Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APC	0	genome.wustl.edu	37	5	112177283	112177283	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	112177283	112177283	G	A	SNP	APC	ENST00000257430	human	ensembl	69_37n	+1	known	missense	c.5992	p.E1998K	1.000	NULL	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	238	0	0.00	202	27	11.79	-	-	-
ARHGAP26	0	genome.wustl.edu	37	5	142150475	142150475	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	5	142150475	142150475	T	C	SNP	ARHGAP26	ENST00000274498	human	ensembl	69_37n	+1	known	missense	c.149	p.L50P	1.000	pfam_IRSp53/MIM_homology_IMD	pfam_RhoGAP_dom,pfam_SH3_domain,pfam_SH3_2,pfam_IRSp53/MIM_homology_IMD,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_RhoGAP_dom,smart_SH3_domain,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_RhoGAP_dom	-	no_errors	ARHGAP26	HGNC	ENSG00000145819	38	0	0.00	26	4	12.90	-	-	-
CARD16	0	genome.wustl.edu	37	11	104915136	104915136	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	11	104915136	104915136	G	A	SNP	CARD16	ENST00000375706	human	ensembl	69_37n	-1	known	missense	c.257	p.T86M	0.000	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD16	HGNC	ENSG00000204397	320	0	0.00	327	42	11.35	-	-	-
DMD	0	genome.wustl.edu	37	X	31525503	31525503	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	X	31525503	31525503	A	-	DEL	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	frame_shift_del	c.8285	p.I2762fs	1.000	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	667	0	0.00	470	77	13.70	-	-	-
HS6ST1	0	genome.wustl.edu	37	2	129025860	129025860	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	2	129025860	129025860	C	T	SNP	HS6ST1	ENST00000259241	human	ensembl	69_37n	-1	known	missense	c.1112	p.R371H	1.000	NULL	pfam_Sulfotransferase	-	no_errors	HS6ST1	HGNC	ENSG00000136720	24	0	0.00	29	5	14.71	-	-	-
KDM4A	0	genome.wustl.edu	37	1	44137307	44137307	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	1	44137307	44137307	C	T	SNP	KDM4A	ENST00000372396	human	ensembl	69_37n	+1	known	missense	c.1495	p.L499F	0.950	NULL	pfam_JmjC_dom,pfam_TF_JmjN,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_JmjC_dom,smart_Znf_PHD,smart_Tudor,pfscan_TF_JmjN,pfscan_JmjC_dom	-	no_errors	KDM4A	HGNC	ENSG00000066135	268	0	0.00	216	24	10.00	-	-	-
MAGIX	0	genome.wustl.edu	37	X	49021218	49021218	+	Silent	SNP	A	A	T			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	X	49021218	49021218	A	T	SNP	MAGIX	ENST00000412696	human	ensembl	69_37n	+1	known	silent	c.297	p.T99	0.000	superfamily_PDZ	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	MAGIX	HGNC	ENSG00000017621	93	0	0.00	107	16	12.80	-	-	-
MIR486	0	genome.wustl.edu	37	8	41517976	41517976	+	RNA	SNP	G	G	T			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	8	41517976	41517976	G	T	SNP	MIR486	ENST00000408108	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	MIR486	HGNC	ENSG00000221035	19	0	0.00	10	4	28.57	-	-	-
PDCD6IP	0	genome.wustl.edu	37	3	33855109	33855109	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	3	33855109	33855109	C	T	SNP	PDCD6IP	ENST00000457054	human	ensembl	69_37n	+1	known	missense	c.323	p.S108F	1.000	pfam_BRO1_dom,pfscan_BRO1_dom	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	496	0	0.00	241	28	10.41	-	-	-
PHACTR3	0	genome.wustl.edu	37	20	58322833	58322833	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	20	58322833	58322833	G	A	SNP	PHACTR3	ENST00000371015	human	ensembl	69_37n	+1	known	missense	c.301	p.G101S	0.037	smart_RPEL_repeat,pfscan_RPEL_repeat	pfam_RPEL_repeat,smart_RPEL_repeat,pfscan_RPEL_repeat	-	no_errors	PHACTR3	HGNC	ENSG00000087495	255	0	0.00	269	31	10.30	-	-	-
PRKD2	0	genome.wustl.edu	37	19	47204110	47204110	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	47204110	47204110	T	C	SNP	PRKD2	ENST00000291281	human	ensembl	69_37n	-1	known	missense	c.1067	p.E356G	0.854	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_Kinase-like_dom,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_DAG/PE-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKD2	HGNC	ENSG00000105287	52	0	0.00	57	14	19.72	-	-	-
RGPD3	0	genome.wustl.edu	37	2	107041128	107041128	+	Silent	SNP	G	G	A			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	2	107041128	107041128	G	A	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	silent	c.3295	p.L1099	1.000	pfam_Ran_bind_dom,smart_Ran_bind_dom,pfscan_Ran_bind_dom	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	279	0	0.00	177	30	14.49	-	-	-
SLC1A6	0	genome.wustl.edu	37	19	15063812	15063812	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	15063812	15063812	A	G	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.1427	p.M476T	1.000	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	61	0	0.00	69	13	15.85	-	-	-
SYNE2	0	genome.wustl.edu	37	14	64557671	64557671	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	14	64557671	64557671	A	G	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	+1	known	missense	c.11881	p.M3961V	0.003	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	161	0	0.00	80	11	12.09	-	-	-
ZNF565	0	genome.wustl.edu	37	19	36673496	36673496	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AX-01A-11D-A12Q-09	TCGA-AR-A1AX-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	71a3cf72-3539-4ade-97d1-6a1bd1ee4205	9bb2ccce-9687-4194-b8c5-207e5f18bc1e	19	36673496	36673496	G	A	SNP	ZNF565	ENST00000304116	human	ensembl	69_37n	-1	known	missense	c.1372	p.R458C	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF565	HGNC	ENSG00000196357	249	0	0.00	263	33	11.15	-	-	-
