Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ATRN	0	genome.wustl.edu	37	20	3559378	3559378	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	3559378	3559378	G	C	SNP	ATRN	ENST00000262919	human	ensembl	69_37n	+1	known	missense	c.2503	p.V835L	1.000	superfamily_C-type_lectin_fold,smart_C-type_lectin,pfscan_C-type_lectin	pfam_Kelch_1,pfam_Plexin_repeat,pfam_CUB,superfamily_C-type_lectin_fold,superfamily_CUB,superfamily_Plexin-like_fold,smart_EGF-like,smart_CUB,smart_Plexin-like,smart_C-type_lectin,smart_EGF_laminin,pfscan_CUB,pfscan_EG-like_dom,pfscan_EGF_laminin,pfscan_C-type_lectin	-	no_errors	ATRN	HGNC	ENSG00000088812	118	0	0.00	160	32	16.67	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950880	16950880	+	RNA	SNP	T	T	C			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	1	16950880	16950880	T	C	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.238	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	9	0	0.00	37	8	17.78	-	-	-
FAM111B	0	genome.wustl.edu	37	11	58892377	58892377	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	58892377	58892377	A	-	DEL	FAM111B	ENST00000343597	human	ensembl	69_37n	+1	known	frame_shift_del	c.807	p.K272fs	0.000	NULL	superfamily_Pept_cys/ser_Trypsin-like	-	no_errors	FAM111B	HGNC	ENSG00000189057	52	0	0.00	16	3	15.00	-	-	-
FAM75D5	0	genome.wustl.edu	37	9	84530475	84530475	+	RNA	SNP	C	C	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	9	84530475	84530475	C	T	SNP	FAM75D5	ENST00000527857	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	FAM75D5	HGNC	ENSG00000240632	359	0	0.00	271	150	35.63	-	-	-
FLII	0	genome.wustl.edu	37	17	18157896	18157896	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	18157896	18157896	G	A	SNP	FLII	ENST00000327031	human	ensembl	69_37n	-1	known	missense	c.514	p.R172C	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Gelsolin_dom,pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Gelsolin,prints_Gelsolin	-	no_errors	FLII	HGNC	ENSG00000177731	44	0	0.00	20	16	44.44	-	-	-
KLHL4	0	genome.wustl.edu	37	X	86887332	86887332	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	86887332	86887332	G	A	SNP	KLHL4	ENST00000373114	human	ensembl	69_37n	+1	known	missense	c.1447	p.G483R	1.000	pfam_Kelch_1,pfam_Kelch_2,smart_Kelch_1	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pfscan_BTB/POZ-like	-	no_errors	KLHL4	HGNC	ENSG00000102271	244	0	0.00	211	89	29.57	-	-	-
LINGO2	0	genome.wustl.edu	37	9	27950338	27950338	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	9	27950338	27950338	C	T	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	missense	c.332	p.R111H	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	151	0	0.00	119	55	31.61	-	-	-
MAGEE2	0	genome.wustl.edu	37	X	75004148	75004148	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	X	75004148	75004148	G	A	SNP	MAGEE2	ENST00000373359	human	ensembl	69_37n	-1	known	missense	c.739	p.L247F	0.018	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEE2	HGNC	ENSG00000186675	69	0	0.00	87	27	23.68	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12011150	12011150	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	17	12011150	12011150	A	G	SNP	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	missense	c.590	p.D197G	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	322	0	0.00	85	80	48.48	-	-	-
PLCG1	0	genome.wustl.edu	37	20	39802876	39802876	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	20	39802876	39802876	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	+1	known	missense	c.3758	p.R1253H	1.000	pirsf_PLC-gamma	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	35	0	0.00	53	24	30.77	-	-	-
SCFD1	0	genome.wustl.edu	37	14	31118737	31118737	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	31118737	31118737	C	T	SNP	SCFD1	ENST00000458591	human	ensembl	69_37n	+1	known	missense	c.617	p.A206V	1.000	pfam_Sec1-like,superfamily_Sec1-like	pfam_Sec1-like,superfamily_Sec1-like	-	no_errors	SCFD1	HGNC	ENSG00000092108	131	0	0.00	67	28	29.47	-	-	-
SERPINA9	0	genome.wustl.edu	37	14	94933670	94933670	+	Silent	SNP	T	T	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	94933670	94933670	T	A	SNP	SERPINA9	ENST00000337425	human	ensembl	69_37n	-1	known	silent	c.732	p.P244	0.014	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom,prints_Prot_inh_Lserp2	-	no_errors	SERPINA9	HGNC	ENSG00000170054	98	0	0.00	67	31	31.63	-	-	-
SF3B2	0	genome.wustl.edu	37	11	65819873	65819873	+	Silent	SNP	C	C	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	65819873	65819873	C	T	SNP	SF3B2	ENST00000322535	human	ensembl	69_37n	+1	known	silent	c.18	p.P6	0.294	NULL	pfam_DUF382,pfam_PSP,pfam_SAP_DNA-bd,smart_SAP_DNA-bd,smart_PSP,pfscan_SAP_DNA-bd	-	no_errors	SF3B2	HGNC	ENSG00000087365	22	0	0.00	21	13	37.14	-	-	-
SIGLEC15	0	genome.wustl.edu	37	18	43422104	43422104	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	18	43422104	43422104	G	T	SNP	SIGLEC15	ENST00000389474	human	ensembl	69_37n	+1	known	missense	c.939	p.L313F	0.960	NULL	pfam_Ig_V-set,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SIGLEC15	HGNC	ENSG00000197046	81	0	0.00	67	36	34.95	-	-	-
SIRT3	0	genome.wustl.edu	37	11	224173	224173	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	224173	224173	C	A	SNP	SIRT3	ENST00000382743	human	ensembl	69_37n	-1	known	missense	c.874	p.V292L	1.000	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	pfam_NAD-dep_deAcase_sirtuin,pirsf_NAD-dep_deAcase_SIR2_euk,pfscan_NAD-dep_deAcase_sirtuin	-	no_errors	SIRT3	HGNC	ENSG00000142082	42	0	0.00	51	19	27.14	-	-	-
SNAPC1	0	genome.wustl.edu	37	14	62229257	62229257	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	14	62229257	62229257	G	A	SNP	SNAPC1	ENST00000216294	human	ensembl	69_37n	+1	known	missense	c.79	p.E27K	1.000	pfam_SNAPc_SNAP43	pfam_SNAPc_SNAP43	-	no_errors	SNAPC1	HGNC	ENSG00000023608	79	0	0.00	82	31	27.43	-	-	-
TNFRSF10A	0	genome.wustl.edu	37	8	23049438	23049439	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	8	23049438	23049439	-	T	INS	TNFRSF10A	ENST00000221132	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1176_1175	p.N392fs	0.505:0.425	pirsf_TNFR_10,pfam_Death,superfamily_DEATH-like,smart_Death,pfscan_Death	pirsf_TNFR_10,pfam_Death,pfam_TNFR/NGFR_Cys_rich_reg,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_10,pfscan_Death,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10A	HGNC	ENSG00000104689	151	0	0.00	55	50	47.62	-	-	-
ZNF143	0	genome.wustl.edu	37	11	9494303	9494303	+	Silent	SNP	A	A	G			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	11	9494303	9494303	A	G	SNP	ZNF143	ENST00000396602	human	ensembl	69_37n	+1	known	silent	c.192	p.Q64	0.759	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF143	HGNC	ENSG00000166478	128	0	0.00	124	24	16.22	-	-	-
ZNF300P1	0	genome.wustl.edu	37	5	150321847	150321847	+	RNA	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	5	150321847	150321847	G	A	SNP	ZNF300P1	ENST00000520773	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.794	-	-	-	no_errors	ZNF300P1	HGNC	ENSG00000197083	71	0	0.00	57	30	34.48	-	-	-
ZNF496	0	genome.wustl.edu	37	1	247473058	247473058	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0EI-01A-11D-A10Y-09	TCGA-BH-A0EI-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ee8e93e0-d08c-400e-8ed7-ae56d7aefbec	0fb7e29d-006a-4f20-b0d8-77f941c16eaa	1	247473058	247473058	G	A	SNP	ZNF496	ENST00000366498	human	ensembl	69_37n	-1	known	missense	c.943	p.R315C	0.001	pfscan_Krueppel-associated_box	pfam_Tscrpt_reg_SCAN,pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Retrov_capsid_C,superfamily_Krueppel-associated_box,smart_Tscrpt_reg_SCAN,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box,pfscan_Tscrpt_reg_SCAN	-	no_errors	ZNF496	HGNC	ENSG00000162714	92	0	0.00	84	15	15.15	-	-	-
