Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AASDH	0	genome.wustl.edu	37	4	57216157	57216157	+	Frame_Shift_Del	DEL	C	C	-			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	57216157	57216157	C	-	DEL	AASDH	ENST00000205214	human	ensembl	69_37n	-1	known	frame_shift_del	c.1760	p.G587fs	1.000	pfam_Acyl_carrier_prot-like,superfamily_Acyl_carrier_prot-like,pfscan_Acyl_carrier_prot-like	pfam_AMP-dep_Synth/Lig,pfam_Acyl_carrier_prot-like,superfamily_Quinonprotein_ADH-like,superfamily_Acyl_carrier_prot-like,smart_PQQ_beta_propeller_repeat,pfscan_Acyl_carrier_prot-like	-	no_errors	AASDH	HGNC	ENSG00000157426	35	0	0.00	10	2	16.67	-	-	-
ABCA13	0	genome.wustl.edu	37	7	48494768	48494768	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	7	48494768	48494768	G	T	SNP	ABCA13	ENST00000435803	human	ensembl	69_37n	+1	known	missense	c.12700	p.V4234F	0.708	NULL	pfam_ABC_transporter-like,smart_AAA+_ATPase,pfscan_ABC_transporter-like	-	no_errors	ABCA13	HGNC	ENSG00000179869	10	0	0.00	10	11	52.38	-	-	-
ANKRD30BP2	0	genome.wustl.edu	37	21	14424153	14424153	+	RNA	SNP	C	C	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	21	14424153	14424153	C	A	SNP	ANKRD30BP2	ENST00000471407	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.013	-	-	-	no_errors	ANKRD30BP2	HGNC	ENSG00000224309	8	0	0.00	11	5	31.25	-	-	-
ARHGEF1	0	genome.wustl.edu	37	19	42410160	42410160	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	19	42410160	42410160	C	T	SNP	ARHGEF1	ENST00000378152	human	ensembl	69_37n	+1	known	missense	c.2420	p.A807V	0.992	NULL	pfam_Regulat_G_prot_signal-like,pfam_DH-domain,superfamily_DH-domain,superfamily_Regulat_G_prot_signal_superfam,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	ARHGEF1	HGNC	ENSG00000076928	44	0	0.00	39	18	31.58	-	-	-
C9orf43	0	genome.wustl.edu	37	9	116187645	116187646	+	In_Frame_Ins	INS	-	-	GCA			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	9	116187645	116187646	-	GCA	INS	C9orf43	ENST00000288462	human	ensembl	69_37n	+1	known	in_frame_ins	c.887_888	p.300in_frame_insQ	0.000:0.211	NULL	NULL	-	no_errors	C9orf43	HGNC	ENSG00000157653	109	1	0.91	135	35	20.59	-	-	-
CACNA1D	0	genome.wustl.edu	37	3	53765129	53765131	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	53765129	53765131	AAC	-	DEL	CACNA1D	ENST00000288139	human	ensembl	69_37n	+1	known	in_frame_del	c.2422_2424	p.N809in_frame_del	1.000:1.000:1.000	prints_LVDCC_a1dsu	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_LVDCC_a1dsu	-	no_errors	CACNA1D	HGNC	ENSG00000157388	149	0	0.00	67	18	21.18	-	-	-
CACNA2D2	0	genome.wustl.edu	37	3	50413608	50413608	+	Silent	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	50413608	50413608	G	A	SNP	CACNA2D2	ENST00000435965	human	ensembl	69_37n	-1	known	silent	c.1638	p.N546	1.000	pfam_Cache_domain	pfam_VWA_N,pfam_VDCC_a2/dsu,pfam_Cache_domain,pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	-	no_errors	CACNA2D2	HGNC	ENSG00000007402	78	0	0.00	81	33	28.95	-	-	-
CEP290	0	genome.wustl.edu	37	12	88474172	88474172	+	Silent	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	12	88474172	88474172	C	T	SNP	CEP290	ENST00000309041	human	ensembl	69_37n	-1	known	silent	c.5019	p.Q1673	1.000	NULL	NULL	-	no_errors	CEP290	HGNC	ENSG00000198707	196	0	0.00	99	35	26.12	-	-	-
CSMD3	0	genome.wustl.edu	37	8	113841931	113841931	+	Silent	SNP	T	T	G			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	8	113841931	113841931	T	G	SNP	CSMD3	ENST00000297405	human	ensembl	69_37n	-1	known	silent	c.1843	p.R615	0.991	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD3	HGNC	ENSG00000164796	151	0	0.00	164	99	37.64	-	-	-
DNAH12	0	genome.wustl.edu	37	3	57509313	57509313	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	57509313	57509313	T	-	DEL	DNAH12	ENST00000351747	human	ensembl	69_37n	-1	known	frame_shift_del	c.276	p.G93fs	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH12	HGNC	ENSG00000174844	67	0	0.00	16	3	15.79	-	-	-
FBXO18	0	genome.wustl.edu	37	10	5937117	5937117	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	10	5937117	5937117	G	T	SNP	FBXO18	ENST00000379999	human	ensembl	69_37n	+1	known	missense	c.121	p.A41S	0.000	NULL	pfam_UvrD-like_ATP-bd,pfam_F-box_dom_cyclin-like,superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO18	HGNC	ENSG00000134452	27	0	0.00	37	9	19.57	-	-	-
IGHM	0	genome.wustl.edu	37	14	106321751	106321751	+	Silent	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	14	106321751	106321751	C	T	SNP	IGHM	ENST00000390559	human	ensembl	69_37n	-1	known	silent	c.483	p.T161	0.000	pfam_Ig_C1-set,pfam_CD80_C2-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_Ig_C1-set,pfam_CD80_C2-set,pfam_Immunoglobulin,smart_Ig_C1-set,pfscan_Ig-like	-	no_start_codon	IGHM	HGNC	ENSG00000211899	58	0	0.00	118	42	26.25	-	-	-
KCNQ2	0	genome.wustl.edu	37	20	62038263	62038263	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	62038263	62038263	C	T	SNP	KCNQ2	ENST00000354587	human	ensembl	69_37n	-1	known	missense	c.2377	p.D793N	1.000	pfam_Ankyrin-G_BS	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ankyrin-G_BS,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ2	HGNC	ENSG00000075043	12	0	0.00	15	8	34.78	-	-	-
MLLT4	0	genome.wustl.edu	37	6	168312077	168312077	+	Nonsense_Mutation	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	6	168312077	168312077	C	T	SNP	MLLT4	ENST00000366806	human	ensembl	69_37n	+1	known	nonsense	c.1945	p.Q649*	1.000	NULL	pfam_Ras-assoc,pfam_Dil_domain,pfam_PDZ,pfam_FHA_dom,superfamily_PDZ,superfamily_SMAD_FHA_domain,smart_Ras-assoc,smart_FHA_dom,smart_PDZ,pfscan_Dilute,pfscan_PDZ,pfscan_Ras-assoc	-	no_errors	MLLT4	HGNC	ENSG00000130396	158	0	0.00	250	44	14.97	-	-	-
NBPF1	0	genome.wustl.edu	37	1	16891365	16891365	+	RNA	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	16891365	16891365	G	A	SNP	NBPF1	ENST00000401007	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	15	0	0.00	25	7	21.88	-	-	-
NTSR1	0	genome.wustl.edu	37	20	61340826	61340826	+	Silent	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	20	61340826	61340826	G	A	SNP	NTSR1	ENST00000370501	human	ensembl	69_37n	+1	known	silent	c.267	p.A89	0.987	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_NT1_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfscan_GPCR_Rhodpsn_supfam,prints_NT1_rcpt,prints_7TM_GPCR_Rhodpsn,prints_NT_rcpt,prints_P2_purnocptor	-	no_errors	NTSR1	HGNC	ENSG00000101188	32	0	0.00	56	23	29.11	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	91	0	0.00	103	47	31.13	-	-	-
SH2D2A	0	genome.wustl.edu	37	1	156784870	156784870	+	Silent	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	156784870	156784870	G	A	SNP	SH2D2A	ENST00000392306	human	ensembl	69_37n	-1	known	silent	c.267	p.H89	0.417	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D2A	HGNC	ENSG00000027869	57	0	0.00	58	17	22.67	-	-	-
TLR10	0	genome.wustl.edu	37	4	38777170	38777172	+	In_Frame_Del	DEL	AAC	AAC	-			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	AAC	AAC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	4	38777170	38777172	AAC	-	DEL	TLR10	ENST00000308973	human	ensembl	69_37n	-1	known	in_frame_del	c.42_40	p.V14in_frame_del	0.000:0.000:0.000	pirsf_Toll-like_receptor	pirsf_Toll-like_receptor,pfam_TIR_dom,pfam_Leu-rich_rpt,superfamily_TIR_dom,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_TIR_dom,pfscan_TIR_dom	-	no_errors	TLR10	HGNC	ENSG00000174123	110	0	0.00	89	20	18.35	-	-	-
USH2A	0	genome.wustl.edu	37	1	215820992	215820992	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	1	215820992	215820992	G	A	SNP	USH2A	ENST00000366943	human	ensembl	69_37n	-1	known	missense	c.14663	p.T4888M	0.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Fibronectin_type3,pfam_EGF_laminin,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_LamG-like,smart_Laminin_N,smart_EGF_laminin,smart_Fibronectin_type3,smart_Laminin_G,pfscan_EGF_laminin,pfscan_Fibronectin_type3,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	USH2A	HGNC	ENSG00000042781	86	0	0.00	119	34	22.22	-	-	-
USP9X	0	genome.wustl.edu	37	X	41025364	41025364	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	X	41025364	41025364	G	A	SNP	USP9X	ENST00000324545	human	ensembl	69_37n	+1	known	missense	c.2225	p.R742Q	1.000	superfamily_ARM-type_fold	pfam_Peptidase_C19,superfamily_ARM-type_fold,pfscan_Peptidase_C19	-	no_errors	USP9X	HGNC	ENSG00000124486	187	0	0.00	106	39	26.71	-	-	-
WFIKKN1	0	genome.wustl.edu	37	16	683760	683760	+	Silent	SNP	C	C	T			TCGA-B6-A0X7-01A-11D-A10M-09	TCGA-B6-A0X7-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	be5f93af-844a-4adb-ad89-05bfeefa58cd	f50ae895-84cf-4ce7-9663-167b5b951516	16	683760	683760	C	T	SNP	WFIKKN1	ENST00000319070	human	ensembl	69_37n	+1	known	silent	c.1350	p.A450	0.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,pfscan_Netrin_domain	pfam_Prot_inh_Kunz-m,pfam_Ig_I-set,pfam_Ig_V-set,pfam_Whey_acidic_protein_4-diS_core,pfam_Kazal-type_dom,pfam_Immunoglobulin,pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,superfamily_Prot_inh_Kunz-m,superfamily_Whey_acidic_protein_4-diS_core,smart_Whey_acidic_protein_4-diS_core,smart_Ig_sub,smart_Ig_sub2,smart_Prot_inh_Kunz-m,pfscan_Netrin_domain,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like,prints_Prot_inh_Kunz-m	-	no_errors	WFIKKN1	HGNC	ENSG00000127578	15	0	0.00	21	13	38.24	-	-	-
