Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C17orf102	0	genome.wustl.edu	37	17	32906191	32906191	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	32906191	32906191	C	T	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	missense	c.109	p.D37N	0.231	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	29	0	0.00	19	6	24.00	-	-	-
C17orf102	0	genome.wustl.edu	37	17	32906192	32906192	+	Silent	SNP	T	T	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	32906192	32906192	T	A	SNP	C17orf102	ENST00000357754	human	ensembl	69_37n	-1	known	silent	c.108	p.V36	0.001	NULL	NULL	-	no_errors	C17orf102	HGNC	ENSG00000197322	28	0	0.00	19	6	23.08	-	-	-
CARD11	0	genome.wustl.edu	37	7	2987388	2987388	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	2987388	2987388	G	A	SNP	CARD11	ENST00000396946	human	ensembl	69_37n	-1	known	missense	c.41	p.T14M	0.982	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD	-	no_errors	CARD11	HGNC	ENSG00000198286	125	0	0.00	136	22	13.92	-	-	-
CHRM4	0	genome.wustl.edu	37	11	46406905	46406905	+	Silent	SNP	C	C	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	46406905	46406905	C	T	SNP	CHRM4	ENST00000433765	human	ensembl	69_37n	-1	known	silent	c.1203	p.T401	1.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Musac_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Musac_M4_rcpt	-	no_errors	CHRM4	HGNC	ENSG00000180720	93	0	0.00	92	19	17.12	-	-	-
CYGB	0	genome.wustl.edu	37	17	74527737	74527737	+	Silent	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	74527737	74527737	G	A	SNP	CYGB	ENST00000293230	human	ensembl	69_37n	-1	known	silent	c.180	p.F60	1.000	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	pfam_Globin,superfamily_Globin-like,pfscan_Globin,prints_Globin_lamprey/hagfish,prints_Myoglobin	-	no_errors	CYGB	HGNC	ENSG00000161544	68	0	0.00	115	23	16.67	-	-	-
ENSG00000247570	0	genome.wustl.edu	37	8	70856514	70856514	+	Splice_Site	DEL	T	T	-			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	8	70856514	70856514	T	-	DEL	ENSG00000247570	ENST00000424643	human	ensembl	69_37n	+1	known	splice_site_del	c.NULL	NULL	0.228	-	-	-	no_coding_region:pseudogene	RP11-449M6.1	Clone_based_vega_gene	ENSG00000247570	12	0	0.00	34	5	12.20	-	-	-
FAM117B	0	genome.wustl.edu	37	2	203591033	203591036	+	Frame_Shift_Del	DEL	AAAG	AAAG	-			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	AAAG	AAAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	2	203591033	203591036	AAAG	-	DEL	FAM117B	ENST00000392238	human	ensembl	69_37n	+1	known	frame_shift_del	c.907_910	p.E304fs	1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors	FAM117B	HGNC	ENSG00000138439	85	0	0.00	117	13	10.00	-	-	-
FAM53C	0	genome.wustl.edu	37	5	137681156	137681162	+	Frame_Shift_Del	DEL	GGCGACC	GGCGACC	-			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GGCGACC	GGCGACC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	5	137681156	137681162	GGCGACC	-	DEL	FAM53C	ENST00000239906	human	ensembl	69_37n	+1	known	frame_shift_del	c.779_785	p.W260fs	1.000:1.000:1.000:1.000:1.000:1.000:0.793	NULL	NULL	-	no_errors	FAM53C	HGNC	ENSG00000120709	39	0	0.00	48	11	18.64	-	-	-
HELB	0	genome.wustl.edu	37	12	66717817	66717817	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	12	66717817	66717817	G	T	SNP	HELB	ENST00000247815	human	ensembl	69_37n	+1	known	missense	c.2352	p.R784S	0.991	NULL	NULL	-	no_errors	HELB	HGNC	ENSG00000127311	90	0	0.00	154	26	14.36	-	-	-
ITPR3	0	genome.wustl.edu	37	6	33655053	33655053	+	Silent	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	6	33655053	33655053	G	A	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	+1	known	silent	c.6126	p.S2042	0.003	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	62	0	0.00	59	12	16.90	-	-	-
MUC6	0	genome.wustl.edu	37	11	1019367	1019368	+	Frame_Shift_Del	DEL	GC	GC	-			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	GC	GC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	11	1019367	1019368	GC	-	DEL	MUC6	ENST00000421673	human	ensembl	69_37n	-1	known	frame_shift_del	c.3938_3937	p.A1313fs	0.002:0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_Cys_knot_C,pfscan_Cys_knot_C	-	no_errors	MUC6	HGNC	ENSG00000184956	293	0	0.00	277	35	11.11	-	-	-
PCNX	0	genome.wustl.edu	37	14	71543011	71543011	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	14	71543011	71543011	G	A	SNP	PCNX	ENST00000304743	human	ensembl	69_37n	+1	known	missense	c.5212	p.V1738M	1.000	NULL	pfam_Pecanex	-	no_errors	PCNX	HGNC	ENSG00000100731	88	0	0.00	88	17	16.19	-	-	-
POLR3C	0	genome.wustl.edu	37	1	145608467	145608467	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	145608467	145608467	C	T	SNP	POLR3C	ENST00000334163	human	ensembl	69_37n	-1	known	missense	c.340	p.G114S	1.000	NULL	pfam_RNA_pol_III_Rpc82_C,pfam_RNA_pol_III_RPC82-rel_HTH	-	no_errors	POLR3C	HGNC	ENSG00000186141	89	0	0.00	133	22	14.19	-	-	-
SEMA3E	0	genome.wustl.edu	37	7	82997122	82997122	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	7	82997122	82997122	G	A	SNP	SEMA3E	ENST00000307792	human	ensembl	69_37n	-1	known	missense	c.2108	p.S703L	0.044	NULL	pfam_Semaphorin/CD100_Ag,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3E	HGNC	ENSG00000170381	73	0	0.00	75	11	12.79	-	-	-
SPATA18	0	genome.wustl.edu	37	4	52946023	52946023	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	4	52946023	52946023	G	C	SNP	SPATA18	ENST00000295213	human	ensembl	69_37n	+1	known	missense	c.1293	p.Q431H	1.000	NULL	NULL	-	no_errors	SPATA18	HGNC	ENSG00000163071	69	0	0.00	114	15	11.54	-	-	-
ST18	0	genome.wustl.edu	37	8	53038615	53038615	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	8	53038615	53038615	C	T	SNP	ST18	ENST00000276480	human	ensembl	69_37n	-1	known	missense	c.2752	p.G918R	0.993	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	ST18	HGNC	ENSG00000147488	92	0	0.00	172	36	17.31	-	-	-
TFDP1	0	genome.wustl.edu	37	13	114292199	114292199	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	13	114292199	114292199	G	T	SNP	TFDP1	ENST00000375370	human	ensembl	69_37n	+1	known	missense	c.1073	p.R358M	1.000	pirsf_Transcription_factor_DP_subgr	pfam_Transc_factor_DP_C,pfam_E2F_TDP,pirsf_Transcription_factor_DP_subgr	-	no_errors	TFDP1	HGNC	ENSG00000198176	102	0	0.00	89	11	11.00	-	-	-
TP53	0	genome.wustl.edu	37	17	7574003	7574003	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	17	7574003	7574003	G	A	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	nonsense	c.1024	p.R342*	0.307	pfam_p53_tetrameristn,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	35	0	0.00	45	8	15.09	-	-	-
VANGL2	0	genome.wustl.edu	37	1	160389104	160389104	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0RX-01A-21D-A099-09	TCGA-BH-A0RX-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	48115e9a-5027-455a-a88e-c3d991dbf966	c99e4cec-5fc3-4dc9-9c38-b72dbea39d3f	1	160389104	160389104	C	T	SNP	VANGL2	ENST00000368061	human	ensembl	69_37n	+1	known	missense	c.505	p.R169C	1.000	pfam_Strabismus,pirsf_Strabismus	pfam_Strabismus,pirsf_Strabismus	-	no_errors	VANGL2	HGNC	ENSG00000162738	78	0	0.00	93	19	16.96	-	-	-
