Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALPK1	0	genome.wustl.edu	37	4	113362126	113362126	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	113362126	113362126	C	G	SNP	ALPK1	ENST00000177648	human	ensembl	69_37n	+1	known	missense	c.3592	p.H1198D	1.000	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	pfam_MHCK_EF2_kinase,superfamily_Kinase-like_dom,smart_MHCK_EF2_kinase,pfscan_MHCK_EF2_kinase	-	no_errors	ALPK1	HGNC	ENSG00000073331	193	0	0.00	139	34	19.65	-	-	-
ANAPC1	0	genome.wustl.edu	37	2	112566736	112566736	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	112566736	112566736	C	T	SNP	ANAPC1	ENST00000427997	human	ensembl	69_37n	-1	novel	nonsense	c.2223	p.W741*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANAPC1	HGNC	ENSG00000153107	124	0	0.00	99	20	16.81	-	-	-
ARFGAP3	0	genome.wustl.edu	37	22	43227644	43227644	+	Splice_Site	SNP	T	T	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	22	43227644	43227644	T	G	SNP	ARFGAP3	ENST00000263245	human	ensembl	69_37n	-1	known	splice_site	c.478-2	e6-2	0.984	-	-	-	no_errors	ARFGAP3	HGNC	ENSG00000242247	123	0	0.00	86	38	30.65	-	-	-
BBS7	0	genome.wustl.edu	37	4	122776652	122776652	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	122776652	122776652	C	A	SNP	BBS7	ENST00000264499	human	ensembl	69_37n	-1	known	missense	c.593	p.G198V	1.000	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	superfamily_WD40_repeat_dom,pirsf_Bardet-Biedl_syndrome_7_prot	-	no_errors	BBS7	HGNC	ENSG00000138686	185	0	0.00	140	44	23.91	-	-	-
BCAT2	0	genome.wustl.edu	37	19	49310293	49310293	+	Silent	SNP	C	C	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	49310293	49310293	C	G	SNP	BCAT2	ENST00000316273	human	ensembl	69_37n	-1	known	silent	c.63	p.L21	0.739	NULL	pfam_Aminotrans_IV,superfamily_Aminotrans_IV,pirsf_B_amino_transII,tigrfam_B_amino_transII	-	no_errors	BCAT2	HGNC	ENSG00000105552	77	0	0.00	67	25	27.17	-	-	-
CACNA1G	0	genome.wustl.edu	37	17	48668853	48668853	+	Silent	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	48668853	48668853	C	A	SNP	CACNA1G	ENST00000359106	human	ensembl	69_37n	+1	known	silent	c.2511	p.R837	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_VDCCAlpha1	-	no_errors	CACNA1G	HGNC	ENSG00000006283	67	0	0.00	38	9	19.15	-	-	-
CHD8	0	genome.wustl.edu	37	14	21862192	21862192	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	21862192	21862192	G	T	SNP	CHD8	ENST00000399982	human	ensembl	69_37n	-1	known	missense	c.5762	p.P1921H	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_BRK_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,smart_BRK_domain,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD8	HGNC	ENSG00000100888	42	0	0.00	21	4	16.00	-	-	-
CLEC10A	0	genome.wustl.edu	37	17	6978532	6978532	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	6978532	6978532	C	A	SNP	CLEC10A	ENST00000254868	human	ensembl	69_37n	-1	known	missense	c.792	p.K264N	0.000	pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Lectin_N,pfam_C-type_lectin,superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin,prints_AntifreezeII	-	no_errors	CLEC10A	HGNC	ENSG00000132514	33	0	0.00	11	6	33.33	-	-	-
CUBN	0	genome.wustl.edu	37	10	16893319	16893322	+	Frame_Shift_Del	DEL	ACAG	ACAG	-			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	ACAG	ACAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	16893319	16893322	ACAG	-	DEL	CUBN	ENST00000377833	human	ensembl	69_37n	-1	known	frame_shift_del	c.9578_9575	p.P3192fs	0.575:0.554:0.546:0.993	pfam_CUB,superfamily_CUB,smart_CUB,pfscan_CUB	pfam_CUB,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_CUB,superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_CUB,pfscan_CUB,pfscan_EG-like_dom	-	no_errors	CUBN	HGNC	ENSG00000107611	232	0	0.00	164	39	18.93	-	-	-
DCAF17	0	genome.wustl.edu	37	2	172336674	172336674	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	172336674	172336674	A	C	SNP	DCAF17	ENST00000375255	human	ensembl	69_37n	+1	known	missense	c.1393	p.S465R	1.000	NULL	NULL	-	no_errors	DCAF17	HGNC	ENSG00000115827	373	0	0.00	266	76	22.22	-	-	-
DCAF8L2	0	genome.wustl.edu	37	X	27765438	27765438	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	27765438	27765438	G	A	SNP	DCAF8L2	ENST00000451261	human	ensembl	69_37n	+1	known	silent	c.426	p.E142	0.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	DCAF8L2	HGNC	ENSG00000189186	25	0	0.00	19	6	23.08	-	-	-
DDX11	0	genome.wustl.edu	37	12	31256888	31256888	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	31256888	31256888	G	A	SNP	DDX11	ENST00000407793	human	ensembl	69_37n	+1	known	missense	c.2834	p.R945K	0.000	NULL	pfam_DEAD_2,smart_Helicase-like_DEXD_c2,smart_ATP-dep_Helicase_C,pfscan_Helic_SF1/SF2_ATP-bd_DinG/Rad3,tigrfam_DNA_helicase_DNA-repair_Rad3	-	no_errors	DDX11	HGNC	ENSG00000013573	121	0	0.00	73	31	29.81	-	-	-
DLG1	0	genome.wustl.edu	37	3	196857476	196857476	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	196857476	196857476	C	A	SNP	DLG1	ENST00000346964	human	ensembl	69_37n	-1	known	missense	c.1186	p.D396Y	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pirsf_M-assoc_guanylate_kinase,pfscan_PDZ	pfam_Guanylate_kin,pfam_PDZ,pfam_MAGUK_PEST_N,pfam_L27_1,pfam_PDZ_assoc,pfam_SH3_2,pfam_SH3_domain,superfamily_SH3_domain,superfamily_PDZ,smart_L27,smart_PDZ,smart_SH3_domain,smart_Guanylate_kin/L-typ_Ca_channel,pirsf_M-assoc_guanylate_kinase,pfscan_L27,pfscan_PDZ,pfscan_SH3_domain,pfscan_Guanylate_kin	-	no_errors	DLG1	HGNC	ENSG00000075711	330	0	0.00	222	62	21.83	-	-	-
EDEM3	0	genome.wustl.edu	37	1	184681731	184681731	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	184681731	184681731	T	G	SNP	EDEM3	ENST00000318130	human	ensembl	69_37n	-1	known	missense	c.1372	p.M458L	1.000	pfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	pfam_Glyco_hydro_47,pfam_Protease-assoc_domain,superfamily_Glyco_hydro_47,prints_Glyco_hydro_47	-	no_errors	EDEM3	HGNC	ENSG00000116406	206	0	0.00	259	53	16.99	-	-	-
ERBB2IP	0	genome.wustl.edu	37	5	65372231	65372231	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	65372231	65372231	G	A	SNP	ERBB2IP	ENST00000284037	human	ensembl	69_37n	+1	known	missense	c.4051	p.D1351N	1.000	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	ERBB2IP	HGNC	ENSG00000112851	421	0	0.00	286	88	23.53	-	-	-
ERF	0	genome.wustl.edu	37	19	42753286	42753286	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42753286	42753286	G	A	SNP	ERF	ENST00000222329	human	ensembl	69_37n	-1	known	silent	c.978	p.L326	1.000	NULL	pfam_Ets,smart_Ets,prints_Ets,pfscan_Ets	-	no_errors	ERF	HGNC	ENSG00000105722	78	0	0.00	41	19	31.67	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115982	8115983	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	10	8115982	8115983	-	T	INS	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1331_1332	p.*445fs	1.000:0.913	NULL	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	89	0	0.00	57	12	17.39	-	-	-
HERC1	0	genome.wustl.edu	37	15	64017562	64017562	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	15	64017562	64017562	T	A	SNP	HERC1	ENST00000443617	human	ensembl	69_37n	-1	known	missense	c.3497	p.E1166V	1.000	NULL	pfam_Reg_chr_condens,pfam_HECT,pfam_WD40_repeat,pfam_SPRY_rcpt,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_HECT,superfamily_WD40_repeat_dom,superfamily_ConA-like_lec_gl,superfamily_UBA-like,superfamily_ARM-type_fold,smart_SPla/RYanodine_receptor_subgr,smart_WD40_repeat,smart_HECT,pfscan_B30.2/SPRY,pfscan_HECT,pfscan_Reg_chr_condens,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_Reg_chr_condens	-	no_errors	HERC1	HGNC	ENSG00000103657	113	0	0.00	131	35	20.83	-	-	-
IGF2R	0	genome.wustl.edu	37	6	160500677	160500677	+	Silent	SNP	A	A	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	160500677	160500677	A	G	SNP	IGF2R	ENST00000356956	human	ensembl	69_37n	+1	known	silent	c.5544	p.G1848	0.973	pfam_CIMR,superfamily_Man6P_isomerase_rcpt-bd_dom	pfam_CIMR,pfam_FN_type2_col-bd,superfamily_Man6P_isomerase_rcpt-bd_dom,superfamily_Kringle-like,smart_FN_type2_col-bd,pfscan_FN_type2_col-bd	-	no_errors	IGF2R	HGNC	ENSG00000197081	160	0	0.00	114	33	22.45	-	-	-
IGSF8	0	genome.wustl.edu	37	1	160064882	160064882	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	160064882	160064882	A	C	SNP	IGSF8	ENST00000314485	human	ensembl	69_37n	-1	known	missense	c.219	p.D73E	0.001	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	IGSF8	HGNC	ENSG00000162729	68	0	0.00	50	15	23.08	-	-	-
JARID2	0	genome.wustl.edu	37	6	15374373	15374373	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	15374373	15374373	C	T	SNP	JARID2	ENST00000341776	human	ensembl	69_37n	+1	known	missense	c.71	p.S24L	1.000	NULL	pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_TF_JmjN,pfam_Znf_C5HC2,superfamily_ARID/BRIGHT_DNA-bd,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	JARID2	HGNC	ENSG00000008083	362	0	0.00	250	76	23.31	-	-	-
KIAA1919	0	genome.wustl.edu	37	6	111587599	111587599	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	111587599	111587599	T	G	SNP	KIAA1919	ENST00000368847	human	ensembl	69_37n	+1	known	missense	c.834	p.F278L	0.998	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	pfam_MFS,superfamily_MFS_dom_general_subst_transpt	-	no_errors	KIAA1919	HGNC	ENSG00000173214	239	2	0.83	172	56	24.56	-	-	-
KPNB1	0	genome.wustl.edu	37	17	45754386	45754386	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	45754386	45754386	G	C	SNP	KPNB1	ENST00000290158	human	ensembl	69_37n	+1	known	missense	c.1996	p.V666L	1.000	superfamily_ARM-type_fold	pfam_HEAT,pfam_Importin-beta_N,pfam_Armadillo,superfamily_ARM-type_fold,smart_Importin-beta_N,smart_Armadillo,pfscan_HEAT_type_2,pfscan_Importin-beta_N	-	no_errors	KPNB1	HGNC	ENSG00000108424	355	0	0.00	303	94	23.68	-	-	-
KRTAP9-7	0	genome.wustl.edu	37	17	39432019	39432019	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	39432019	39432019	G	A	SNP	KRTAP9-7	ENST00000391354	human	ensembl	69_37n	+1	known	missense	c.70	p.V24M	0.028	NULL	NULL	-	no_errors	KRTAP9-7	HGNC	ENSG00000180386	126	1	0.79	125	43	25.60	-	-	-
LAS1L	0	genome.wustl.edu	37	X	64734716	64734716	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	64734716	64734716	T	A	SNP	LAS1L	ENST00000374811	human	ensembl	69_37n	-1	known	missense	c.2065	p.T689S	0.000	NULL	pfam_Las1	-	no_errors	LAS1L	HGNC	ENSG00000001497	80	0	0.00	46	18	28.12	-	-	-
LINC00479	0	genome.wustl.edu	37	21	43133777	43133777	+	RNA	SNP	G	G	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	21	43133777	43133777	G	T	SNP	LINC00479	ENST00000412102	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	LINC00479	HGNC	ENSG00000236384	31	0	0.00	29	4	12.12	-	-	-
LRIG3	0	genome.wustl.edu	37	12	59283825	59283825	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	12	59283825	59283825	G	C	SNP	LRIG3	ENST00000320743	human	ensembl	69_37n	-1	known	missense	c.612	p.I204M	0.976	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Immunoglobulin,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LRIG3	HGNC	ENSG00000139263	450	1	0.22	364	129	26.17	-	-	-
LRRC16B	0	genome.wustl.edu	37	14	24538364	24538364	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	14	24538364	24538364	G	A	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	+1	known	missense	c.4001	p.R1334Q	0.968	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	24	0	0.00	18	6	25.00	-	-	-
MAN2B1	0	genome.wustl.edu	37	19	12768878	12768878	+	Silent	SNP	G	G	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12768878	12768878	G	C	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	silent	c.1308	p.L436	0.998	pfam_Glyco_hydro_38_cen_dom,smart_Glyco_hydro_38_cen_dom	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	14	0	0.00	12	6	33.33	-	-	-
MAN2B1	0	genome.wustl.edu	37	19	12769137	12769137	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769137	12769137	G	C	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	missense	c.1131	p.F377L	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	60	0	0.00	40	12	23.08	-	-	-
MAN2B1	0	genome.wustl.edu	37	19	12769247	12769247	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	12769247	12769247	G	A	SNP	MAN2B1	ENST00000456935	human	ensembl	69_37n	-1	known	silent	c.1104	p.L368	1.000	pfam_Glyco_hydro_38_core,superfamily_Glyco_hydro/deAcase_b/a-brl	pfam_Glyco_hydro_38_C,pfam_Glyco_hydro_38_core,pfam_Glyco_hydro_38_cen_dom,superfamily_Glyco_hydro-type_carb-bd,superfamily_Glyco_hydro/deAcase_b/a-brl,smart_Glyco_hydro_38_cen_dom	-	no_errors	MAN2B1	HGNC	ENSG00000104774	80	0	0.00	60	24	28.57	-	-	-
MCM4	0	genome.wustl.edu	37	8	48878885	48878885	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	48878885	48878885	A	T	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	+1	known	missense	c.971	p.E324V	1.000	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	19	0	0.00	15	5	25.00	-	-	-
MMAA	0	genome.wustl.edu	37	4	146560633	146560633	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	146560633	146560633	G	T	SNP	MMAA	ENST00000281317	human	ensembl	69_37n	+1	known	missense	c.342	p.R114S	1.000	pfam_ArgK,tigrfam_ArgK	pfam_ArgK,pfam_Cbl_biosynth_CobW-like,tigrfam_ArgK	-	no_errors	MMAA	HGNC	ENSG00000151611	125	0	0.00	84	31	26.96	-	-	-
MUC16	0	genome.wustl.edu	37	19	9091544	9091544	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	9091544	9091544	A	G	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.271	p.S91P	0.002	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	164	0	0.00	105	34	24.46	-	-	-
NIPAL4	0	genome.wustl.edu	37	5	156899862	156899862	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	5	156899862	156899862	C	A	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	+1	known	missense	c.1295	p.P432H	0.991	NULL	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	42	0	0.00	33	18	34.62	-	-	-
NR2C2	0	genome.wustl.edu	37	3	15065706	15065706	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	15065706	15065706	G	A	SNP	NR2C2	ENST00000323373	human	ensembl	69_37n	+1	known	silent	c.846	p.T282	0.230	superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt	-	no_errors	NR2C2	HGNC	ENSG00000177463	143	0	0.00	81	26	24.30	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123630873	123630873	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	X	123630873	123630873	C	T	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	missense	c.3688	p.E1230K	1.000	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	92	0	0.00	56	24	30.00	-	-	-
OR13C8	0	genome.wustl.edu	37	9	107331596	107331596	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107331596	107331596	A	G	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	+1	known	missense	c.148	p.I50V	0.046	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	589	1	0.17	408	167	28.94	-	-	-
OR13C8	0	genome.wustl.edu	37	9	107332384	107332384	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107332384	107332384	T	A	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	+1	known	nonsense	c.936	p.C312*	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	51	0	0.00	44	18	29.03	-	-	-
OR13C8	0	genome.wustl.edu	37	9	107332385	107332385	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	9	107332385	107332385	A	G	SNP	OR13C8	ENST00000335040	human	ensembl	69_37n	+1	known	missense	c.937	p.R313G	0.126	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR13C8	HGNC	ENSG00000186943	51	0	0.00	45	18	28.57	-	-	-
OR8H2	0	genome.wustl.edu	37	11	55872586	55872586	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	11	55872586	55872586	A	G	SNP	OR8H2	ENST00000313503	human	ensembl	69_37n	+1	known	missense	c.68	p.E23G	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8H2	HGNC	ENSG00000181767	402	1	0.25	319	91	22.20	-	-	-
PALM3	0	genome.wustl.edu	37	19	14168164	14168164	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	14168164	14168164	T	-	DEL	PALM3	ENST00000340790	human	ensembl	69_37n	-1	known	frame_shift_del	c.125	p.K42fs	1.000	NULL	NULL	-	no_errors	PALM3	HGNC	ENSG00000187867	8	0	0.00	4	2	33.33	-	-	-
PDE4DIP	0	genome.wustl.edu	37	1	144882723	144882723	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	144882723	144882723	T	G	SNP	PDE4DIP	ENST00000369356	human	ensembl	69_37n	-1	known	missense	c.3296	p.Q1099P	1.000	NULL	pfam_Spindle_assoc,superfamily_ARM-type_fold	-	no_errors	PDE4DIP	HGNC	ENSG00000178104	713	0	0.00	580	72	11.04	-	-	-
PGLS	0	genome.wustl.edu	37	19	17627089	17627089	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	17627089	17627089	G	A	SNP	PGLS	ENST00000252603	human	ensembl	69_37n	+1	known	silent	c.396	p.Q132	1.000	tigrfam_6-phosphogluconolactonase_DevB	tigrfam_6-phosphogluconolactonase_DevB	-	no_errors	PGLS	HGNC	ENSG00000130313	49	0	0.00	39	12	23.53	-	-	-
PRDM15	0	genome.wustl.edu	37	21	43291676	43291676	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	21	43291676	43291676	C	-	DEL	PRDM15	ENST00000269844	human	ensembl	69_37n	-1	known	frame_shift_del	c.468	p.N157fs	0.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_SET_dom,pfscan_Znf_C2H2	-	no_errors	PRDM15	HGNC	ENSG00000141956	85	0	0.00	55	19	25.33	-	-	-
PTPRU	0	genome.wustl.edu	37	1	29652166	29652166	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	29652166	29652166	C	A	SNP	PTPRU	ENST00000345512	human	ensembl	69_37n	+1	known	nonsense	c.4334	p.S1445*	0.974	NULL	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_MAM_dom,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_MAM_dom,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,prints_Tyr_Pase_rcpt/non-rcpt,prints_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt	-	no_errors	PTPRU	HGNC	ENSG00000060656	148	0	0.00	92	38	29.23	-	-	-
RAB3GAP2	0	genome.wustl.edu	37	1	220355687	220355687	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	220355687	220355687	A	C	SNP	RAB3GAP2	ENST00000358951	human	ensembl	69_37n	-1	known	missense	c.2222	p.F741C	1.000	NULL	superfamily_WD40_repeat_dom	-	no_errors	RAB3GAP2	HGNC	ENSG00000118873	137	0	0.00	197	36	15.45	-	-	-
RIF1	0	genome.wustl.edu	37	2	152299782	152299782	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	2	152299782	152299782	G	A	SNP	RIF1	ENST00000243326	human	ensembl	69_37n	+1	known	missense	c.1744	p.A582T	1.000	NULL	pfam_Rif1_N,superfamily_ARM-type_fold	-	no_errors	RIF1	HGNC	ENSG00000080345	346	0	0.00	208	67	24.36	-	-	-
RPAP2	0	genome.wustl.edu	37	1	92789908	92789908	+	Silent	SNP	C	C	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	92789908	92789908	C	T	SNP	RPAP2	ENST00000370343	human	ensembl	69_37n	+1	known	silent	c.1431	p.T477	0.034	NULL	pfam_DUF408	-	no_errors	RPAP2	HGNC	ENSG00000122484	57	0	0.00	24	21	46.67	-	-	-
RXRG	0	genome.wustl.edu	37	1	165398094	165398094	+	Silent	SNP	T	T	G			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	1	165398094	165398094	T	G	SNP	RXRG	ENST00000359842	human	ensembl	69_37n	-1	known	silent	c.159	p.P53	0.287	pfam_DUF3345	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_DUF3345,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Retinoid-X_rcpt/HNF4,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt,prints_COUP_TF	-	no_errors	RXRG	HGNC	ENSG00000143171	71	0	0.00	64	17	20.99	-	-	-
SASH1	0	genome.wustl.edu	37	6	148867225	148867225	+	Silent	SNP	C	C	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	148867225	148867225	C	T	SNP	SASH1	ENST00000367467	human	ensembl	69_37n	+1	known	silent	c.3423	p.V1141	0.102	NULL	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SASH1	HGNC	ENSG00000111961	51	0	0.00	26	10	27.03	-	-	-
SEC31A	0	genome.wustl.edu	37	4	83795849	83795849	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	4	83795849	83795849	G	A	SNP	SEC31A	ENST00000432794	human	ensembl	69_37n	-1	known	missense	c.554	p.A185V	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEC31A	HGNC	ENSG00000138674	166	0	0.00	107	28	20.59	-	-	-
SLCO5A1	0	genome.wustl.edu	37	8	70585135	70585135	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	8	70585135	70585135	T	C	SNP	SLCO5A1	ENST00000260126	human	ensembl	69_37n	-1	known	missense	c.2516	p.E839G	0.998	NULL	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO5A1	HGNC	ENSG00000137571	89	0	0.00	59	20	25.32	-	-	-
TEX26	0	genome.wustl.edu	37	13	31543174	31543174	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	13	31543174	31543174	T	C	SNP	TEX26	ENST00000380473	human	ensembl	69_37n	+1	known	missense	c.799	p.S267P	0.982	NULL	NULL	-	no_errors	TEX26	HGNC	ENSG00000175664	227	1	0.44	107	54	33.33	-	-	-
TEX33	0	genome.wustl.edu	37	22	37387521	37387521	+	Splice_Site	DEL	C	C	-			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	22	37387521	37387521	C	-	DEL	TEX33	ENST00000381821	human	ensembl	69_37n	-1	known	splice_site_del	c.745+1	e4+1	1.000	-	-	-	no_errors	TEX33	HGNC	ENSG00000185264	198	0	0.00	136	35	20.47	-	-	-
TRIM38	0	genome.wustl.edu	37	6	25973465	25973465	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	6	25973465	25973465	G	T	SNP	TRIM38	ENST00000349458	human	ensembl	69_37n	+1	known	missense	c.826	p.V276F	0.350	pfscan_B30.2/SPRY	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM38	HGNC	ENSG00000112343	262	0	0.00	162	61	27.35	-	-	-
ULK2	0	genome.wustl.edu	37	17	19700727	19700727	+	Silent	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	17	19700727	19700727	G	A	SNP	ULK2	ENST00000361658	human	ensembl	69_37n	-1	known	silent	c.1791	p.I597	1.000	pirsf_Ser/Thr_kin_STPK_Ulk-1/2	pfam_Prot_kinase_cat_dom,pfam_Ser/Thr_kinase_C,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,pfam_RIO-like_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ser/Thr_kin_STPK_Ulk-1/2,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	ULK2	HGNC	ENSG00000083290	41	0	0.00	33	9	21.43	-	-	-
VIPR1	0	genome.wustl.edu	37	3	42567473	42567473	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	3	42567473	42567473	G	T	SNP	VIPR1	ENST00000438259	human	ensembl	69_37n	+1	known	missense	c.14	p.R5L	0.000	NULL	pfam_GPCR_2_secretin-like,pfscan_GPCR_2-like,prints_GPCR_2_secretin-like,prints_GPCR_2_VIP_rcpt_1	-	no_errors	VIPR1	HGNC	ENSG00000114812	46	0	0.00	28	10	26.32	-	-	-
ZNF526	0	genome.wustl.edu	37	19	42728940	42728940	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0AZ-01A-21D-A12Q-09	TCGA-BH-A0AZ-11A-22D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6d90bb8-ad96-4cb8-a96f-a8202fcbc58f	4124d527-3ea7-43d5-81b7-0fc9172be9b0	19	42728940	42728940	G	A	SNP	ZNF526	ENST00000301215	human	ensembl	69_37n	+1	known	missense	c.385	p.A129T	0.057	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF526	HGNC	ENSG00000167625	30	0	0.00	25	7	21.88	-	-	-
