Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA1	0	genome.wustl.edu	37	9	107550711	107550711	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	9	107550711	107550711	C	G	SNP	ABCA1	ENST00000374736	human	ensembl	69_37n	-1	known	missense	c.6065	p.G2022A	1.000	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA1	HGNC	ENSG00000165029	291	0	0.00	203	109	34.94	-	-	-
CTCF	0	genome.wustl.edu	37	16	67645518	67645518	+	Splice_Site	SNP	T	T	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	67645518	67645518	T	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	splice_site	c.781+2	e1+2	1.000	-	-	-	no_errors	CTCF	HGNC	ENSG00000102974	155	0	0.00	26	60	69.77	-	-	-
CYP2D7P1	0	genome.wustl.edu	37	22	42537329	42537329	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	22	42537329	42537329	C	T	SNP	CYP2D7P1	ENST00000433992	human	ensembl	69_37n	-1	known	missense	c.1064	p.R355Q	0.981	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CYP2D7P1	HGNC	ENSG00000205702	43	0	0.00	11	4	26.67	-	-	-
FAM49B	0	genome.wustl.edu	37	8	130891697	130891697	+	Missense_Mutation	SNP	A	A	C			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	8	130891697	130891697	A	C	SNP	FAM49B	ENST00000401979	human	ensembl	69_37n	-1	known	missense	c.11	p.L4R	1.000	NULL	pfam_DUF1394	-	no_errors	FAM49B	HGNC	ENSG00000153310	229	0	0.00	127	88	40.93	-	-	-
FTMT	0	genome.wustl.edu	37	5	121187814	121187814	+	Silent	SNP	C	C	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	5	121187814	121187814	C	T	SNP	FTMT	ENST00000321339	human	ensembl	69_37n	+1	known	silent	c.156	p.A52	0.000	NULL	pfam_Ferritin_DPS_dom,superfamily_Ferritin/RR-like,pfscan_Ferritin-like_diiron	-	no_errors	FTMT	HGNC	ENSG00000181867	21	0	0.00	15	6	28.57	-	-	-
IL21	0	genome.wustl.edu	37	4	123536991	123536991	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	123536991	123536991	G	T	SNP	IL21	ENST00000264497	human	ensembl	69_37n	-1	known	missense	c.206	p.T69K	0.772	pfam_Interleukin_15-like	pfam_Interleukin_15-like	-	no_errors	IL21	HGNC	ENSG00000138684	201	0	0.00	132	64	32.65	-	-	-
LRBA	0	genome.wustl.edu	37	4	151392804	151392804	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	4	151392804	151392804	C	T	SNP	LRBA	ENST00000509835	human	ensembl	69_37n	-1	novel	missense	c.2597	p.S866N	0.992	pfam_BEACH_dom,superfamily_BEACH_dom,pfscan_BEACH_dom	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_BEACH_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	LRBA	HGNC	ENSG00000198589	190	0	0.00	177	76	30.04	-	-	-
OR56B4	0	genome.wustl.edu	37	11	6129525	6129526	+	In_Frame_Ins	INS	-	-	ACT			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	11	6129525	6129526	-	ACT	INS	OR56B4	ENST00000316529	human	ensembl	69_37n	+1	known	in_frame_ins	c.517_518	p.175in_frame_insY	0.000:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR56B4	HGNC	ENSG00000180919	341	0	0.00	289	98	25.32	-	-	-
PKN2	0	genome.wustl.edu	37	1	89299057	89299057	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	89299057	89299057	C	T	SNP	PKN2	ENST00000370521	human	ensembl	69_37n	+1	known	nonsense	c.2881	p.R961*	1.000	pfam_Pkinase_C,superfamily_Kinase-like_dom,smart_AGC-kinase_C	pfam_Prot_kinase_cat_dom,pfam_HR1_rho-bd,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_HR1_rho-bd,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_HR1_rho-bd,smart_C2_Ca-dep,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom	-	no_errors	PKN2	HGNC	ENSG00000065243	154	0	0.00	104	40	27.78	-	-	-
PRKAR1B	0	genome.wustl.edu	37	7	720280	720281	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	7	720280	720281	-	G	INS	PRKAR1B	ENST00000360274	human	ensembl	69_37n	-1	known	frame_shift_ins	c.261_260	p.N88fs	0.026:0.998	pirsf_cAMP_dep_PK_reg_su	pfam_cNMP-bd_dom,pfam_cAMP_dep_PK_reg_su_I/II_a/b,superfamily_cNMP-bd-like,superfamily_cAMP_dep_PK_reg_su_I/II_a/b,smart_cAMP_dep_PK_reg_su_I/II_a/b,smart_cNMP-bd_dom,pirsf_cAMP_dep_PK_reg_su,pfscan_cNMP-bd_dom,prints_cAMP/cGMP_kin	-	no_errors	PRKAR1B	HGNC	ENSG00000188191	32	0	0.00	32	6	15.79	-	-	-
RHBDF2	0	genome.wustl.edu	37	17	74473336	74473337	+	Frame_Shift_Ins	INS	-	-	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	17	74473336	74473337	-	G	INS	RHBDF2	ENST00000313080	human	ensembl	69_37n	-1	known	frame_shift_ins	c.933_932	p.L312fs	0.581:1.000	pfam_Rhomboid_SP	pfam_Rhomboid_SP,pfam_Peptidase_S54_rhomboid_dom	-	no_errors	RHBDF2	HGNC	ENSG00000129667	20	0	0.00	14	4	22.22	-	-	-
SLC26A4	0	genome.wustl.edu	37	7	107342369	107342370	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	7	107342369	107342370	-	A	INS	SLC26A4	ENST00000265715	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1901_1902	p.E635fs	1.000:0.980	pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	pfam_Sulph_transpt,pfam_STAS_dom,superfamily_STAS_dom,pfscan_STAS_dom,tigrfam_SulP_transpt	-	no_errors	SLC26A4	HGNC	ENSG00000091137	125	0	0.00	102	51	33.33	-	-	-
SPEN	0	genome.wustl.edu	37	1	16263797	16263797	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	16263797	16263797	C	G	SNP	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	missense	c.10166	p.S3389C	1.000	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	55	0	0.00	38	6	13.64	-	-	-
SPG20	0	genome.wustl.edu	37	13	36886475	36886475	+	Silent	SNP	T	T	G			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	13	36886475	36886475	T	G	SNP	SPG20	ENST00000355182	human	ensembl	69_37n	-1	known	silent	c.1623	p.V541	0.998	pfam_Senescence/spartin	pfam_Senescence/spartin,pfam_MIT,smart_MIT	-	no_errors	SPG20	HGNC	ENSG00000133104	485	0	0.00	326	153	31.87	-	-	-
TBX3	0	genome.wustl.edu	37	12	115117430	115117431	+	Frame_Shift_Ins	INS	-	-	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	115117430	115117431	-	T	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.744_743	p.Y248fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	293	0	0.00	106	55	34.16	-	-	-
UTP20	0	genome.wustl.edu	37	12	101723202	101723202	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	12	101723202	101723202	C	T	SNP	UTP20	ENST00000261637	human	ensembl	69_37n	+1	known	missense	c.3392	p.S1131L	1.000	superfamily_ARM-type_fold	pfam_DRIM,superfamily_ARM-type_fold	-	no_errors	UTP20	HGNC	ENSG00000120800	138	0	0.00	72	42	36.84	-	-	-
WNT2B	0	genome.wustl.edu	37	1	113057615	113057615	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	1	113057615	113057615	G	A	SNP	WNT2B	ENST00000369684	human	ensembl	69_37n	+1	known	missense	c.302	p.R101Q	1.000	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2B	HGNC	ENSG00000134245	52	0	0.00	22	33	60.00	-	-	-
ZC3H18	0	genome.wustl.edu	37	16	88690436	88690436	+	Frame_Shift_Del	DEL	A	A	-			TCGA-B6-A0RI-01A-11W-A071-09	TCGA-B6-A0RI-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50d83050-b98c-4a1a-a673-91dbc67c37c6	71508273-8303-4261-bcf2-b5ace767bfe2	16	88690436	88690436	A	-	DEL	ZC3H18	ENST00000301011	human	ensembl	69_37n	+1	known	frame_shift_del	c.1864	p.K622fs	1.000	NULL	smart_Znf_CCCH	-	no_errors	ZC3H18	HGNC	ENSG00000158545	55	0	0.00	11	2	15.38	-	-	-
