Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABO	0	genome.wustl.edu	37	9	136131416	136131416	+	RNA	SNP	G	G	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	9	136131416	136131416	G	A	SNP	ABO	ENST00000453660	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.004	-	-	-	no_errors	ABO	HGNC	ENSG00000175164	15	0	0.00	8	9	52.94	-	-	-
ARHGAP15	0	genome.wustl.edu	37	2	144525681	144525681	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	144525681	144525681	C	T	SNP	ARHGAP15	ENST00000295095	human	ensembl	69_37n	+1	known	silent	c.1368	p.N456	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,pfam_Pleckstrin_homology,superfamily_Rho_GTPase_activation_prot,smart_Pleckstrin_homology,smart_RhoGAP_dom,pfscan_Pleckstrin_homology,pfscan_RhoGAP_dom	-	no_errors	ARHGAP15	HGNC	ENSG00000075884	170	0	0.00	78	19	19.59	-	-	-
BPHL	0	genome.wustl.edu	37	6	3119540	3119540	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	3119540	3119540	C	A	SNP	BPHL	ENST00000424847	human	ensembl	69_37n	+1	known	nonsense	c.129	p.Y43*	0.001	NULL	NULL	-	no_errors	BPHL	HGNC	ENSG00000137274	43	0	0.00	36	5	11.90	-	-	-
CHRNA3	0	genome.wustl.edu	37	15	78894311	78894311	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	15	78894311	78894311	C	T	SNP	CHRNA3	ENST00000326828	human	ensembl	69_37n	-1	known	missense	c.673	p.E225K	1.000	pfam_Neur_chan_lig-bd,superfamily_Neur_chan_lig-bd,tigrfam_Neur_channel	pfam_Neurotrans-gated_channel_TM,pfam_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,prints_Nicotinic_acetylcholine_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	CHRNA3	HGNC	ENSG00000080644	476	0	0.00	258	54	17.25	-	-	-
ERCC8	0	genome.wustl.edu	37	5	60199504	60199504	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	5	60199504	60199504	T	C	SNP	ERCC8	ENST00000265038	human	ensembl	69_37n	-1	known	missense	c.521	p.K174R	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	ERCC8	HGNC	ENSG00000049167	150	0	0.00	100	19	15.97	-	-	-
FSCN1	0	genome.wustl.edu	37	7	5644991	5644991	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	5644991	5644991	C	T	SNP	FSCN1	ENST00000382361	human	ensembl	69_37n	+1	known	silent	c.1368	p.C456	0.999	pfam_Fascin-domain,superfamily_Actin_cross-linking	pfam_Fascin-domain,superfamily_Actin_cross-linking	-	no_errors	FSCN1	HGNC	ENSG00000075618	55	0	0.00	25	6	19.35	-	-	-
FUNDC1	0	genome.wustl.edu	37	X	44386496	44386498	+	In_Frame_Del	DEL	TTG	TTG	-			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	44386496	44386498	TTG	-	DEL	FUNDC1	ENST00000378045	human	ensembl	69_37n	-1	known	in_frame_del	c.377_375	p.N126in_frame_del	0.997:1.000:1.000	pfam_FUN14	pfam_FUN14	-	no_errors	FUNDC1	HGNC	ENSG00000069509	642	0	0.00	192	62	24.12	-	-	-
GOLGA6L5	0	genome.wustl.edu	37	15	85053219	85053219	+	RNA	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	15	85053219	85053219	C	T	SNP	GOLGA6L5	ENST00000414190	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.073	-	-	-	no_errors	GOLGA6L5	HGNC	ENSG00000230373	10	0	0.00	12	10	45.45	-	-	-
HGF	0	genome.wustl.edu	37	7	81392029	81392029	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	81392029	81392029	G	C	SNP	HGF	ENST00000222390	human	ensembl	69_37n	-1	known	missense	c.248	p.T83S	1.000	pfam_PAN-1_domain,smart_Pan_app,pfscan_Pan_app	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_PAN-1_domain,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Pan_app,smart_Kringle,smart_Peptidase_S1_S6,pfscan_Pan_app,pfscan_Kringle,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	HGF	HGNC	ENSG00000019991	550	0	0.00	272	51	15.79	-	-	-
HSP90AA1	0	genome.wustl.edu	37	14	102551267	102551269	+	In_Frame_Del	DEL	TTC	TTC	-			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TTC	TTC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	14	102551267	102551269	TTC	-	DEL	HSP90AA1	ENST00000334701	human	ensembl	69_37n	-1	known	in_frame_del	c.1098_1096	p.E366in_frame_del	0.047:0.981:0.982	pirsf_Hsp90,pfam_Hsp90	pirsf_Hsp90,pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,prints_Hsp90_N	-	no_errors	HSP90AA1	HGNC	ENSG00000080824	463	0	0.00	190	27	12.39	-	-	-
KLHL30	0	genome.wustl.edu	37	2	239057685	239057685	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	239057685	239057685	G	T	SNP	KLHL30	ENST00000409223	human	ensembl	69_37n	+1	known	missense	c.1377	p.K459N	1.000	pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL30	HGNC	ENSG00000168427	62	0	0.00	29	9	23.68	-	-	-
KRT27	0	genome.wustl.edu	37	17	38935976	38935976	+	Silent	SNP	G	G	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	17	38935976	38935976	G	A	SNP	KRT27	ENST00000301656	human	ensembl	69_37n	-1	known	silent	c.822	p.D274	0.018	pfam_F,superfamily_Prefoldin	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT27	HGNC	ENSG00000171446	88	0	0.00	43	14	24.56	-	-	-
L1TD1	0	genome.wustl.edu	37	1	62673212	62673212	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	1	62673212	62673212	C	T	SNP	L1TD1	ENST00000498273	human	ensembl	69_37n	+1	known	silent	c.912	p.S304	0.024	pfam_Transposase_22	pfam_Transposase_22,superfamily_STAT_TF_coiled-coil	-	no_errors	L1TD1	HGNC	ENSG00000240563	189	1	0.53	97	24	19.83	-	-	-
MAML2	0	genome.wustl.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	95825407	95825407	C	T	SNP	MAML2	ENST00000440572	human	ensembl	69_37n	-1	known	silent	c.1788	p.Q596	0.003	NULL	pfam_Neuroggenic_mastermind-like_N	-	no_errors	MAML2	HGNC	ENSG00000184384	196	1	0.51	189	45	19.15	-	-	-
MTERF	0	genome.wustl.edu	37	7	91503433	91503433	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	7	91503433	91503433	C	G	SNP	MTERF	ENST00000351870	human	ensembl	69_37n	-1	known	missense	c.675	p.L225F	0.947	pfam_Mit_transcrip_term-rel	pfam_Mit_transcrip_term-rel,smart_Mit_transcrip_term-rel	-	no_errors	MTERF	HGNC	ENSG00000127989	139	0	0.00	65	18	21.69	-	-	-
MYBL2	0	genome.wustl.edu	37	20	42311462	42311462	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	20	42311462	42311462	G	A	SNP	MYBL2	ENST00000217026	human	ensembl	69_37n	+1	known	missense	c.215	p.R72K	1.000	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	pfam_C-myb_C,pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	MYBL2	HGNC	ENSG00000101057	159	0	0.00	86	42	32.81	-	-	-
MYH7B	0	genome.wustl.edu	37	20	33581196	33581196	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	20	33581196	33581196	C	T	SNP	MYH7B	ENST00000262873	human	ensembl	69_37n	+1	novel	silent	c.2493	p.A831	0.989	pfscan_IQ_motif_EF-hand-BS	pfam_Myosin_tail,pfam_Myosin_head_motor_dom,pfam_Myosin_N,superfamily_Myosin_S1_N,superfamily_Prefoldin,superfamily_tRNA-bd_arm,superfamily_t-SNARE,smart_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom	-	no_errors	MYH7B	HGNC	ENSG00000078814	51	0	0.00	40	14	25.45	-	-	-
NUP153	0	genome.wustl.edu	37	6	17669532	17669532	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	17669532	17669532	G	C	SNP	NUP153	ENST00000537253	human	ensembl	69_37n	-1	known	missense	c.1006	p.L336V	0.038	pfam_Nucleoporin_Nup153	pfam_Nucleoporin_Nup153,pfam_Znf_RanBP2,pfam_Retro-transposon_transp_CS,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	NUP153	HGNC	ENSG00000124789	148	0	0.00	87	23	20.91	-	-	-
PAN2	0	genome.wustl.edu	37	12	56721335	56721335	+	Silent	SNP	C	C	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	12	56721335	56721335	C	A	SNP	PAN2	ENST00000425394	human	ensembl	69_37n	-1	known	silent	c.732	p.V244	0.998	superfamily_WD40_repeat_dom	pfam_Exonuclease_RNaseT/DNA_pol3,pfam_Peptidase_C19,superfamily_RNaseH-like_dom,superfamily_WD40_repeat_dom,smart_Exonuclease,pfscan_Peptidase_C19	-	no_errors	PAN2	HGNC	ENSG00000135473	97	0	0.00	65	18	21.69	-	-	-
PHKA1	0	genome.wustl.edu	37	X	71813106	71813106	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	71813106	71813106	T	A	SNP	PHKA1	ENST00000373539	human	ensembl	69_37n	-1	known	missense	c.3142	p.T1048S	0.000	NULL	pfam_Glyco_hydro_15,superfamily_6-hairpin_glycosidase-like	-	no_errors	PHKA1	HGNC	ENSG00000067177	282	0	0.00	102	40	28.17	-	-	-
PHLDB1	0	genome.wustl.edu	37	11	118486917	118486917	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	118486917	118486917	C	A	SNP	PHLDB1	ENST00000361417	human	ensembl	69_37n	+1	known	missense	c.346	p.L116I	1.000	superfamily_SMAD_FHA_domain	pfam_Pleckstrin_homology,superfamily_SMAD_FHA_domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB1	HGNC	ENSG00000019144	24	0	0.00	18	8	29.63	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	108	0	0.00	64	17	20.73	-	-	-
PINK1	0	genome.wustl.edu	37	1	20964471	20964471	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	1	20964471	20964471	T	C	SNP	PINK1	ENST00000321556	human	ensembl	69_37n	+1	known	missense	c.524	p.M175T	0.297	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PINK1	HGNC	ENSG00000158828	86	0	0.00	71	15	17.44	-	-	-
POLDIP2	0	genome.wustl.edu	37	17	26680331	26680331	+	RNA	SNP	A	A	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	17	26680331	26680331	A	C	SNP	POLDIP2	ENST00000003607	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	122	0	0.00	84	23	21.50	-	-	-
PPP2R5D	0	genome.wustl.edu	37	6	42976144	42976144	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	42976144	42976144	C	T	SNP	PPP2R5D	ENST00000470467	human	ensembl	69_37n	+1	novel	nonsense	c.715	p.Q239*	1.000	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	pfam_PP2A_B56,superfamily_ARM-type_fold,pirsf_PP2A_B56	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PPP2R5D	HGNC	ENSG00000112640	116	0	0.00	75	25	25.00	-	-	-
RPGR	0	genome.wustl.edu	37	X	38145532	38145534	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	X	38145532	38145534	TCC	-	DEL	RPGR	ENST00000378505	human	ensembl	69_37n	-1	known	in_frame_del	c.2720_2718	p.E907in_frame_del	0.994:0.977:0.978	NULL	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	-	no_errors	RPGR	HGNC	ENSG00000156313	12	0	0.00	5	4	44.44	-	-	-
RTN2	0	genome.wustl.edu	37	19	45997923	45997923	+	Silent	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	19	45997923	45997923	C	T	SNP	RTN2	ENST00000245923	human	ensembl	69_37n	-1	known	silent	c.420	p.L140	0.983	NULL	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN2	HGNC	ENSG00000125744	98	0	0.00	61	15	19.74	-	-	-
SRF	0	genome.wustl.edu	37	6	43141698	43141698	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	6	43141698	43141698	G	C	SNP	SRF	ENST00000265354	human	ensembl	69_37n	+1	known	missense	c.627	p.E209D	1.000	superfamily_TF_MADSbox	pfam_TF_MADSbox,superfamily_TF_MADSbox,smart_TF_MADSbox,pfscan_TF_MADSbox,prints_TF_MADSbox	-	no_errors	SRF	HGNC	ENSG00000112658	154	0	0.00	102	23	18.40	-	-	-
TMEM247	0	genome.wustl.edu	37	2	46707888	46707888	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	46707888	46707888	G	-	DEL	TMEM247	ENST00000434431	human	ensembl	69_37n	+1	known	frame_shift_del	c.462	p.A155fs	0.083	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	TMEM247	HGNC	ENSG00000187600	19	0	0.00	9	3	25.00	-	-	-
TRPM5	0	genome.wustl.edu	37	11	2434145	2434145	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	11	2434145	2434145	C	T	SNP	TRPM5	ENST00000452833	human	ensembl	69_37n	-1	known	missense	c.2200	p.V734M	0.998	NULL	superfamily_Ankyrin_rpt-contain_dom	-	no_errors	TRPM5	HGNC	ENSG00000070985	15	0	0.00	16	5	22.73	-	-	-
TTN	0	genome.wustl.edu	37	2	179647587	179647587	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	2	179647587	179647587	T	C	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.3046	p.S1016G	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	87	0	0.00	49	15	23.44	-	-	-
ZNF208	0	genome.wustl.edu	37	19	22170078	22170078	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BF-01A-21D-A12Q-09	TCGA-BH-A0BF-11A-31D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	39221056-704b-4a23-9b8d-3178dd9e790d	df0f49fe-e68c-42d3-8dbf-fc08672ac4fb	19	22170078	22170078	G	C	SNP	ZNF208	ENST00000397126	human	ensembl	69_37n	-1	known	missense	c.166	p.L56V	0.007	superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF208	HGNC	ENSG00000160321	637	0	0.00	184	43	18.94	-	-	-
