Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ASB10	0	genome.wustl.edu	37	7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	41	0	0.00	34	5	12.82	-	-	-
C17orf49	0	genome.wustl.edu	37	17	6920583	6920583	+	Silent	SNP	G	G	A			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	17	6920583	6920583	G	A	SNP	C17orf49	ENST00000546495	human	ensembl	69_37n	+1	known	silent	c.522	p.L174	1.000	NULL	superfamily_Homeodomain-like	-	no_errors	C17orf49	Clone_based_vega_gene	ENSG00000258315	385	0	0.00	169	65	27.66	-	-	-
CDS1	0	genome.wustl.edu	37	4	85530598	85530598	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	4	85530598	85530598	A	G	SNP	CDS1	ENST00000295887	human	ensembl	69_37n	+1	known	missense	c.262	p.I88V	1.000	pfam_PC_trans,pirsf_PC_Trfase_euk	pfam_PC_trans,pirsf_PC_Trfase_euk	-	no_errors	CDS1	HGNC	ENSG00000163624	619	0	0.00	347	250	41.88	-	-	-
COTL1	0	genome.wustl.edu	37	16	84600388	84600388	+	RNA	SNP	G	G	A			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	16	84600388	84600388	G	A	SNP	COTL1	ENST00000567278	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	COTL1	HGNC	ENSG00000103187	74	0	0.00	64	14	17.95	-	-	-
CRNKL1	0	genome.wustl.edu	37	20	20023120	20023120	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	20	20023120	20023120	C	T	SNP	CRNKL1	ENST00000377340	human	ensembl	69_37n	-1	known	missense	c.1496	p.R499H	1.000	NULL	pfam_HAT,pfam_Suf,smart_HAT,pfscan_TPR-contain_dom	-	no_errors	CRNKL1	HGNC	ENSG00000101343	203	0	0.00	188	25	11.68	-	-	-
FDFT1	0	genome.wustl.edu	37	8	11679310	11679310	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	8	11679310	11679310	G	A	SNP	FDFT1	ENST00000220584	human	ensembl	69_37n	+1	known	missense	c.433	p.D145N	1.000	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	pfam_Squ/phyt_synthse,superfamily_Terpenoid_synth,tigrfam_Squal_synth	-	no_errors	FDFT1	HGNC	ENSG00000079459	472	0	0.00	254	44	14.72	-	-	-
GPR144	0	genome.wustl.edu	37	9	127230042	127230042	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	9	127230042	127230042	G	T	SNP	GPR144	ENST00000334810	human	ensembl	69_37n	+1	known	missense	c.1990	p.V664L	0.962	pfam_GPCR_2_secretin-like,prints_GPCR_2_secretin-like,pfscan_GPCR_2-like	pfam_GPCR_2_secretin-like,pfam_Pentaxin,pfam_GPS_dom,superfamily_ConA-like_lec_gl,superfamily_C-type_lectin_fold,smart_Pentaxin,smart_GPS_dom,prints_Pentaxin,prints_GPCR_2_secretin-like,pfscan_GPS_dom,pfscan_GPCR_2-like	-	no_errors	GPR144	HGNC	ENSG00000180264	145	0	0.00	73	14	16.09	-	-	-
IGSF3	0	genome.wustl.edu	37	1	117127361	117127361	+	Nonsense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	117127361	117127361	G	T	SNP	IGSF3	ENST00000318837	human	ensembl	69_37n	-1	known	nonsense	c.2814	p.C938*	1.000	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	-	no_errors	IGSF3	HGNC	ENSG00000143061	51	0	0.00	39	14	26.42	-	-	-
IQCH	0	genome.wustl.edu	37	15	67664804	67664804	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	15	67664804	67664804	C	T	SNP	IQCH	ENST00000335894	human	ensembl	69_37n	+1	known	missense	c.1109	p.S370L	0.000	pfscan_IQ_motif_EF-hand-BS	pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCH	HGNC	ENSG00000103599	61	0	0.00	44	15	24.19	-	-	-
MAPKAP1	0	genome.wustl.edu	37	9	128347966	128347966	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	9	128347966	128347966	T	C	SNP	MAPKAP1	ENST00000265960	human	ensembl	69_37n	-1	known	missense	c.539	p.Y180C	1.000	pfam_SIN1	pfam_SIN1	-	no_errors	MAPKAP1	HGNC	ENSG00000119487	124	0	0.00	63	11	14.67	-	-	-
MAST1	0	genome.wustl.edu	37	19	12976829	12976829	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	19	12976829	12976829	C	T	SNP	MAST1	ENST00000251472	human	ensembl	69_37n	+1	known	nonsense	c.1942	p.R648*	0.595	superfamily_Kinase-like_dom	pfam_MA_Ser/Thr_Kinase_dom,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_PDZ,superfamily_Kinase-like_dom,superfamily_MAST_pre-PK_dom,superfamily_PDZ,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_PDZ,pfscan_PDZ,pfscan_Prot_kinase_cat_dom	-	no_errors	MAST1	HGNC	ENSG00000105613	122	0	0.00	81	13	13.83	-	-	-
MLL3	0	genome.wustl.edu	37	7	151859912	151859912	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	7	151859912	151859912	C	T	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	missense	c.10750	p.G3584R	0.963	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	226	0	0.00	163	49	23.11	-	-	-
NASP	0	genome.wustl.edu	37	1	46073222	46073222	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	46073222	46073222	A	-	DEL	NASP	ENST00000402363	human	ensembl	69_37n	+1	known	frame_shift_del	c.645	p.G217fs	0.076	NULL	pfam_Tetratricopeptide_SHNi-TPR_dom,pfam_TPR-1,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	NASP	HGNC	ENSG00000132780	77	0	0.00	61	34	35.79	-	-	-
PLA2G4E	0	genome.wustl.edu	37	15	42292345	42292345	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	15	42292345	42292345	G	T	SNP	PLA2G4E	ENST00000413860	human	ensembl	69_37n	-1	known	missense	c.722	p.S241Y	0.978	NULL	pfam_LysoPLipase_cat_dom,pfam_C2_Ca-dep,superfamily_Acyl_Trfase/lysoPLipase,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_LysoPLipase_cat_dom,pfscan_C2_membr_targeting,pfscan_LysoPLipase_cat_dom	-	no_errors	PLA2G4E	HGNC	ENSG00000188089	202	0	0.00	119	25	17.36	-	-	-
PRAMEF7	0	genome.wustl.edu	37	1	12980075	12980075	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	1	12980075	12980075	G	T	SNP	PRAMEF7	ENST00000330881	human	ensembl	69_37n	+1	known	missense	c.1267	p.A423S	0.000	NULL	NULL	-	no_errors	PRAMEF7	HGNC	ENSG00000204510	135	0	0.00	80	68	45.95	-	-	-
TM9SF2	0	genome.wustl.edu	37	13	100190011	100190011	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	13	100190011	100190011	G	C	SNP	TM9SF2	ENST00000376387	human	ensembl	69_37n	+1	known	missense	c.610	p.D204H	1.000	pfam_EMP70	pfam_EMP70	-	no_errors	TM9SF2	HGNC	ENSG00000125304	170	0	0.00	169	31	15.50	-	-	-
VDAC2	0	genome.wustl.edu	37	10	76979101	76979101	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	10	76979101	76979101	T	A	SNP	VDAC2	ENST00000313132	human	ensembl	69_37n	+1	known	missense	c.388	p.S130T	1.000	pfam_Porin_Euk	pfam_Porin_Euk,prints_Porin_Euk	-	no_errors	VDAC2	HGNC	ENSG00000165637	212	0	0.00	120	40	25.00	-	-	-
ZC3H13	0	genome.wustl.edu	37	13	46616352	46616352	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1ES-01A-11D-A135-09	TCGA-BH-A1ES-11A-33D-A135-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7ecda44b-e942-4077-9d18-2a844ec53c9d	b281f983-29fc-4389-bea2-cabf4c90b3df	13	46616352	46616352	C	A	SNP	ZC3H13	ENST00000242848	human	ensembl	69_37n	-1	known	missense	c.286	p.V96L	1.000	NULL	pfam_Znf_CCCH,smart_Znf_CCCH	-	no_errors	ZC3H13	HGNC	ENSG00000123200	309	0	0.00	341	123	26.51	-	-	-
