Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CD40LG	0	genome.wustl.edu	37	X	135732438	135732438	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	135732438	135732438	G	A	SNP	CD40LG	ENST00000370629	human	ensembl	69_37n	+1	known	missense	c.170	p.R57K	0.999	pirsf_TNF_ligand_5	pfam_TNF,superfamily_Tumour_necrosis_fac-like,smart_TNF,pirsf_TNF_ligand_5,pfscan_TNF,prints_TNF_ligand_5	-	no_errors	CD40LG	HGNC	ENSG00000102245	134	0	0.00	139	76	35.35	-	-	-
CKAP2L	0	genome.wustl.edu	37	2	113509932	113509932	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	2	113509932	113509932	T	G	SNP	CKAP2L	ENST00000302450	human	ensembl	69_37n	-1	known	missense	c.1514	p.E505A	0.999	NULL	NULL	-	no_errors	CKAP2L	HGNC	ENSG00000169607	472	0	0.00	422	242	36.45	-	-	-
ENSG00000259288	0	genome.wustl.edu	37	15	40557142	40557142	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	15	40557142	40557142	C	T	SNP	ENSG00000259288	ENST00000558658	human	ensembl	69_37n	+1	known	missense	c.437	p.P146L	0.018	NULL	NULL	-	no_start_codon	RP11-133K1.2	Clone_based_vega_gene	ENSG00000259288	45	0	0.00	27	24	47.06	-	-	-
FBXW9	0	genome.wustl.edu	37	19	12802058	12802058	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	19	12802058	12802058	C	T	SNP	FBXW9	ENST00000380339	human	ensembl	69_37n	-1	known	missense	c.805	p.V269M	0.993	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	FBXW9	HGNC	ENSG00000132004	62	0	0.00	51	41	43.62	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	75	0	0	101	55	35.03	-	-	-
HLA-DQB1	0	genome.wustl.edu	37	6	32634373	32634373	+	Silent	SNP	C	C	T			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	32634373	32634373	C	T	SNP	HLA-DQB1	ENST00000374943	human	ensembl	69_37n	-1	known	silent	c.12	p.K4	0.001	NULL	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DQB1	HGNC	ENSG00000179344	32	0	0.00	49	10	16.95	-	-	-
PDCD6IP	0	genome.wustl.edu	37	3	33896710	33896711	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	3	33896710	33896711	AT	-	DEL	PDCD6IP	ENST00000457054	human	ensembl	69_37n	+1	known	frame_shift_del	c.2093_2094	p.I699fs	1.000:1.000	NULL	pfam_BRO1_dom,pfscan_BRO1_dom	-	no_errors	PDCD6IP	HGNC	ENSG00000170248	318	0	0.00	373	149	28.01	-	-	-
PPP1CC	0	genome.wustl.edu	37	12	111160057	111160057	+	Silent	SNP	A	A	G			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	12	111160057	111160057	A	G	SNP	PPP1CC	ENST00000340766	human	ensembl	69_37n	-1	known	silent	c.765	p.Y255	1.000	smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	pfam_Metallo_PEstase_dom,smart_Ser/Thr-sp_prot-phosphatase,prints_Ser/Thr-sp_prot-phosphatase	-	no_errors	PPP1CC	HGNC	ENSG00000186298	154	0	0.00	161	80	33.20	-	-	-
RAB5C	0	genome.wustl.edu	37	17	40280336	40280336	+	Silent	SNP	G	G	A			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	17	40280336	40280336	G	A	SNP	RAB5C	ENST00000346213	human	ensembl	69_37n	-1	known	silent	c.384	p.V128	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB5C	HGNC	ENSG00000108774	108	0	0.00	77	50	39.37	-	-	-
RNF6	0	genome.wustl.edu	37	13	26793710	26793710	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	13	26793710	26793710	T	C	SNP	RNF6	ENST00000346166	human	ensembl	69_37n	-1	known	missense	c.77	p.E26G	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING,pfscan_Znf_RING	-	no_errors	RNF6	HGNC	ENSG00000127870	304	0	0.00	302	191	38.74	-	-	-
RTN4IP1	0	genome.wustl.edu	37	6	107070840	107070840	+	Silent	SNP	A	A	G			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	107070840	107070840	A	G	SNP	RTN4IP1	ENST00000369063	human	ensembl	69_37n	-1	known	silent	c.279	p.G93	0.634	pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	pfam_ADH_C,pfam_ADH_GroES-like,superfamily_GroES-like,smart_PKS_ER	-	no_errors	RTN4IP1	HGNC	ENSG00000130347	97	0	0.00	102	66	39.29	-	-	-
SERPINA5	0	genome.wustl.edu	37	14	95058404	95058404	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	14	95058404	95058404	A	T	SNP	SERPINA5	ENST00000329597	human	ensembl	69_37n	+1	known	missense	c.1049	p.K350I	0.946	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINA5	HGNC	ENSG00000188488	62	0	0.00	56	26	31.71	-	-	-
TFAP2A	0	genome.wustl.edu	37	6	10398931	10398931	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	6	10398931	10398931	A	G	SNP	TFAP2A	ENST00000379604	human	ensembl	69_37n	-1	known	missense	c.1033	p.C345R	1.000	pfam_TF_AP2_C	pfam_TF_AP2_C,prints_TF_AP2_C,prints_TF_AP2_alpha_N	-	no_errors	TFAP2A	HGNC	ENSG00000137203	73	0	0.00	75	39	34.21	-	-	-
TMEM27	0	genome.wustl.edu	37	X	15682471	15682471	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0BS-01A-11D-A12Q-09	TCGA-BH-A0BS-11A-11D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	81e4b7a4-8d94-4d31-9c08-325ee04f5f36	fec92c99-b092-4b58-add7-e698e2e4161d	X	15682471	15682471	C	T	SNP	TMEM27	ENST00000380342	human	ensembl	69_37n	-1	known	missense	c.106	p.G36R	1.000	NULL	NULL	-	no_errors	TMEM27	HGNC	ENSG00000147003	339	0	0.00	293	171	36.85	-	-	-
