Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACACB	0	genome.wustl.edu	37	12	109617027	109617027	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	109617027	109617027	G	T	SNP	ACACB	ENST00000338432	human	ensembl	69_37n	+1	known	missense	c.1572	p.Q524H	1.000	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom	pfam_AcCoA_COase_cen,pfam_Carboxyl_trans,pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_COA_CT_N,pfscan_COA_CT_C,pfscan_Biotin_lipoyl	-	no_errors	ACACB	HGNC	ENSG00000076555	52	0	0.00	83	13	13.54	-	-	-
CAMTA2	0	genome.wustl.edu	37	17	4883016	4883016	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	17	4883016	4883016	G	C	SNP	CAMTA2	ENST00000414043	human	ensembl	69_37n	-1	known	missense	c.1670	p.T557S	0.266	pfam_IPT_TIG_rcpt,superfamily_Ig_E-set	pfam_CG-1_dom,pfam_IPT_TIG_rcpt,pfam_IQ_motif_EF-hand-BS,superfamily_Ig_E-set,superfamily_Ankyrin_rpt-contain_dom,pfscan_Ankyrin_rpt-contain_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CAMTA2	HGNC	ENSG00000108509	78	0	0.00	60	15	20.00	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862178	68862179	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	16	68862178	68862179	-	AT	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2266_2267	p.E757fs	1.000:1.000	pfam_Cadherin_cytoplasmic-dom	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	152	0	0.00	162	28	14.74	-	-	-
CNBD1	0	genome.wustl.edu	37	8	88365988	88365988	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	8	88365988	88365988	C	T	SNP	CNBD1	ENST00000521593	human	ensembl	69_37n	+1	putative	nonsense	c.187	p.Q63*	0.872	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CNBD1	HGNC	ENSG00000176571	136	0	0.00	107	21	16.41	-	-	-
ESPL1	0	genome.wustl.edu	37	12	53663662	53663662	+	Silent	SNP	C	C	A			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	53663662	53663662	C	A	SNP	ESPL1	ENST00000257934	human	ensembl	69_37n	+1	known	silent	c.936	p.A312	0.012	NULL	pfam_Peptidase_C50	-	no_errors	ESPL1	HGNC	ENSG00000135476	82	0	0.00	115	18	13.53	-	-	-
INTS4	0	genome.wustl.edu	37	11	77702264	77702265	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	11	77702264	77702265	-	T	INS	INTS4	ENST00000534064	human	ensembl	69_37n	-1	known	frame_shift_ins	c.136_135	p.A45fs	1.000:0.998	superfamily_ARM-type_fold	pfam_HEAT,superfamily_ARM-type_fold	-	no_errors	INTS4	HGNC	ENSG00000149262	329	0	0.00	320	47	12.81	-	-	-
KCNV2	0	genome.wustl.edu	37	9	2729502	2729503	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	9	2729502	2729503	-	T	INS	KCNV2	ENST00000382082	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1413_1414	p.A473fs	0.998:0.999	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_Ion_trans_dom,pfam_T1-type_BTB,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,prints_K_chnl,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv3	-	no_errors	KCNV2	HGNC	ENSG00000168263	141	0	0.00	137	16	10.46	-	-	-
KLHL6	0	genome.wustl.edu	37	3	183209733	183209733	+	Silent	SNP	G	G	A			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	183209733	183209733	G	A	SNP	KLHL6	ENST00000341319	human	ensembl	69_37n	-1	known	silent	c.1848	p.P616	0.005	NULL	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL6	HGNC	ENSG00000172578	16	0	0.00	38	7	15.56	-	-	-
LMO4	0	genome.wustl.edu	37	1	87805767	87805767	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	1	87805767	87805767	C	T	SNP	LMO4	ENST00000370542	human	ensembl	69_37n	+1	known	missense	c.371	p.P124L	1.000	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LMO4	HGNC	ENSG00000143013	293	0	0.00	184	71	27.84	-	-	-
PTEN	0	genome.wustl.edu	37	10	89685316	89685316	+	Splice_Site	DEL	T	T	-			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	10	89685316	89685316	T	-	DEL	PTEN	ENST00000371953	human	ensembl	69_37n	+1	known	splice_site_del	c.209+2	e3+2	1.000	-	-	-	no_errors	PTEN	HGNC	ENSG00000171862	133	0	0.00	71	26	26.26	-	-	-
RBM5	0	genome.wustl.edu	37	3	50151449	50151449	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	50151449	50151449	T	-	DEL	RBM5	ENST00000347869	human	ensembl	69_37n	+1	known	frame_shift_del	c.1684	p.Q563fs	1.000	NULL	pfam_G_patch_dom,pfam_RRM_dom,pfam_Znf_RanBP2,smart_RRM_dom,smart_Znf_RanBP2,smart_G_patch_dom,pfscan_Znf_RanBP2,pfscan_Znf_C2H2,pfscan_G_patch_dom,pfscan_RRM_dom	-	no_errors	RBM5	HGNC	ENSG00000003756	81	0	0.00	72	19	20.65	-	-	-
ZNF595	0	genome.wustl.edu	37	4	86243	86243	+	RNA	SNP	C	C	A			TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	4	86243	86243	C	A	SNP	ZNF595	ENST00000339368	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.667	-	-	-	no_errors	ZNF595	HGNC	ENSG00000197701	35	0	0.00	35	7	16.67	-	-	-
