Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS13	0	genome.wustl.edu	37	9	136291344	136291344	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	9	136291344	136291344	A	T	SNP	ADAMTS13	ENST00000371929	human	ensembl	69_37n	+1	known	missense	c.565	p.N189Y	0.991	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,superfamily_CUB,smart_ADAM_Cys-rich,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS13	HGNC	ENSG00000160323	36	0	0.00	38	9	19.15	-	-	-
ATP13A4	0	genome.wustl.edu	37	3	193220428	193220428	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	193220428	193220428	C	A	SNP	ATP13A4	ENST00000342695	human	ensembl	69_37n	-1	known	missense	c.235	p.D79Y	1.000	tigrfam_ATPase_P-typ_unknown-pump-sp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_unknown-pump-sp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP13A4	HGNC	ENSG00000127249	44	0	0.00	21	42	66.67	-	-	-
C16orf85	0	genome.wustl.edu	37	16	88620345	88620345	+	Silent	SNP	A	A	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	16	88620345	88620345	A	C	SNP	C16orf85	ENST00000378416	human	ensembl	69_37n	-1	known	silent	c.285	p.R95	0.001	NULL	NULL	-	no_errors	C16orf85	HGNC	ENSG00000205036	26	0	0.00	46	7	13.21	-	-	-
COL18A1	0	genome.wustl.edu	37	21	46875483	46875483	+	Silent	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	21	46875483	46875483	G	A	SNP	COL18A1	ENST00000359759	human	ensembl	69_37n	+1	known	silent	c.39	p.L13	0.999	pfam_DUF959_COL18_N	pfam_Collagenase_NC10/endostatin,pfam_DUF959_COL18_N,pfam_Collagen,pfam_Frizzled_dom,superfamily_C-type_lectin_fold,superfamily_ConA-like_lec_gl,superfamily_Frizzled_dom,smart_Frizzled_dom,smart_Laminin_G,pfscan_Frizzled_dom	-	no_errors	COL18A1	HGNC	ENSG00000182871	25	0	0.00	20	9	30.00	-	-	-
COL4A4	0	genome.wustl.edu	37	2	227979409	227979409	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	227979409	227979409	G	A	SNP	COL4A4	ENST00000396625	human	ensembl	69_37n	-1	known	missense	c.493	p.H165Y	0.846	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A4	HGNC	ENSG00000081052	81	0	0.00	74	21	22.11	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950261	16950261	+	RNA	SNP	G	G	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	16950261	16950261	G	C	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.687	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	15	0	0.00	12	7	36.84	-	-	-
CXorf40A	0	genome.wustl.edu	37	X	148628334	148628334	+	Silent	SNP	C	C	G			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	X	148628334	148628334	C	G	SNP	CXorf40A	ENST00000359293	human	ensembl	69_37n	+1	known	silent	c.303	p.P101	0.000	superfamily_PUA-like_domain	superfamily_PUA-like_domain	-	no_errors	CXorf40A	HGNC	ENSG00000197620	84	0	0.00	87	32	26.89	-	-	-
DEFB131	0	genome.wustl.edu	37	4	9446286	9446286	+	Silent	SNP	A	A	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	9446286	9446286	A	C	SNP	DEFB131	ENST00000334879	human	ensembl	69_37n	+1	known	silent	c.27	p.G9	0.021	NULL	NULL	-	no_errors	DEFB131	HGNC	ENSG00000186146	120	0	0.00	84	40	32.26	-	-	-
DNAH11	0	genome.wustl.edu	37	7	21698446	21698446	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	21698446	21698446	A	C	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	+1	known	missense	c.5140	p.T1714P	0.863	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	41	0	0.00	39	16	29.09	-	-	-
DNAH12	0	genome.wustl.edu	37	3	57388140	57388140	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	57388140	57388140	G	A	SNP	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	missense	c.6908	p.P2303L	0.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	43	0	0.00	36	21	36.84	-	-	-
ERCC6L	0	genome.wustl.edu	37	X	71426994	71426994	+	Silent	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	X	71426994	71426994	G	A	SNP	ERCC6L	ENST00000334463	human	ensembl	69_37n	-1	known	silent	c.1623	p.V541	0.960	pfam_Helicase_C,smart_Helicase_C,pfscan_Helicase_C	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_TPR-contain_dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ERCC6L	HGNC	ENSG00000186871	46	0	0.00	32	20	38.46	-	-	-
GINS3	0	genome.wustl.edu	37	16	58438557	58438557	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	16	58438557	58438557	G	T	SNP	GINS3	ENST00000426538	human	ensembl	69_37n	+1	known	missense	c.692	p.G231V	1.000	NULL	pfam_GINS_complex	-	no_errors	GINS3	HGNC	ENSG00000181938	44	0	0.00	45	17	27.42	-	-	-
GPR148	0	genome.wustl.edu	37	2	131486925	131486925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	131486925	131486925	C	-	DEL	GPR148	ENST00000309926	human	ensembl	69_37n	+1	known	frame_shift_del	c.201	p.L69fs	0.992	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR148	HGNC	ENSG00000173302	29	0	0.00	36	10	21.74	-	-	-
IDE	0	genome.wustl.edu	37	10	94235707	94235707	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	94235707	94235707	C	G	SNP	IDE	ENST00000265986	human	ensembl	69_37n	-1	known	missense	c.1929	p.K643N	1.000	superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	IDE	HGNC	ENSG00000119912	45	0	0.00	52	10	15.62	-	-	-
IKBKAP	0	genome.wustl.edu	37	9	111674571	111674572	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	9	111674571	111674572	AG	-	DEL	IKBKAP	ENST00000374647	human	ensembl	69_37n	-1	known	frame_shift_del	c.1162_1161	p.L388fs	0.949:1.000	pfam_IKI3,pirsf_IKI3	pfam_IKI3,superfamily_ARM-type_fold,superfamily_UBA-like,pirsf_IKI3	-	no_errors	IKBKAP	HGNC	ENSG00000070061	21	0	0.00	19	10	34.48	-	-	-
INHA	0	genome.wustl.edu	37	2	220437229	220437229	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	220437229	220437229	G	A	SNP	INHA	ENST00000243786	human	ensembl	69_37n	+1	known	missense	c.133	p.A45T	0.000	pirsf_Inhibin_asu_subgr	pfam_TGF-b_C,smart_TGF-b_C,pirsf_Inhibin_asu_subgr,prints_Inhibin_asu	-	no_errors	INHA	HGNC	ENSG00000123999	14	0	0.00	14	10	41.67	-	-	-
LAP3	0	genome.wustl.edu	37	4	17585198	17585198	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	17585198	17585198	G	C	SNP	LAP3	ENST00000226299	human	ensembl	69_37n	+1	known	missense	c.472	p.G158R	0.999	pfam_Peptidase_M17_N	pfam_Peptidase_M17_C,pfam_Peptidase_M17_N,prints_Peptidase_M17	-	no_errors	LAP3	HGNC	ENSG00000002549	61	0	0.00	51	29	36.25	-	-	-
MANEA	0	genome.wustl.edu	37	6	96053674	96053674	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	6	96053674	96053674	C	T	SNP	MANEA	ENST00000358812	human	ensembl	69_37n	+1	known	missense	c.782	p.A261V	0.000	NULL	superfamily_Glycoside_hydrolase_SF	-	no_errors	MANEA	HGNC	ENSG00000172469	84	0	0.00	93	16	14.68	-	-	-
MAP4K1	0	genome.wustl.edu	37	19	39087977	39087977	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	19	39087977	39087977	G	A	SNP	MAP4K1	ENST00000591517	human	ensembl	69_37n	-1	known	missense	c.1826	p.A609V	0.039	pfam_Citron,smart_Citron	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP4K1	HGNC	ENSG00000104814	24	0	0.00	42	10	19.23	-	-	-
MED20	0	genome.wustl.edu	37	6	41874991	41874991	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	6	41874991	41874991	C	T	SNP	MED20	ENST00000265350	human	ensembl	69_37n	-1	known	missense	c.458	p.C153Y	1.000	pfam_Mediator_Med20	pfam_Mediator_Med20	-	no_errors	MED20	HGNC	ENSG00000124641	33	0	0.00	47	8	14.55	-	-	-
MYH8	0	genome.wustl.edu	37	17	10318441	10318441	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	17	10318441	10318441	A	G	SNP	MYH8	ENST00000403437	human	ensembl	69_37n	-1	known	missense	c.797	p.I266T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Prefoldin,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH8	HGNC	ENSG00000133020	78	0	0.00	39	21	35.00	-	-	-
MYO3A	0	genome.wustl.edu	37	10	26459429	26459429	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	26459429	26459429	A	C	SNP	MYO3A	ENST00000265944	human	ensembl	69_37n	+1	known	missense	c.3359	p.D1120A	0.056	NULL	pfam_Myosin_head_motor_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_IQ_motif_EF-hand-BS,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_Prot_kinase_cat_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO3A	HGNC	ENSG00000095777	46	0	0.00	45	10	18.18	-	-	-
NEK5	0	genome.wustl.edu	37	13	52693487	52693487	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	13	52693487	52693487	G	A	SNP	NEK5	ENST00000355568	human	ensembl	69_37n	-1	known	missense	c.182	p.P61L	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK5	HGNC	ENSG00000197168	97	0	0.00	33	31	48.44	-	-	-
NFXL1	0	genome.wustl.edu	37	4	47877233	47877233	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	4	47877233	47877233	C	A	SNP	NFXL1	ENST00000381538	human	ensembl	69_37n	-1	known	missense	c.2157	p.L719F	1.000	smart_Znf_NFX1	pfam_Znf_NFX1,smart_Znf_NFX1,pfscan_Znf_RING	-	no_errors	NFXL1	HGNC	ENSG00000170448	74	0	0.00	50	10	16.67	-	-	-
NLK	0	genome.wustl.edu	37	17	26370124	26370124	+	Silent	SNP	C	C	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	17	26370124	26370124	C	T	SNP	NLK	ENST00000407008	human	ensembl	69_37n	+1	known	silent	c.225	p.A75	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	NLK	HGNC	ENSG00000087095	54	0	0.00	29	13	30.95	-	-	-
PCNXL2	0	genome.wustl.edu	37	1	233190018	233190018	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	233190018	233190018	G	T	SNP	PCNXL2	ENST00000258229	human	ensembl	69_37n	-1	known	missense	c.4347	p.F1449L	1.000	NULL	pfam_Pecanex,superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	PCNXL2	HGNC	ENSG00000135749	36	0	0.00	29	4	12.12	-	-	-
PDE3A	0	genome.wustl.edu	37	12	20801709	20801709	+	Missense_Mutation	SNP	T	T	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	12	20801709	20801709	T	A	SNP	PDE3A	ENST00000359062	human	ensembl	69_37n	+1	known	missense	c.2653	p.F885I	1.000	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom	-	no_errors	PDE3A	HGNC	ENSG00000172572	71	0	0.00	64	52	44.83	-	-	-
PLXNB1	0	genome.wustl.edu	37	3	48459737	48459737	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	48459737	48459737	A	T	SNP	PLXNB1	ENST00000296440	human	ensembl	69_37n	-1	known	missense	c.3085	p.C1029S	1.000	superfamily_Plexin-like_fold,smart_Plexin-like	pfam_Plexin_cytoplasmic_RasGAP_dom,pfam_IPT_TIG_rcpt,pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Rho_GTPase_activation_prot,superfamily_Ig_E-set,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,smart_IPT_TIG_rcpt,pfscan_Semaphorin/CD100_Ag	-	no_errors	PLXNB1	HGNC	ENSG00000164050	22	0	0.00	0	10	100.00	-	-	-
PTPRB	0	genome.wustl.edu	37	12	70946687	70946687	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	12	70946687	70946687	C	A	SNP	PTPRB	ENST00000334414	human	ensembl	69_37n	-1	known	nonsense	c.5257	p.E1753*	1.000	superfamily_Fibronectin_type3,smart_Fibronectin_type3	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Ricin_B_lectin,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRB	HGNC	ENSG00000127329	69	0	0.00	71	27	27.55	-	-	-
RBBP4	0	genome.wustl.edu	37	1	33117549	33117549	+	Silent	SNP	C	C	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	33117549	33117549	C	T	SNP	RBBP4	ENST00000373493	human	ensembl	69_37n	+1	known	silent	c.51	p.I17	1.000	NULL	pfam_WD40_repeat,pfam_Histone-bd_RBBP4,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	RBBP4	HGNC	ENSG00000162521	57	0	0.00	94	23	19.66	-	-	-
RGPD3	0	genome.wustl.edu	37	2	107032319	107032319	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	107032319	107032319	A	T	SNP	RGPD3	ENST00000304514	human	ensembl	69_37n	-1	known	missense	c.5051	p.M1684K	1.000	NULL	pfam_Ran_bind_dom,pfam_GRIP,pfam_TPR-1,pfam_TPR_2,smart_TPR_repeat,smart_Ran_bind_dom,smart_GRIP,pfscan_GRIP,pfscan_TPR_repeat,pfscan_TPR-contain_dom,pfscan_Ran_bind_dom	-	no_errors	RGPD3	HGNC	ENSG00000153165	165	0	0.00	169	54	24.22	-	-	-
SCN1A	0	genome.wustl.edu	37	2	166909415	166909415	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	166909415	166909415	G	T	SNP	SCN1A	ENST00000303395	human	ensembl	69_37n	-1	known	missense	c.641	p.A214E	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_a1su,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN1A	HGNC	ENSG00000144285	44	0	0.00	67	17	20.24	-	-	-
SKIL	0	genome.wustl.edu	37	3	170078924	170078924	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	3	170078924	170078924	C	G	SNP	SKIL	ENST00000259119	human	ensembl	69_37n	+1	known	missense	c.805	p.L269V	0.932	pfam_c-SKI_SMAD4-bd_dom,superfamily_SAND_dom-like	pfam_c-SKI_SMAD4-bd_dom,pfam_Transform_Ski,superfamily_SAND_dom-like,superfamily_DNA-bd_dom_put	-	no_errors	SKIL	HGNC	ENSG00000136603	68	0	0.00	62	26	29.55	-	-	-
STOX1	0	genome.wustl.edu	37	10	70644582	70644582	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	10	70644582	70644582	G	C	SNP	STOX1	ENST00000298596	human	ensembl	69_37n	+1	known	missense	c.1030	p.V344L	1.000	NULL	pfam_Storkhead-box_winged-helix	-	no_errors	STOX1	HGNC	ENSG00000165730	43	0	0.00	49	13	20.97	-	-	-
TPTE	0	genome.wustl.edu	37	21	10951293	10951293	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	21	10951293	10951293	T	C	SNP	TPTE	ENST00000361285	human	ensembl	69_37n	-1	known	missense	c.419	p.D140G	0.997	pfam_Ion_trans_dom	pfam_Tensin_phosphatase_C2-dom,pfam_Dual-sp_phosphatase_cat-dom,pfam_Ion_trans_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TPTE	HGNC	ENSG00000166157	57	0	0.00	59	16	21.33	-	-	-
TTC7A	0	genome.wustl.edu	37	2	47202156	47202156	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	47202156	47202156	C	T	SNP	TTC7A	ENST00000319190	human	ensembl	69_37n	+1	known	missense	c.562	p.R188C	0.995	NULL	pfam_TPR_2,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	TTC7A	HGNC	ENSG00000068724	30	0	0.00	18	12	40.00	-	-	-
TTN	0	genome.wustl.edu	37	2	179448488	179448488	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	2	179448488	179448488	G	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.57717	p.C19239W	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	40	0	0.00	52	16	23.53	-	-	-
ZNF425	0	genome.wustl.edu	37	7	148801215	148801215	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	148801215	148801215	G	T	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.1748	p.A583E	0.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	18	0	0.00	9	10	52.63	-	-	-
ZNF425	0	genome.wustl.edu	37	7	148802311	148802311	+	Missense_Mutation	SNP	A	A	C			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	7	148802311	148802311	A	C	SNP	ZNF425	ENST00000378061	human	ensembl	69_37n	-1	known	missense	c.652	p.C218G	0.000	NULL	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Krueppel-associated_box-rel	-	no_errors	ZNF425	HGNC	ENSG00000204947	57	0	0.00	42	19	31.15	-	-	-
ZNF496	0	genome.wustl.edu	37	1	247492666	247492666	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A24Z-01A-11D-A167-09	TCGA-AR-A24Z-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	c11f2060-d3fb-4e3d-8058-b8cce44af519	e7976863-3bbf-42ac-b272-ccd7ca5bf679	1	247492666	247492666	C	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	missense	c.215	p.R72L	0.677	pfam_Tscrpt_reg_SCAN,superfamily_Retrov_capsid_C,smart_Tscrpt_reg_SCAN,pfscan_Tscrpt_reg_SCAN	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	37	0	0.00	25	11	30.56	-	-	-
