Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACE	0	genome.wustl.edu	37	17	61570872	61570872	+	Silent	SNP	C	C	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	61570872	61570872	C	T	SNP	ACE	ENST00000290866	human	ensembl	69_37n	+1	known	silent	c.2988	p.F996	1.000	pfam_Peptidase_M2,prints_Peptidase_M2	pfam_Peptidase_M2,prints_Peptidase_M2	-	no_errors	ACE	HGNC	ENSG00000159640	118	0	0.00	79	32	28.83	-	-	-
ARCN1	0	genome.wustl.edu	37	11	118468587	118468587	+	Silent	SNP	A	A	G			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	11	118468587	118468587	A	G	SNP	ARCN1	ENST00000264028	human	ensembl	69_37n	+1	known	silent	c.1407	p.Q469	1.000	pfam_Clathrin_mu_C,superfamily_Clathrin_mu_C,pfscan_Clathrin_mu_C	pfam_Clathrin_mu_C,pfam_AP_mu_sigma_su,superfamily_Clathrin_mu_C,superfamily_Longin-like_dom,pfscan_Clathrin_mu_C	-	no_errors	ARCN1	HGNC	ENSG00000095139	277	0	0.00	94	100	51.55	-	-	-
ARNT	0	genome.wustl.edu	37	1	150807078	150807078	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	1	150807078	150807078	C	A	SNP	ARNT	ENST00000358595	human	ensembl	69_37n	-1	known	nonsense	c.739	p.E247*	1.000	pfam_PAS_fold	pfam_PAS_fold_3,pfam_PAS_fold,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,smart_PAS,smart_PAC,pfscan_PAS,pfscan_HLH_DNA-bd,prints_Nuc_translocat,tigrfam_PAS	-	no_errors	ARNT	HGNC	ENSG00000143437	322	0	0.00	248	32	11.43	-	-	-
CCNG2	0	genome.wustl.edu	37	4	78082828	78082828	+	Silent	SNP	C	C	G			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	4	78082828	78082828	C	G	SNP	CCNG2	ENST00000316355	human	ensembl	69_37n	+1	known	silent	c.633	p.L211	1.000	NULL	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like	-	no_errors	CCNG2	HGNC	ENSG00000138764	280	1	0.36	153	47	23.38	-	-	-
CNN2	0	genome.wustl.edu	37	19	1032430	1032430	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	19	1032430	1032430	C	G	SNP	CNN2	ENST00000263097	human	ensembl	69_37n	+1	known	missense	c.225	p.I75M	1.000	pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,prints_Calponin	pfam_Calponin_repeat,pfam_CH-domain,superfamily_CH-domain,smart_CH-domain,pfscan_CH-domain,pfscan_Calponin_repeat,prints_SM22_calponin,prints_Calponin	-	no_errors	CNN2	HGNC	ENSG00000064666	138	0	0.00	97	46	32.17	-	-	-
CNTD2	0	genome.wustl.edu	37	19	40729202	40729202	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	19	40729202	40729202	T	A	SNP	CNTD2	ENST00000430325	human	ensembl	69_37n	-1	known	missense	c.681	p.L227F	0.000	superfamily_Cyclin-like,pirsf_Cyclin_A/B/D/E	pfam_Cyclin_N,superfamily_Cyclin-like,smart_Cyclin-like,pirsf_Cyclin_A/B/D/E	-	no_errors	CNTD2	HGNC	ENSG00000105219	10	0	0.00	9	8	47.06	-	-	-
FAM212B	0	genome.wustl.edu	37	1	112270149	112270149	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	1	112270149	112270149	C	A	SNP	FAM212B	ENST00000357260	human	ensembl	69_37n	-1	known	missense	c.335	p.C112F	0.029	NULL	NULL	-	no_errors	FAM212B	HGNC	ENSG00000197852	51	0	0.00	42	9	17.65	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12736089	12736089	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	X	12736089	12736089	A	T	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	missense	c.3144	p.K1048N	0.998	NULL	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	159	0	0.00	106	37	25.87	-	-	-
HDAC11	0	genome.wustl.edu	37	3	13545616	13545616	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	3	13545616	13545616	G	T	SNP	HDAC11	ENST00000295757	human	ensembl	69_37n	+1	known	missense	c.672	p.E224D	1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	249	0	0.00	164	74	31.09	-	-	-
IFT122	0	genome.wustl.edu	37	3	129207207	129207207	+	Silent	SNP	G	G	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	3	129207207	129207207	G	A	SNP	IFT122	ENST00000296266	human	ensembl	69_37n	+1	known	silent	c.2112	p.A704	0.517	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT122	HGNC	ENSG00000163913	160	0	0.00	140	31	18.13	-	-	-
ITGB4	0	genome.wustl.edu	37	17	73745040	73745040	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	73745040	73745040	G	A	SNP	ITGB4	ENST00000200181	human	ensembl	69_37n	+1	known	missense	c.3230	p.R1077H	1.000	pirsf_Integrin_bsu-4,pfam_Calx_beta,smart_Calx_beta	pirsf_Integrin_bsu-4,pfam_Integrin_bsu_N,pfam_Fibronectin_type3,pfam_Calx_beta,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Fibronectin_type3,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,smart_Calx_beta,smart_Fibronectin_type3,pfscan_Fibronectin_type3,prints_Integrin_bsu	-	no_errors	ITGB4	HGNC	ENSG00000132470	44	0	0.00	55	22	28.21	-	-	-
KCNMA1	0	genome.wustl.edu	37	10	79397263	79397264	+	In_Frame_Ins	INS	-	-	GAG			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	10	79397263	79397264	-	GAG	INS	KCNMA1	ENST00000406533	human	ensembl	69_37n	-1	known	in_frame_ins	c.138_137	p.50in_frame_insS	0.506:0.437	NULL	pfam_K_chnl_Ca-activ_BK_asu,pfam_Ion_trans_dom,pfam_Ion_trans_2,pfam_RCK_N,prints_K_chnl_Ca-activ_BK_asu,prints_K_chnl	-	no_errors	KCNMA1	HGNC	ENSG00000156113	16	0	0.00	34	10	22.73	-	-	-
MAP2	0	genome.wustl.edu	37	2	210557446	210557446	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	2	210557446	210557446	G	T	SNP	MAP2	ENST00000360351	human	ensembl	69_37n	+1	known	missense	c.552	p.K184N	0.000	NULL	pfam_MAP2_projctn,pfam_Tau/MAP_tubulin-bd_rpt	-	no_errors	MAP2	HGNC	ENSG00000078018	89	0	0.00	47	26	35.14	-	-	-
MICAL3	0	genome.wustl.edu	37	22	18300541	18300541	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	22	18300541	18300541	G	A	SNP	MICAL3	ENST00000441493	human	ensembl	69_37n	-1	known	missense	c.4886	p.A1629V	0.949	NULL	pfam_DUF3585,pfam_CH-domain,pfam_CAMSAP_CH,pfam_Znf_LIM,pfam_mOase_FAD-bd,superfamily_CH-domain,smart_CH-domain,smart_Znf_LIM,pfscan_CH-domain,pfscan_Znf_LIM,prints_Rng_hydrolase-like	-	no_errors	MICAL3	HGNC	ENSG00000243156	11	0	0.00	2	9	81.82	-	-	-
PCDH9	0	genome.wustl.edu	37	13	67802338	67802338	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	13	67802338	67802338	A	-	DEL	PCDH9	ENST00000377865	human	ensembl	69_37n	-1	known	frame_shift_del	c.235	p.S79fs	1.000	pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH9	HGNC	ENSG00000184226	140	0	0.00	82	17	17.17	-	-	-
PCDHA4	0	genome.wustl.edu	37	5	140188734	140188734	+	Silent	SNP	C	C	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	5	140188734	140188734	C	T	SNP	PCDHA4	ENST00000530339	human	ensembl	69_37n	+1	known	silent	c.1962	p.H654	0.983	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA4	HGNC	ENSG00000204967	37	0	0.00	25	21	43.75	-	-	-
RFX4	0	genome.wustl.edu	37	12	107141268	107141268	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	12	107141268	107141268	G	T	SNP	RFX4	ENST00000357881	human	ensembl	69_37n	+1	known	missense	c.1714	p.G572W	1.000	NULL	pfam_DNA-bd_RFX	-	no_errors	RFX4	HGNC	ENSG00000111783	73	0	0.00	65	32	32.99	-	-	-
TIMELESS	0	genome.wustl.edu	37	12	56817648	56817648	+	Silent	SNP	G	G	A			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	12	56817648	56817648	G	A	SNP	TIMELESS	ENST00000553532	human	ensembl	69_37n	-1	known	silent	c.1899	p.G633	0.986	NULL	pfam_TIMELESS_C,pfam_Timeless	-	no_errors	TIMELESS	HGNC	ENSG00000111602	308	0	0.00	182	88	32.47	-	-	-
TSC1	0	genome.wustl.edu	37	9	135798857	135798857	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	9	135798857	135798857	A	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	missense	c.386	p.L129H	1.000	pfam_Hamartin,superfamily_ARM-type_fold	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	154	0	0.00	52	51	49.04	-	-	-
ZNF207	0	genome.wustl.edu	37	17	30678929	30678929	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0AU-01A-11D-A12Q-09	TCGA-BH-A0AU-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	d06209b8-8aba-44d8-b94a-990861c2324a	9b7a36f8-d6c8-49f5-bfaf-26661bac3be3	17	30678929	30678929	C	T	SNP	ZNF207	ENST00000394670	human	ensembl	69_37n	+1	known	nonsense	c.166	p.Q56*	1.000	smart_Znf_C2H2-like	smart_Znf_C2H2-like	-	no_errors	ZNF207	HGNC	ENSG00000010244	254	0	0.00	161	63	28.12	-	-	-
