH1	0	genome.wustl.edu	37	12	29604408	29604408	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	12	29604408	29604408	C	T	SNP	OVCH1	ENST00000318184	human	ensembl	69_37n	-1	known	nonsense	c.2625	p.W875*	0.802	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_Peptidase_S1_S6,pfam_CUB,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_CUB,smart_Peptidase_S1_S6,smart_CUB,prints_Peptidase_S1A,pfscan_CUB,pfscan_Peptidase_S1_S6	-	no_errors	OVCH1	HGNC	ENSG00000187950	63	0	0.00	60	32	34.78	-	-	-
PFKP	0	genome.wustl.edu	37	10	3172105	3172106	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	3172105	3172106	-	G	INS	PFKP	ENST00000381125	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1778_1779	p.L596fs	1.000:1.000	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,tigrfam_6-phosphofructokinase_euk	pfam_Phosphofructokinase_dom,superfamily_Phosphofructokinase_dom,pirsf_6-phosphofructokinase_euk,prints_Phosphofructokinase,tigrfam_6-phosphofructokinase_euk	-	no_errors	PFKP	HGNC	ENSG00000067057	24	0	0.00	13	2	13.33	-	-	-
PRICKLE2	0	genome.wustl.edu	37	3	64133064	64133064	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	3	64133064	64133064	C	T	SNP	PRICKLE2	ENST00000295902	human	ensembl	69_37n	-1	known	missense	c.1102	p.D368N	1.000	NULL	pfam_PET_domain,pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	PRICKLE2	HGNC	ENSG00000163637	108	0	0.00	34	40	54.05	-	-	-
PTAR1	0	genome.wustl.edu	37	9	72338284	72338284	+	Missense_Mutation	SNP	A	A	C			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	9	72338284	72338284	A	C	SNP	PTAR1	ENST00000340434	human	ensembl	69_37n	-1	known	missense	c.905	p.L302R	1.000	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	pfam_Prenyl_trans_a,pfscan_Prenyl_trans_a	-	no_errors	PTAR1	HGNC	ENSG00000188647	341	0	0.00	227	118	34.20	-	-	-
SLC45A4	0	genome.wustl.edu	37	8	142228731	142228731	+	Silent	SNP	G	G	A			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	8	142228731	142228731	G	A	SNP	SLC45A4	ENST00000517878	human	ensembl	69_37n	-1	known	silent	c.1008	p.H336	0.363	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC45A4	HGNC	ENSG00000022567	25	0	0.00	1	12	85.71	-	-	-
SLC4A4	0	genome.wustl.edu	37	4	72429510	72429510	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	4	72429510	72429510	T	C	SNP	SLC4A4	ENST00000264485	human	ensembl	69_37n	+1	known	missense	c.3100	p.S1034P	1.000	tigrfam_HCO3_transpt_euk	pfam_HCO3_transpt_C,pfam_HCO3_transpt_cyt,superfamily_PTrfase/Anion_transptr,prints_HCO3_transpt_euk,prints_Na/HCO3_transpt,tigrfam_HCO3_transpt_euk	-	no_errors	SLC4A4	HGNC	ENSG00000080493	186	0	0.00	120	84	41.18	-	-	-
SYNPO2L	0	genome.wustl.edu	37	10	75408227	75408227	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A0JI-01A-21W-A100-09	TCGA-AO-A0JI-10A-01W-A100-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	861297ec-2c88-4717-ae63-eb8e21fe8c52	f1f91ae3-80bd-40ed-b495-d8dd96299105	10	75408227	75408227	G	A	SNP	SYNPO2L	ENST00000394810	human	ensembl	69_37n	-1	known	missense	c.1183	p.R395C	1.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SYNPO2L	HGNC	ENSG00000166317	33	0	0.00	26	5	16.13	-	-	-
