Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADH7	0	genome.wustl.edu	37	4	100340221	100340221	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	4	100340221	100340221	G	A	SNP	ADH7	ENST00000209665	human	ensembl	69_37n	-1	known	missense	c.919	p.P307S	0.868	pfam_ADH_C	pfam_ADH_GroES-like,pfam_ADH_C,superfamily_GroES-like	-	no_errors	ADH7	HGNC	ENSG00000196344	156	1	0.63	104	31	22.79	-	-	-
CDCP1	0	genome.wustl.edu	37	3	45127233	45127234	+	Frame_Shift_Del	DEL	CT	CT	-			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	3	45127233	45127234	CT	-	DEL	CDCP1	ENST00000296129	human	ensembl	69_37n	-1	known	frame_shift_del	c.2408_2407	p.S803fs	0.001:0.000	NULL	superfamily_CUB	-	no_errors	CDCP1	HGNC	ENSG00000163814	244	1	0.40	234	49	17.19	-	-	-
ENOX1	0	genome.wustl.edu	37	13	43930084	43930084	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	13	43930084	43930084	T	C	SNP	ENOX1	ENST00000261488	human	ensembl	69_37n	-1	known	missense	c.794	p.E265G	1.000	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	ENOX1	HGNC	ENSG00000120658	40	0	0.00	33	7	17.50	-	-	-
FAM123B	0	genome.wustl.edu	37	X	63411027	63411027	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	X	63411027	63411027	G	C	SNP	FAM123B	ENST00000330258	human	ensembl	69_37n	-1	known	missense	c.2140	p.Q714E	0.999	NULL	pfam_Uncharacterised_FAM123	-	no_errors	FAM123B	HGNC	ENSG00000184675	109	0	0.00	75	20	21.05	-	-	-
FAM86B1	0	genome.wustl.edu	37	8	12040906	12040906	+	RNA	DEL	C	C	-			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	8	12040906	12040906	C	-	DEL	FAM86B1	ENST00000524484	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	FAM86B1	HGNC	ENSG00000186523	8	0	0.00	4	2	33.33	-	-	-
FBLN2	0	genome.wustl.edu	37	3	13671349	13671349	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	3	13671349	13671349	C	T	SNP	FBLN2	ENST00000404922	human	ensembl	69_37n	+1	known	missense	c.2872	p.R958C	1.000	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_Anaphylatoxin/fibulin,superfamily_Anaphylatoxin_,smart_EGF-like,smart_Anaphylatoxin/fibulin,smart_EGF-like_Ca-bd,pfscan_Anaphylatoxin/fibulin,pfscan_EG-like_dom	-	no_errors	FBLN2	HGNC	ENSG00000163520	27	0	0.00	34	5	12.82	-	-	-
GLI2	0	genome.wustl.edu	37	2	121747788	121747788	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	2	121747788	121747788	C	T	SNP	GLI2	ENST00000361492	human	ensembl	69_37n	+1	known	missense	c.4298	p.P1433L	0.001	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	GLI2	HGNC	ENSG00000074047	37	0	0.00	20	5	19.23	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56178571	56178571	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	5	56178571	56178571	G	T	SNP	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	nonsense	c.3544	p.E1182*	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	124	0	0.00	148	19	11.38	-	-	-
OR2T27	0	genome.wustl.edu	37	1	248813454	248813454	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	1	248813454	248813454	G	T	SNP	OR2T27	ENST00000344889	human	ensembl	69_37n	-1	known	missense	c.732	p.H244Q	0.451	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR2T27	HGNC	ENSG00000187701	131	0	0.00	151	21	12.21	-	-	-
PGBD5	0	genome.wustl.edu	37	1	230492718	230492718	+	Silent	SNP	G	G	A			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	1	230492718	230492718	G	A	SNP	PGBD5	ENST00000321327	human	ensembl	69_37n	-1	known	silent	c.771	p.H257	0.361	NULL	NULL	-	no_errors	PGBD5	HGNC	ENSG00000177614	91	0	0.00	91	12	11.65	-	-	-
RAPGEF6	0	genome.wustl.edu	37	5	130970657	130970657	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	5	130970657	130970657	C	T	SNP	RAPGEF6	ENST00000509018	human	ensembl	69_37n	-1	known	missense	c.67	p.E23K	0.982	superfamily_cNMP-bd-like	pfam_RasGRF_CDC25,pfam_PDZ,pfam_Ras-assoc,pfam_cNMP-bd_dom,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,superfamily_PDZ,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,smart_Ras-like_Gua-exchang_fac_N,smart_PDZ,smart_Ras-assoc,smart_RasGRF_CDC25,pfscan_cNMP-bd_dom,pfscan_PDZ,pfscan_Ras-assoc,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RAPGEF6	HGNC	ENSG00000158987	105	0	0.00	87	16	15.53	-	-	-
TCEAL3	0	genome.wustl.edu	37	X	102864406	102864408	+	In_Frame_Del	DEL	GAT	GAT	-			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	GAT	GAT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	X	102864406	102864408	GAT	-	DEL	TCEAL3	ENST00000243286	human	ensembl	69_37n	+1	known	in_frame_del	c.414_416	p.M140in_frame_del	0.998:0.991:0.986	pfam_TF_A-like/BEX-like	pfam_TF_A-like/BEX-like	-	no_errors	TCEAL3	HGNC	ENSG00000196507	1203	9	0.74	953	172	15.29	-	-	-
VWF	0	genome.wustl.edu	37	12	6091157	6091157	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18M-01A-11D-A12B-09	TCGA-BH-A18M-11A-33D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	0e548c1e-cbb7-4432-8112-bb262a1ef9d9	24bf6da8-6015-4a98-affd-0a172d7d3265	12	6091157	6091157	G	A	SNP	VWF	ENST00000261405	human	ensembl	69_37n	-1	known	missense	c.7082	p.A2361V	1.000	pirsf_VWF	pirsf_VWF,pfam_VWF_type-D,pfam_VWF_A,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_VWF_A,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_A,pfscan_VWF_C	-	no_errors	VWF	HGNC	ENSG00000110799	61	0	0.00	46	11	19.30	-	-	-
