Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB7	0	genome.wustl.edu	37	X	74318816	74318816	+	Silent	SNP	A	A	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	X	74318816	74318816	A	G	SNP	ABCB7	ENST00000253577	human	ensembl	69_37n	-1	known	silent	c.417	p.A139	0.888	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB7	HGNC	ENSG00000131269	59	0	0.00	43	8	15.69	-	-	-
ABCC9	0	genome.wustl.edu	37	12	21970180	21970180	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	21970180	21970180	G	A	SNP	ABCC9	ENST00000261200	human	ensembl	69_37n	-1	known	missense	c.3833	p.A1278V	1.000	superfamily_ABC_transptrTM_dom_typ1	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,prints_Sulphorea_rcpt,prints_Sulphonylurea_rcpt-2,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCC9	HGNC	ENSG00000069431	45	0	0.00	31	6	16.22	-	-	-
ACTL9	0	genome.wustl.edu	37	19	8808020	8808020	+	Silent	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	19	8808020	8808020	G	A	SNP	ACTL9	ENST00000324436	human	ensembl	69_37n	-1	known	silent	c.1032	p.S344	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,smart_Actin-like,prints_Actin-like	-	no_errors	ACTL9	HGNC	ENSG00000181786	45	0	0.00	36	4	10.00	-	-	-
AHCTF1	0	genome.wustl.edu	37	1	247076643	247076643	+	Silent	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	247076643	247076643	C	T	SNP	AHCTF1	ENST00000326225	human	ensembl	69_37n	-1	known	silent	c.474	p.L158	0.937	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like	-	no_errors	AHCTF1	HGNC	ENSG00000153207	63	0	0.00	44	7	13.73	-	-	-
AHCYL1	0	genome.wustl.edu	37	1	110561019	110561019	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	110561019	110561019	A	T	SNP	AHCYL1	ENST00000369799	human	ensembl	69_37n	+1	known	missense	c.1148	p.E383V	1.000	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	pfam_Adenosylhomocysteinase,pfam_Ado_hCys_hydrolase_NAD-bd,pfam_D-isomer_2_OHA_DH_NAD-bd,pfam_IlvN,pirsf_Adenosylhomocysteinase,tigrfam_Adenosylhomocysteinase	-	no_errors	AHCYL1	HGNC	ENSG00000168710	73	0	0.00	36	8	18.18	-	-	-
ALDH4A1	0	genome.wustl.edu	37	1	19201887	19201887	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	19201887	19201887	G	T	SNP	ALDH4A1	ENST00000290597	human	ensembl	69_37n	-1	known	missense	c.1449	p.F483L	0.999	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Delta1-pyrroline-5-COlate_DH-1	-	no_errors	ALDH4A1	HGNC	ENSG00000159423	66	0	0.00	61	10	14.08	-	-	-
API5	0	genome.wustl.edu	37	11	43349344	43349344	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	43349344	43349344	G	C	SNP	API5	ENST00000531273	human	ensembl	69_37n	+1	known	missense	c.861	p.L287F	1.000	pfam_API5,superfamily_ARM-type_fold	pfam_API5,superfamily_ARM-type_fold	-	no_errors	API5	HGNC	ENSG00000166181	65	0	0.00	59	14	19.18	-	-	-
ATP1A2	0	genome.wustl.edu	37	1	160106729	160106729	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	160106729	160106729	C	T	SNP	ATP1A2	ENST00000447527	human	ensembl	69_37n	+1	known	missense	c.1829	p.T610I	1.000	pfam_ATPase_P-typ_cation-transptr_C,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_cation-ex_asu_euk	pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_ATPase-assoc-dom,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_cation-exchng_asu,prints_ATPase_P-typ_ion-transptr,tigrfam_ATPase_P-typ_cation-ex_asu_euk,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP1A2	HGNC	ENSG00000018625	48	0	0.00	26	10	27.78	-	-	-
CARD6	0	genome.wustl.edu	37	5	40852755	40852756	+	Frame_Shift_Ins	INS	-	-	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	40852755	40852756	-	A	INS	CARD6	ENST00000254691	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1321_1322	p.D442fs	0.000:0.000	NULL	pfam_CARD,superfamily_DEATH-like,smart_CARD,pfscan_CARD	-	no_errors	CARD6	HGNC	ENSG00000132357	34	0	0.00	39	8	17.02	-	-	-
CATSPER4	0	genome.wustl.edu	37	1	26517279	26517279	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	26517279	26517279	G	T	SNP	CATSPER4	ENST00000456354	human	ensembl	69_37n	+1	known	missense	c.161	p.G54V	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel	-	no_errors	CATSPER4	HGNC	ENSG00000188782	35	0	0.00	33	4	10.81	-	-	-
CCDC171	0	genome.wustl.edu	37	9	15874580	15874580	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	9	15874580	15874580	C	T	SNP	CCDC171	ENST00000449575	human	ensembl	69_37n	+1	known	missense	c.1238	p.S413L	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CCDC171	HGNC	ENSG00000164989	42	0	0.00	40	5	11.11	-	-	-
CD200	0	genome.wustl.edu	37	3	112052068	112052068	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	3	112052068	112052068	G	T	SNP	CD200	ENST00000473539	human	ensembl	69_37n	+1	known	missense	c.9	p.R3S	0.003	NULL	pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	CD200	HGNC	ENSG00000091972	8	0	0.00	10	4	28.57	-	-	-
CEP95	0	genome.wustl.edu	37	17	62530781	62530781	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	62530781	62530781	G	A	SNP	CEP95	ENST00000556440	human	ensembl	69_37n	+1	known	missense	c.1996	p.A666T	1.000	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890	54	0	0.00	40	5	11.11	-	-	-
CYLC2	0	genome.wustl.edu	37	9	105767034	105767034	+	Missense_Mutation	SNP	T	T	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	9	105767034	105767034	T	A	SNP	CYLC2	ENST00000374798	human	ensembl	69_37n	+1	putative	missense	c.238	p.S80T	1.000	NULL	NULL	-	no_errors	CYLC2	HGNC	ENSG00000155833	65	0	0.00	35	5	12.50	-	-	-
E2F4	0	genome.wustl.edu	37	16	67226205	67226205	+	Silent	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	16	67226205	67226205	C	T	SNP	E2F4	ENST00000379378	human	ensembl	69_37n	+1	known	silent	c.75	p.L25	1.000	pfam_E2F_TDP	pfam_E2F_TDP	-	no_errors	E2F4	HGNC	ENSG00000205250	32	0	0.00	32	5	13.51	-	-	-
EEA1	0	genome.wustl.edu	37	12	93244971	93244971	+	Silent	SNP	A	A	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	93244971	93244971	A	G	SNP	EEA1	ENST00000322349	human	ensembl	69_37n	-1	known	silent	c.714	p.D238	1.000	NULL	pfam_Znf_FYVE,superfamily_Znf_FYVE_PHD,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_Znf_C2H2	-	no_errors	EEA1	HGNC	ENSG00000102189	105	0	0.00	97	11	10.19	-	-	-
FAM138B	0	genome.wustl.edu	37	2	114336058	114336058	+	RNA	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	114336058	114336058	C	T	SNP	FAM138B	ENST00000446648	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.022	-	-	-	no_errors	FAM138B	HGNC	ENSG00000226516	17	0	0.00	9	2	18.18	-	-	-
FLJ42102	0	genome.wustl.edu	37	11	71117644	71117644	+	RNA	SNP	A	A	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	71117644	71117644	A	G	SNP	FLJ42102	ENST00000331301	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.003	-	-	-	no_errors	AP002387.1	Clone_based_vega_gene	ENSG00000172900	34	0	0.00	30	4	11.76	-	-	-
GGNBP2	0	genome.wustl.edu	37	17	34942557	34942557	+	Nonsense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	34942557	34942557	G	T	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	+1	known	nonsense	c.1570	p.E524*	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	37	0	0.00	18	3	14.29	-	-	-
GPKOW	0	genome.wustl.edu	37	X	48980041	48980041	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	X	48980041	48980041	A	T	SNP	GPKOW	ENST00000156109	human	ensembl	69_37n	-1	known	missense	c.32	p.L11Q	0.044	NULL	pfam_KOW,pfam_G_patch_dom,superfamily_Translation_prot_SH3-like,smart_G_patch_dom,smart_KOW,pfscan_G_patch_dom	-	no_errors	GPKOW	HGNC	ENSG00000068394	88	0	0.00	69	14	16.87	-	-	-
GYS1	0	genome.wustl.edu	37	19	49490506	49490506	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	19	49490506	49490506	C	T	SNP	GYS1	ENST00000323798	human	ensembl	69_37n	-1	known	missense	c.437	p.R146H	0.997	pfam_Glycogen_synth	pfam_Glycogen_synth,pfam_Glyco_trans_1,pfam_Starch_synth_cat_dom	-	no_errors	GYS1	HGNC	ENSG00000104812	79	0	0.00	67	10	12.99	-	-	-
HLA-DMA	0	genome.wustl.edu	37	6	32917497	32917497	+	Silent	SNP	T	T	C			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	32917497	32917497	T	C	SNP	HLA-DMA	ENST00000374843	human	ensembl	69_37n	-1	known	silent	c.543	p.G181	0.999	pfam_Ig_C1-set,smart_Ig_C1-set,pfscan_Ig-like	pfam_MHC_II_a_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_a_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DMA	HGNC	ENSG00000204257	37	0	0.00	31	5	13.89	-	-	-
HOXA-AS3	0	genome.wustl.edu	37	7	27191035	27191035	+	RNA	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	27191035	27191035	G	T	SNP	HOXA-AS3	ENST00000524304	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	HOXA-AS3	HGNC	ENSG00000254369	8	0	0.00	5	5	50.00	-	-	-
HOXA10	0	genome.wustl.edu	37	7	27213491	27213491	+	Silent	SNP	C	C	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	27213491	27213491	C	A	SNP	HOXA10	ENST00000283921	human	ensembl	69_37n	-1	known	silent	c.435	p.P145	1.000	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_Homeobox_metazoa	-	no_errors	HOXA10	HGNC	ENSG00000253293	12	0	0.00	10	7	41.18	-	-	-
LRRC10	0	genome.wustl.edu	37	12	70004049	70004049	+	Silent	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	70004049	70004049	G	T	SNP	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	silent	c.570	p.P190	0.131	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	28	0	0.00	24	4	14.29	-	-	-
LRRC37A3	0	genome.wustl.edu	37	17	62892271	62892271	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	62892271	62892271	A	T	SNP	LRRC37A3	ENST00000319651	human	ensembl	69_37n	-1	known	missense	c.1105	p.S369T	0.000	NULL	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC37A3	HGNC	ENSG00000176809	69	0	0.00	39	5	11.36	-	-	-
LRRC37BP1	0	genome.wustl.edu	37	17	28964071	28964071	+	RNA	SNP	G	G	C			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	28964071	28964071	G	C	SNP	LRRC37BP1	ENST00000417404	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LRRC37BP1	HGNC	ENSG00000214719	11	0	0.00	13	6	31.58	-	-	-
MCAM	0	genome.wustl.edu	37	11	119182273	119182273	+	Silent	SNP	G	G	C			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	119182273	119182273	G	C	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	silent	c.1374	p.P458	0.076	smart_Ig_sub,pfscan_Ig-like	pfam_Immunoglobulin,pfam_CD80_C2-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MCAM	HGNC	ENSG00000076706	29	0	0.00	15	8	34.78	-	-	-
MIR1307	0	genome.wustl.edu	37	10	105154106	105154106	+	RNA	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	10	105154106	105154106	G	A	SNP	MIR1307	ENST00000408840	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.975	-	-	-	no_errors	MIR1307	HGNC	ENSG00000221767	56	0	0.00	42	10	19.23	-	-	-
MYO10	0	genome.wustl.edu	37	5	16764477	16764477	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	16764477	16764477	A	G	SNP	MYO10	ENST00000513610	human	ensembl	69_37n	-1	known	missense	c.1208	p.M403T	1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_Pleckstrin_homology,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,pfam_Ras-assoc,superfamily_FERM_central,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_Pleckstrin_homology,smart_MyTH4_dom,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,pfscan_Pleckstrin_homology,prints_Myosin_head_motor_dom	-	no_errors	MYO10	HGNC	ENSG00000145555	53	0	0.00	54	9	14.29	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120458941	120458942	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	120458941	120458942	AG	-	DEL	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	frame_shift_del	c.6404_6403	p.L2135fs	0.769:0.670	pirsf_Notch	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	42	0	0.00	24	7	21.21	-	-	-
OTOG	0	genome.wustl.edu	37	11	17580085	17580085	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	11	17580085	17580085	G	T	SNP	OTOG	ENST00000399391	human	ensembl	69_37n	+1	known	missense	c.1033	p.G345C	1.000	smart_Unchr_dom_Cys-rich	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_AbfB,pfam_TIL_dom,superfamily_AbfB,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_EG-like_dom	-	no_errors	OTOG	HGNC	ENSG00000188162	38	0	0.00	32	5	13.51	-	-	-
OTOP2	0	genome.wustl.edu	37	17	72923826	72923826	+	Silent	SNP	T	T	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	72923826	72923826	T	G	SNP	OTOP2	ENST00000331427	human	ensembl	69_37n	+1	known	silent	c.576	p.S192	0.004	pfam_Otopetrin	pfam_Otopetrin	-	no_errors	OTOP2	HGNC	ENSG00000183034	93	0	0.00	64	18	21.95	-	-	-
PASK	0	genome.wustl.edu	37	2	242080104	242080104	+	Silent	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	242080104	242080104	C	T	SNP	PASK	ENST00000358649	human	ensembl	69_37n	-1	known	silent	c.261	p.L87	0.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PAS_fold,superfamily_Kinase-like_dom,smart_PAS,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_PAS,pfscan_Prot_kinase_cat_dom,tigrfam_PAS	-	no_errors	PASK	HGNC	ENSG00000115687	38	0	0.00	29	5	14.71	-	-	-
PER1	0	genome.wustl.edu	37	17	8053091	8053091	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	8053091	8053091	C	A	SNP	PER1	ENST00000317276	human	ensembl	69_37n	-1	known	missense	c.633	p.E211D	1.000	smart_PAS	pfam_Period_circadian-like_C,pfam_PAS_fold_3,smart_PAS,pfscan_PAS	-	no_errors	PER1	HGNC	ENSG00000179094	42	0	0.00	34	7	17.07	-	-	-
PIGM	0	genome.wustl.edu	37	1	160001318	160001318	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	160001318	160001318	C	G	SNP	PIGM	ENST00000368090	human	ensembl	69_37n	-1	known	missense	c.212	p.R71T	0.935	NULL	pfam_Mannosyltransferase_DXD	-	no_errors	PIGM	HGNC	ENSG00000143315	30	0	0.00	39	5	11.36	-	-	-
PIGT	0	genome.wustl.edu	37	20	44044826	44044826	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	20	44044826	44044826	C	T	SNP	PIGT	ENST00000432270	human	ensembl	69_37n	+1	putative	missense	c.4	p.R2C	0.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	PIGT	HGNC	ENSG00000124155	34	0	0.00	39	6	13.33	-	-	-
PLAGL1	0	genome.wustl.edu	37	6	144262571	144262571	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	144262571	144262571	G	T	SNP	PLAGL1	ENST00000354765	human	ensembl	69_37n	-1	known	missense	c.1382	p.A461E	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	PLAGL1	HGNC	ENSG00000118495	27	0	0.00	11	4	26.67	-	-	-
PLEKHA8P1	0	genome.wustl.edu	37	12	45568343	45568343	+	RNA	SNP	C	C	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	12	45568343	45568343	C	G	SNP	PLEKHA8P1	ENST00000256692	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PLEKHA8P1	HGNC	ENSG00000134297	58	0	0.00	41	6	12.77	-	-	-
PRICKLE2-AS3	0	genome.wustl.edu	37	3	64184686	64184686	+	RNA	DEL	T	T	-			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	3	64184686	64184686	T	-	DEL	PRICKLE2-AS3	ENST00000473434	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.222	-	-	-	no_errors	PRICKLE2-AS3	HGNC	ENSG00000226017	14	0	0.00	7	3	27.27	-	-	-
PTCD3	0	genome.wustl.edu	37	2	86364662	86364662	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	86364662	86364662	G	A	SNP	PTCD3	ENST00000254630	human	ensembl	69_37n	+1	known	missense	c.2050	p.D684N	0.998	NULL	NULL	-	no_errors	PTCD3	HGNC	ENSG00000132300	72	0	0.00	46	7	13.21	-	-	-
PTPRU	0	genome.wustl.edu	37	1	29630448	29630448	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	29630448	29630448	C	T	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	+1	known	missense	c.2588	p.S863F	1.000	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	34	0	0.00	32	4	11.11	-	-	-
R3HCC1L	0	genome.wustl.edu	37	10	99968730	99968730	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	10	99968730	99968730	G	A	SNP	R3HCC1L	ENST00000298999	human	ensembl	69_37n	+1	known	missense	c.859	p.E287K	0.080	NULL	NULL	-	no_errors	R3HCC1L	HGNC	ENSG00000166024	23	0	0.00	39	6	13.33	-	-	-
RCOR3	0	genome.wustl.edu	37	1	211452614	211452614	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	211452614	211452614	G	A	SNP	RCOR3	ENST00000534460	human	ensembl	69_37n	+1	novel	nonsense	c.35	p.W12*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RCOR3	HGNC	ENSG00000117625	38	0	0.00	24	4	14.29	-	-	-
SAMD9	0	genome.wustl.edu	37	7	92732838	92732838	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	92732838	92732838	G	T	SNP	SAMD9	ENST00000379958	human	ensembl	69_37n	-1	known	missense	c.2573	p.S858Y	0.994	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD9	HGNC	ENSG00000205413	40	0	0.00	17	3	15.00	-	-	-
SETDB1	0	genome.wustl.edu	37	1	150913841	150913841	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	1	150913841	150913841	C	G	SNP	SETDB1	ENST00000271640	human	ensembl	69_37n	+1	known	missense	c.484	p.Q162E	1.000	NULL	pfam_SET_dom,pfam_Pre-SET_dom,pfam_Methyl_CpG_DNA-bd,superfamily_DNA-bd_integrase-typ,smart_Tudor,smart_Methyl_CpG_DNA-bd,smart_Pre-SET_Zn-bd_sub,smart_SET_dom,pfscan_Methyl_CpG_DNA-bd,pfscan_SET_dom,pfscan_Pre-SET_dom,pfscan_Post-SET_dom	-	no_errors	SETDB1	HGNC	ENSG00000143379	83	0	0.00	68	11	13.92	-	-	-
SFRP2	0	genome.wustl.edu	37	4	154702642	154702642	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	4	154702642	154702642	G	C	SNP	SFRP2	ENST00000274063	human	ensembl	69_37n	-1	known	missense	c.849	p.F283L	1.000	pfam_Netrin_module_non-TIMP,superfamily_TIMP-like_OB-fold,smart_Netrin_module_non-TIMP,pfscan_Netrin_domain	pfam_Frizzled_dom,pfam_Netrin_module_non-TIMP,superfamily_Frizzled_dom,superfamily_TIMP-like_OB-fold,smart_Frizzled_dom,smart_Netrin_module_non-TIMP,pfscan_Frizzled_dom,pfscan_Netrin_domain	-	no_errors	SFRP2	HGNC	ENSG00000145423	73	0	0.00	48	14	22.58	-	-	-
SKIV2L	0	genome.wustl.edu	37	6	31927109	31927109	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	6	31927109	31927109	C	T	SNP	SKIV2L	ENST00000375394	human	ensembl	69_37n	+1	known	missense	c.58	p.R20W	1.000	pirsf_RNA_helicase_ATP-dep_SK12/DOB1	pfam_DSH_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pirsf_RNA_helicase_ATP-dep_SK12/DOB1,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SKIV2L	HGNC	ENSG00000204351	29	0	0.00	26	6	18.75	-	-	-
SNX17	0	genome.wustl.edu	37	2	27598552	27598552	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	2	27598552	27598552	G	A	SNP	SNX17	ENST00000233575	human	ensembl	69_37n	+1	known	missense	c.954	p.M318I	1.000	NULL	pfam_Phox,superfamily_Phox,superfamily_FERM_central,smart_Phox,pfscan_Phox,pfscan_Ras-assoc	-	no_errors	SNX17	HGNC	ENSG00000115234	28	0	0.00	37	16	30.19	-	-	-
SPAG5	0	genome.wustl.edu	37	17	26905539	26905539	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	26905539	26905539	C	T	SNP	SPAG5	ENST00000321765	human	ensembl	69_37n	-1	known	missense	c.3206	p.R1069K	0.731	NULL	NULL	-	no_errors	SPAG5	HGNC	ENSG00000076382	40	0	0.00	31	4	11.43	-	-	-
SYN2	0	genome.wustl.edu	37	3	12226673	12226673	+	RNA	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	3	12226673	12226673	G	T	SNP	SYN2	ENST00000425297	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.009	-	-	-	no_errors	SYN2	HGNC	ENSG00000157152	23	0	0.00	16	3	15.79	-	-	-
TAF1L	0	genome.wustl.edu	37	9	32634453	32634453	+	Silent	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	9	32634453	32634453	G	A	SNP	TAF1L	ENST00000242310	human	ensembl	69_37n	-1	known	silent	c.1125	p.S375	0.998	pirsf_TAF1_animal	pirsf_TAF1_animal,pfam_TFIID_sub1_DUF3591,pfam_Bromodomain,pfam_TAF_II_230-bd,superfamily_Bromodomain,superfamily_TAF_II_230-bd,smart_Bromodomain,prints_Bromodomain,pfscan_Bromodomain	-	no_errors	TAF1L	HGNC	ENSG00000122728	148	0	0.00	105	18	14.63	-	-	-
TBC1D3	0	genome.wustl.edu	37	17	36339584	36339584	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	36339584	36339584	G	T	SNP	TBC1D3	ENST00000354664	human	ensembl	69_37n	-1	known	missense	c.1073	p.P358Q	1.000	NULL	pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Rab-GTPase-TBC_dom,pfscan_Rab-GTPase-TBC_dom	-	no_errors	TBC1D3	HGNC	ENSG00000197681	14	0	0.00	6	5	45.45	-	-	-
TP53	0	genome.wustl.edu	37	17	7578203	7578203	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	17	7578203	7578203	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	56	0	0.00	37	7	15.91	-	-	-
WNT8A	0	genome.wustl.edu	37	5	137426285	137426285	+	Silent	SNP	A	A	G			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	5	137426285	137426285	A	G	SNP	WNT8A	ENST00000361560	human	ensembl	69_37n	+1	known	silent	c.579	p.T193	0.214	pfam_Wnt,smart_Wnt,prints_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt8	-	no_errors	WNT8A	HGNC	ENSG00000061492	46	0	0.00	33	4	10.81	-	-	-
ZNF280D	0	genome.wustl.edu	37	15	56959000	56959000	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	15	56959000	56959000	G	A	SNP	ZNF280D	ENST00000267807	human	ensembl	69_37n	-1	known	missense	c.1730	p.T577I	0.996	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF280D	HGNC	ENSG00000137871	95	0	0.00	52	7	11.86	-	-	-
ZNF680	0	genome.wustl.edu	37	7	64004794	64004794	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A3ZX-01A-11D-A23C-09	TCGA-B6-A3ZX-10A-01D-A23C-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2344f424-f45c-4fa2-b3e0-b67506d40763	37c1e045-e8d8-4ea4-97f7-d2fe776064a4	7	64004794	64004794	C	A	SNP	ZNF680	ENST00000309683	human	ensembl	69_37n	-1	known	missense	c.47	p.R16M	0.141	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF680	HGNC	ENSG00000173041	34	0	0.00	27	4	12.90	-	-	-
