Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AARS2	0	genome.wustl.edu	37	6	44269188	44269189	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	6	44269188	44269189	-	T	INS	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2612_2611	p.T871fs	0.989:0.336	tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	38	0	0.00	26	3	10.34	-	-	-
AARS2	0	genome.wustl.edu	37	6	44269188	44269189	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	6	44269188	44269189	-	T	INS	AARS2	ENST00000244571	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2612_2611	p.T871fs	0.989:0.336	tigrfam_Ala-tRNA-synth_IIc	pfam_Ala-tRNA-synth_IIc_N,pfam_tRNA_SAD,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,smart_tRNA_SAD,prints_Ala-tRNA-synth_IIc,pfscan_Ala-tRNA-synth_IIc_core,tigrfam_Ala-tRNA-synth_IIc	-	no_errors	AARS2	HGNC	ENSG00000124608	62	0	0.00	26	3	10.34	-	-	-
ADAMTS9	0	genome.wustl.edu	37	3	64554073	64554073	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	64554073	64554073	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4495	p.P1499S	1.000	smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	351	0	0.00	35	16	31.37	-	-	-
ADAMTS9	0	genome.wustl.edu	37	3	64554073	64554073	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	64554073	64554073	G	A	SNP	ADAMTS9	ENST00000498707	human	ensembl	69_37n	-1	known	missense	c.4495	p.P1499S	1.000	smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Pept_M12B_GON-ADAMTSs,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B_N,pfam_ADAM_spacer1,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_Pept_M12B_GON-ADAMTSs,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS9	HGNC	ENSG00000163638	127	0	0.00	35	16	31.37	-	-	-
ALDH1L1	0	genome.wustl.edu	37	3	125855665	125855666	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	125855665	125855666	-	C	INS	ALDH1L1	ENST00000393434	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1286_1285	p.E429fs	0.000:0.000	superfamily_Ald_DH/histidinol_DH,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH	pfam_Aldehyde_DH_dom,pfam_Formyl_transf_N,pfam_Formyl_trans_C,pfam_Acyl_carrier_prot-like,superfamily_Ald_DH/histidinol_DH,superfamily_Formyl_transf_N,superfamily_Formyl_transferase_C-like,superfamily_Acyl_carrier_prot-like,pirsf_10_FTHF_DH,pfscan_Acyl_carrier_prot-like	-	no_errors	ALDH1L1	HGNC	ENSG00000144908	10	0	0.00	0	2	100.00	-	-	-
ALDOA	0	genome.wustl.edu	37	16	30080978	30080979	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	16	30080978	30080979	-	C	INS	ALDOA	ENST00000338110	human	ensembl	69_37n	+1	known	frame_shift_ins	c.783_784	p.A263fs	1.000:1.000	pfam_Aldolase_I	pfam_Aldolase_I	-	no_errors	ALDOA	HGNC	ENSG00000149925	26	0	0.00	18	3	14.29	-	-	-
CACNA1B	0	genome.wustl.edu	37	9	140866030	140866030	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	9	140866030	140866030	T	-	DEL	CACNA1B	ENST00000371355	human	ensembl	69_37n	+1	known	frame_shift_del	c.1532	p.T512fs	1.000	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,pfscan_EF_HAND_2,prints_VDCCAlpha1,prints_VDCC_N_a1su,prints_PKD_2	-	no_errors	CACNA1B	HGNC	ENSG00000148408	12	0	0.00	2	2	50.00	-	-	-
CDC42EP1	0	genome.wustl.edu	37	22	37962638	37962639	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	22	37962638	37962639	-	C	INS	CDC42EP1	ENST00000249014	human	ensembl	69_37n	+1	known	frame_shift_ins	c.282_283	p.R96fs	0.000:0.001	NULL	pfam_PAK_box_Rho-bd,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd	-	no_errors	CDC42EP1	HGNC	ENSG00000128283	24	0	0.00	15	3	16.67	-	-	-
CLASP1	0	genome.wustl.edu	37	2	122125357	122125358	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	122125357	122125358	-	C	INS	CLASP1	ENST00000263710	human	ensembl	69_37n	-1	known	frame_shift_ins	c.3693_3692	p.S1232fs	0.024:0.316	superfamily_ARM-type_fold	pfam_CLASP_N_dom,pfam_HEAT,superfamily_ARM-type_fold,pfscan_HEAT_type_2	-	no_errors	CLASP1	HGNC	ENSG00000074054	25	0	0.00	16	3	15.79	-	-	-
COL13A1	0	genome.wustl.edu	37	10	71690202	71690203	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	10	71690202	71690203	-	C	INS	COL13A1	ENST00000356340	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1544_1545	p.G518fs	1.000:0.979	pfam_Collagen	pfam_Collagen	-	no_errors	COL13A1	HGNC	ENSG00000197467	12	0	0.00	13	2	13.33	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2830770	2830770	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	2830770	2830770	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.8795	p.R2932Q	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	165	0	0.00	92	44	32.35	-	-	-
CSMD1	0	genome.wustl.edu	37	8	2830770	2830770	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	8	2830770	2830770	C	T	SNP	CSMD1	ENST00000520002	human	ensembl	69_37n	-1	known	missense	c.8795	p.R2932Q	0.997	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD1	HGNC	ENSG00000183117	178	0	0.00	92	44	32.35	-	-	-
CSPG4	0	genome.wustl.edu	37	15	75983021	75983021	+	Silent	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	15	75983021	75983021	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.385	p.L129	0.431	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	11	0	0.00	5	6	54.55	-	-	-
CSPG4	0	genome.wustl.edu	37	15	75983021	75983021	+	Silent	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	15	75983021	75983021	G	A	SNP	CSPG4	ENST00000308508	human	ensembl	69_37n	-1	known	silent	c.385	p.L129	0.431	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	-	no_errors	CSPG4	HGNC	ENSG00000173546	14	0	0.00	5	6	54.55	-	-	-
DDX5	0	genome.wustl.edu	37	17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	62496266	62496266	G	-	DEL	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	347	0	0.00	180	58	23.48	-	-	-
DDX5	0	genome.wustl.edu	37	17	62496266	62496266	+	Frame_Shift_Del	DEL	G	G	-			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	17	62496266	62496266	G	-	DEL	DDX5	ENST00000225792	human	ensembl	69_37n	-1	known	frame_shift_del	c.1620	p.Y540fs	0.998	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_P68HR,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_RNA_helicase_DEAD_Q_motif	-	no_errors	DDX5	HGNC	ENSG00000108654	246	0	0.00	180	58	23.48	-	-	-
DEAF1	0	genome.wustl.edu	37	11	678769	678770	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	11	678769	678770	-	C	INS	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1180_1179	p.Y393fs	1.000:1.000	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	58	0	0.00	28	8	22.22	-	-	-
DEAF1	0	genome.wustl.edu	37	11	678769	678770	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	11	678769	678770	-	C	INS	DEAF1	ENST00000382409	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1180_1179	p.Y393fs	1.000:1.000	NULL	pfam_SAND_dom,pfam_Znf_MYND,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_Znf_MYND,pfscan_SAND_dom	-	no_errors	DEAF1	HGNC	ENSG00000177030	54	0	0.00	28	8	22.22	-	-	-
DOCK3	0	genome.wustl.edu	37	3	51417603	51417604	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	51417603	51417604	-	C	INS	DOCK3	ENST00000266037	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5548_5549	p.A1853fs	0.453:0.115	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	13	0	0.00	6	3	33.33	-	-	-
DOCK3	0	genome.wustl.edu	37	3	51417603	51417604	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	51417603	51417604	-	C	INS	DOCK3	ENST00000266037	human	ensembl	69_37n	+1	known	frame_shift_ins	c.5548_5549	p.A1853fs	0.453:0.115	NULL	pfam_DOCK,pfam_SH3_2,superfamily_SH3_domain,superfamily_ARM-type_fold,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	DOCK3	HGNC	ENSG00000088538	10	0	0.00	6	3	33.33	-	-	-
DSCAML1	0	genome.wustl.edu	37	11	117651408	117651408	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	11	117651408	117651408	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	39	0	0.00	9	6	40.00	-	-	-
DSCAML1	0	genome.wustl.edu	37	11	117651408	117651408	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	11	117651408	117651408	G	A	SNP	DSCAML1	ENST00000321322	human	ensembl	69_37n	-1	known	missense	c.344	p.A115V	1.000	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	DSCAML1	HGNC	ENSG00000177103	23	0	0.00	9	6	40.00	-	-	-
ENPEP	0	genome.wustl.edu	37	4	111469355	111469355	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	4	111469355	111469355	T	G	SNP	ENPEP	ENST00000265162	human	ensembl	69_37n	+1	known	missense	c.2024	p.V675G	0.000	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	ENPEP	HGNC	ENSG00000138792	22	0	0.00	20	5	20.00	-	-	-
ETAA1	0	genome.wustl.edu	37	2	67631500	67631500	+	Silent	SNP	T	T	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	67631500	67631500	T	C	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	+1	known	silent	c.1686	p.V562	0.000	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	158	0	0.00	93	39	29.55	-	-	-
ETAA1	0	genome.wustl.edu	37	2	67631500	67631500	+	Silent	SNP	T	T	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	2	67631500	67631500	T	C	SNP	ETAA1	ENST00000272342	human	ensembl	69_37n	+1	known	silent	c.1686	p.V562	0.000	NULL	NULL	-	no_errors	ETAA1	HGNC	ENSG00000143971	170	0	0.00	93	39	29.55	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40370471	40370471	+	Silent	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	19	40370471	40370471	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.12195	p.G4065	0.017	smart_Fol_N,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	8	0	0.00	2	4	66.67	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40383695	40383695	+	Silent	SNP	T	T	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	19	40383695	40383695	T	C	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.9915	p.G3305	0.000	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	27	0	0.00	12	4	25.00	-	-	-
HDAC11	0	genome.wustl.edu	37	3	13538267	13538268	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	13538267	13538268	-	C	INS	HDAC11	ENST00000295757	human	ensembl	69_37n	+1	known	frame_shift_ins	c.284_285	p.V98fs	1.000:1.000	pfam_His_deacetylse_dom	pfam_His_deacetylse_dom,prints_His_deacetylse	-	no_errors	HDAC11	HGNC	ENSG00000163517	32	0	0.00	17	2	10.53	-	-	-
HR	0	genome.wustl.edu	37	8	21984854	21984855	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	21984854	21984855	-	CT	INS	HR	ENST00000381418	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1101_1100	p.P368fs	0.000:0.001	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453	10	0	0.00	8	4	33.33	-	-	-
HR	0	genome.wustl.edu	37	8	21984854	21984855	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	8	21984854	21984855	-	CT	INS	HR	ENST00000381418	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1101_1100	p.P368fs	0.000:0.001	NULL	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom	-	no_errors	HR	HGNC	ENSG00000168453	41	0	0.00	8	4	33.33	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188277	152188277	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	1	152188277	152188277	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5828	p.S1943Y	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	73	0	0.00	34	9	20.93	-	-	-
HRNR	0	genome.wustl.edu	37	1	152188277	152188277	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	1	152188277	152188277	G	T	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	missense	c.5828	p.S1943Y	0.001	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	155	0	0.00	34	9	20.93	-	-	-
ILF3	0	genome.wustl.edu	37	19	10792682	10792683	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	19	10792682	10792683	-	C	INS	ILF3	ENST00000449870	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1194_1195	p.Q400fs	1.000:1.000	pfscan_Ds-RNA-bd	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	ILF3	HGNC	ENSG00000129351	23	0	0.00	7	3	30.00	-	-	-
KDM5C	0	genome.wustl.edu	37	X	53247017	53247017	+	Silent	SNP	A	A	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	53247017	53247017	A	C	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.483	p.V161	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	216	1	0.46	70	23	24.73	-	-	-
KDM5C	0	genome.wustl.edu	37	X	53247017	53247017	+	Silent	SNP	A	A	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	X	53247017	53247017	A	C	SNP	KDM5C	ENST00000375401	human	ensembl	69_37n	-1	known	silent	c.483	p.V161	1.000	pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	pfam_Lys_sp_deMease_like_dom,pfam_JmjC_dom,pfam_ARID/BRIGHT_DNA-bd,pfam_Znf_C5HC2,pfam_Znf_PHD-finger,pfam_TF_JmjN,superfamily_ARID/BRIGHT_DNA-bd,superfamily_Znf_FYVE_PHD,smart_TF_JmjN,smart_ARID/BRIGHT_DNA-bd,smart_Znf_PHD,smart_JmjC_dom,pfscan_TF_JmjN,pfscan_JmjC_dom,pfscan_Znf_PHD-finger,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	KDM5C	HGNC	ENSG00000126012	100	0	0.00	70	23	24.73	-	-	-
KIAA1598	0	genome.wustl.edu	37	10	118661341	118661342	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	10	118661341	118661342	-	G	INS	KIAA1598	ENST00000392903	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1608_1607	p.T537fs	0.988:0.994	NULL	superfamily_Adenylate_cyclase-assoc_CAP_N	-	no_errors	KIAA1598	HGNC	ENSG00000187164	47	0	0.00	26	4	13.33	-	-	-
KRT36	0	genome.wustl.edu	37	17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	39645738	39645738	C	A	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	nonsense	c.379	p.E127*	0.939	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	151	0	0.00	49	25	33.78	-	-	-
KRT36	0	genome.wustl.edu	37	17	39645738	39645738	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	17	39645738	39645738	C	A	SNP	KRT36	ENST00000328119	human	ensembl	69_37n	-1	known	nonsense	c.379	p.E127*	0.939	pfam_F	pfam_F,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	KRT36	HGNC	ENSG00000126337	114	0	0.00	49	25	33.78	-	-	-
NLE1	0	genome.wustl.edu	37	17	33463230	33463230	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	17	33463230	33463230	C	T	SNP	NLE1	ENST00000588019	human	ensembl	69_37n	-1	novel	missense	c.308	p.R103K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLE1	HGNC	ENSG00000073536	272	0	0.00	69	28	28.57	-	-	-
NLE1	0	genome.wustl.edu	37	17	33463230	33463230	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	17	33463230	33463230	C	T	SNP	NLE1	ENST00000588019	human	ensembl	69_37n	-1	novel	missense	c.308	p.R103K	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_Gprotein_B,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	NLE1	HGNC	ENSG00000073536	232	0	0.00	69	28	28.57	-	-	-
OSBPL8	0	genome.wustl.edu	37	12	76793679	76793679	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	12	76793679	76793679	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.442	p.V148I	1.000	pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	103	0	0.00	60	13	17.81	-	-	-
OSBPL8	0	genome.wustl.edu	37	12	76793679	76793679	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	12	76793679	76793679	C	T	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.442	p.V148I	1.000	pfscan_Pleckstrin_homology	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	107	0	0.00	60	13	17.81	-	-	-
PCDH11X	0	genome.wustl.edu	37	X	91873568	91873568	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	X	91873568	91873568	C	G	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	+1	known	missense	c.3673	p.L1225V	0.822	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	333	0	0.00	175	58	24.89	-	-	-
PCDH11X	0	genome.wustl.edu	37	X	91873568	91873568	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	X	91873568	91873568	C	G	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	+1	known	missense	c.3673	p.L1225V	0.822	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	375	1	0.26	175	58	24.89	-	-	-
PCDHAC2	0	genome.wustl.edu	37	5	140347311	140347312	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	5	140347311	140347312	-	G	INS	PCDHAC2	ENST00000289269	human	ensembl	69_37n	+1	known	frame_shift_ins	c.960_961	p.L322fs	0.611:0.832	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHAC2	HGNC	ENSG00000243232	43	0	0.00	23	3	11.54	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	139	0	0.00	60	38	38.78	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	113	1	0.87	60	38	38.78	-	-	-
PIPSL	0	genome.wustl.edu	37	10	95720929	95720929	+	RNA	SNP	C	C	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	10	95720929	95720929	C	A	SNP	PIPSL	ENST00000480546	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	PIPSL	HGNC	ENSG00000180764	312	0	0.00	114	16	12.31	-	-	-
PKD1L2	0	genome.wustl.edu	37	16	81155268	81155269	+	In_Frame_Ins	INS	-	-	TTG			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	16	81155268	81155269	-	TTG	INS	PKD1L2	ENST00000525539	human	ensembl	69_37n	-1	known	in_frame_ins	c.6534_6533	p.2179in_frame_insK	1.000:1.000	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PKD1L2	HGNC	ENSG00000166473	19	0	0.00	4	2	33.33	-	-	-
PRKAA1	0	genome.wustl.edu	37	5	40798188	40798189	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	5	40798188	40798189	-	C	INS	PRKAA1	ENST00000354209	human	ensembl	69_37n	-1	known	frame_shift_ins	c.104_103	p.V35fs	1.000:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKAA1	HGNC	ENSG00000132356	11	0	0.00	4	2	33.33	-	-	-
RAD54B	0	genome.wustl.edu	37	8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	8	95384609	95384609	G	T	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	nonsense	c.2522	p.S841*	0.992	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	73	0	0.00	48	22	31.43	-	-	-
RAD54B	0	genome.wustl.edu	37	8	95384609	95384609	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	8	95384609	95384609	G	T	SNP	RAD54B	ENST00000336148	human	ensembl	69_37n	-1	known	nonsense	c.2522	p.S841*	0.992	NULL	pfam_SNF2_N,pfam_Helicase_C,pfam_Helicase/UvrB_dom,pfam_HDA_complex_subunit-2/3,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54B	HGNC	ENSG00000197275	103	0	0.00	48	22	31.43	-	-	-
RGL2	0	genome.wustl.edu	37	6	33260312	33260312	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	6	33260312	33260312	G	C	SNP	RGL2	ENST00000497454	human	ensembl	69_37n	-1	known	missense	c.2017	p.Q673E	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441	120	0	0.00	32	10	23.81	-	-	-
RGL2	0	genome.wustl.edu	37	6	33260312	33260312	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	6	33260312	33260312	G	C	SNP	RGL2	ENST00000497454	human	ensembl	69_37n	-1	known	missense	c.2017	p.Q673E	1.000	pfam_Ras-assoc,smart_Ras-assoc,pfscan_Ras-assoc	pfam_RasGRF_CDC25,pfam_Ras-assoc,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_Ras-assoc,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RGL2	HGNC	ENSG00000237441	90	0	0.00	32	10	23.81	-	-	-
RPN1	0	genome.wustl.edu	37	3	128356884	128356884	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	3	128356884	128356884	C	T	SNP	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	missense	c.391	p.V131M	0.825	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	84	0	0.00	39	26	40.00	-	-	-
RPN1	0	genome.wustl.edu	37	3	128356884	128356884	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	3	128356884	128356884	C	T	SNP	RPN1	ENST00000296255	human	ensembl	69_37n	-1	known	missense	c.391	p.V131M	0.825	pfam_Ribophorin_I	pfam_Ribophorin_I	-	no_errors	RPN1	HGNC	ENSG00000163902	80	0	0.00	39	26	40.00	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36171704	36171705	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	21	36171704	36171705	-	TA	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.861_860	p.L288fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	139	0	0.00	39	30	43.48	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36171704	36171705	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	21	36171704	36171705	-	TA	INS	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	frame_shift_ins	c.861_860	p.L288fs	1.000:1.000	pirsf_TF_Runt-rel_RUNX	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	64	0	0.00	39	30	43.48	-	-	-
SPATC1	0	genome.wustl.edu	37	8	145095485	145095486	+	Frame_Shift_Ins	INS	-	-	C			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	8	145095485	145095486	-	C	INS	SPATC1	ENST00000377470	human	ensembl	69_37n	+1	known	frame_shift_ins	c.783_784	p.Q263fs	0.013:0.003	NULL	NULL	-	no_errors	SPATC1	HGNC	ENSG00000186583	21	0	0.00	13	2	13.33	-	-	-
TANC1	0	genome.wustl.edu	37	2	160031601	160031601	+	Silent	SNP	A	A	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	2	160031601	160031601	A	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	+1	known	silent	c.1641	p.Q547	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	384	0	0.00	80	28	25.69	-	-	-
TANC1	0	genome.wustl.edu	37	2	160031601	160031601	+	Silent	SNP	A	A	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	2	160031601	160031601	A	G	SNP	TANC1	ENST00000263635	human	ensembl	69_37n	+1	known	silent	c.1641	p.Q547	0.995	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_TPR_repeat,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	no_errors	TANC1	HGNC	ENSG00000115183	161	0	0.00	80	28	25.69	-	-	-
TESC	0	genome.wustl.edu	37	12	117494613	117494613	+	Silent	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	12	117494613	117494613	G	A	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	silent	c.366	p.N122	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	21	0	0.00	27	9	25.00	-	-	-
TESC	0	genome.wustl.edu	37	12	117494613	117494613	+	Silent	SNP	G	G	A			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	12	117494613	117494613	G	A	SNP	TESC	ENST00000392545	human	ensembl	69_37n	-1	known	silent	c.366	p.N122	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	TESC	HGNC	ENSG00000088992	20	0	0.00	27	9	25.00	-	-	-
TSC1	0	genome.wustl.edu	37	9	135797350	135797350	+	Silent	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	9	135797350	135797350	C	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.856	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	259	0	0.00	106	42	28.38	-	-	-
TSC1	0	genome.wustl.edu	37	9	135797350	135797350	+	Silent	SNP	C	C	T			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	9	135797350	135797350	C	T	SNP	TSC1	ENST00000298552	human	ensembl	69_37n	-1	known	silent	c.519	p.A173	0.856	pfam_Hamartin	pfam_Hamartin,superfamily_ARM-type_fold	-	no_errors	TSC1	HGNC	ENSG00000165699	143	0	0.00	106	42	28.38	-	-	-
ZFHX3	0	genome.wustl.edu	37	16	72821959	72821960	+	Frame_Shift_Ins	INS	-	-	G			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-10A-01W-A071-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	e989de90-43bc-4b32-ba64-95d595d3d57c	16	72821959	72821960	-	G	INS	ZFHX3	ENST00000268489	human	ensembl	69_37n	-1	known	frame_shift_ins	c.10216_10215	p.G3405fs	1.000:0.977	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,superfamily_Adenylate_cyclase-assoc_CAP_N,smart_Znf_C2H2-like,smart_Znf_U1,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ZFHX3	HGNC	ENSG00000140836	55	0	0.00	23	3	11.54	-	-	-
ZNF271	0	genome.wustl.edu	37	18	32888075	32888075	+	RNA	DEL	A	A	-			TCGA-BH-A0BM-01A-11W-A071-09	TCGA-BH-A0BM-11A-12W-A10F-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	800b3e93-7804-4773-bbc6-e8b3eff0912d	eb6628fe-e242-477d-8e3f-2963b0b6e760	18	32888075	32888075	A	-	DEL	ZNF271	ENST00000399070	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.019	-	-	-	no_errors	ZNF271	HGNC	ENSG00000257267	8	0	0.00	3	3	50.00	-	-	-
