Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADNP	0	genome.wustl.edu	37	20	49509507	49509508	+	Frame_Shift_Ins	INS	-	-	GTAA			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	20	49509507	49509508	-	GTAA	INS	ADNP	ENST00000349014	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1744_1743	p.H581fs	1.000:0.989	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Homeodomain,pfscan_Znf_C2H2	-	no_errors	ADNP	HGNC	ENSG00000101126	83	0	0.00	49	20	28.99	-	-	-
ASIC1	0	genome.wustl.edu	37	12	50474963	50474964	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	12	50474963	50474964	-	T	INS	ASIC1	ENST00000228468	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1514_1515	p.E505fs	1.000:1.000	NULL	pfam_Na+channel_ASC,prints_Na+channel_ASC	-	no_errors	ASIC1	HGNC	ENSG00000110881	12	0	0.00	5	2	28.57	-	-	-
BCL9L	0	genome.wustl.edu	37	11	118779066	118779066	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	118779066	118779066	C	T	SNP	BCL9L	ENST00000334801	human	ensembl	69_37n	-1	known	missense	c.325	p.G109S	1.000	NULL	pfam_BCL9_beta-catenin-bd_dom	-	no_errors	BCL9L	HGNC	ENSG00000186174	31	0	0.00	20	14	41.18	-	-	-
C2orf18	0	genome.wustl.edu	37	2	26997949	26997949	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	26997949	26997949	C	T	SNP	C2orf18	ENST00000344420	human	ensembl	69_37n	+1	known	missense	c.188	p.A63V	0.999	pirsf_UCP036436	pfam_DUF914_euk,pfam_Nuc_sug_transpt,pfam_DMT,pfam_DUF250,pfam_UAA,pirsf_UCP036436	-	no_errors	C2orf18	HGNC	ENSG00000213699	37	0	0.00	36	4	10.00	-	-	-
CARNS1	0	genome.wustl.edu	37	11	67186488	67186488	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	67186488	67186488	T	C	SNP	CARNS1	ENST00000445895	human	ensembl	69_37n	+1	known	missense	c.626	p.L209P	1.000	NULL	superfamily_PreATP-grasp_fold,superfamily_TIL_dom,pfscan_ATP-grasp	-	no_errors	CARNS1	HGNC	ENSG00000172508	11	0	0.00	10	5	33.33	-	-	-
CASZ1	0	genome.wustl.edu	37	1	10714015	10714015	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	10714015	10714015	G	A	SNP	CASZ1	ENST00000377022	human	ensembl	69_37n	-1	known	missense	c.2099	p.S700L	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CASZ1	HGNC	ENSG00000130940	16	0	0.00	22	16	42.11	-	-	-
CBFB	0	genome.wustl.edu	37	16	67100608	67100608	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	67100608	67100608	T	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	missense	c.306	p.I102M	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	131	1	0.76	20	60	75.00	-	-	-
CDH8	0	genome.wustl.edu	37	16	62055218	62055218	+	Silent	SNP	A	A	G			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	16	62055218	62055218	A	G	SNP	CDH8	ENST00000577390	human	ensembl	69_37n	-1	known	silent	c.90	p.A30	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	CDH8	HGNC	ENSG00000150394	63	0	0.00	8	34	80.95	-	-	-
CERS1	0	genome.wustl.edu	37	19	18994907	18994907	+	Silent	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	18994907	18994907	G	A	SNP	CERS1	ENST00000427170	human	ensembl	69_37n	-1	known	silent	c.579	p.S193	1.000	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	pfam_TLC-dom,smart_TLC-dom,pirsf_Longevity_assurance_LAG1_LAC1,pfscan_TLC-dom	-	no_errors	CERS1	HGNC	ENSG00000223802	26	0	0.00	20	9	31.03	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950807	16950807	+	RNA	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	16950807	16950807	C	T	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.483	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	8	0	0.00	15	4	21.05	-	-	-
DMD	0	genome.wustl.edu	37	X	31200940	31200940	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	31200940	31200940	C	T	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.9889	p.V3297I	1.000	pfam_EF-hand_dom_typ2,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	54	0	0.00	35	15	30.00	-	-	-
EML3	0	genome.wustl.edu	37	11	62378386	62378386	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	11	62378386	62378386	G	A	SNP	EML3	ENST00000494448	human	ensembl	69_37n	-1	known	missense	c.406	p.R136C	0.252	NULL	NULL	-	no_errors	EML3	HGNC	ENSG00000149499	25	0	0.00	13	4	23.53	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	30	0	0.00	34	9	20.93	-	-	-
FOXA1	0	genome.wustl.edu	37	14	38061213	38061213	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	14	38061213	38061213	T	G	SNP	FOXA1	ENST00000250448	human	ensembl	69_37n	-1	known	missense	c.776	p.Y259S	1.000	pfam_TF_fork_head,pfscan_TF_fork_head	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA1	HGNC	ENSG00000129514	8	0	0.00	18	7	28.00	-	-	-
GON4L	0	genome.wustl.edu	37	1	155734834	155734834	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	1	155734834	155734834	G	A	SNP	GON4L	ENST00000368331	human	ensembl	69_37n	-1	known	missense	c.4430	p.S1477L	1.000	NULL	pfam_PAH,superfamily_PAH,superfamily_Homeodomain-like,pfscan_Myb-like_dom	-	no_errors	GON4L	HGNC	ENSG00000116580	57	0	0.00	61	17	21.79	-	-	-
IKZF3	0	genome.wustl.edu	37	17	37988354	37988354	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	37988354	37988354	C	A	SNP	IKZF3	ENST00000346872	human	ensembl	69_37n	-1	known	missense	c.58	p.A20S	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	IKZF3	HGNC	ENSG00000161405	94	0	0.00	60	40	39.60	-	-	-
INO80	0	genome.wustl.edu	37	15	41388029	41388029	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	15	41388029	41388029	G	A	SNP	INO80	ENST00000361937	human	ensembl	69_37n	-1	known	missense	c.241	p.L81F	1.000	NULL	pfam_SNF2_N,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	INO80	HGNC	ENSG00000128908	59	0	0.00	32	15	31.91	-	-	-
KCNQ5	0	genome.wustl.edu	37	6	73787578	73787578	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	73787578	73787578	T	C	SNP	KCNQ5	ENST00000402622	human	ensembl	69_37n	+1	known	missense	c.886	p.S296P	1.000	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl	pfam_K_chnl_volt-dep_KCNQ_C,pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl_volt-dep_KCNQ,prints_K_chnl	-	no_errors	KCNQ5	HGNC	ENSG00000185760	129	1	0.77	111	29	20.71	-	-	-
LILRB4	0	genome.wustl.edu	37	19	55174519	55174519	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	55174519	55174519	G	A	SNP	LILRB4	ENST00000270452	human	ensembl	69_37n	+1	known	missense	c.34	p.G12R	0.682	NULL	pfam_Immunoglobulin,pfscan_Ig-like	-	no_errors	LILRB4	HGNC	ENSG00000186818	22	0	0.00	14	9	39.13	-	-	-
MAGEA4	0	genome.wustl.edu	37	X	151092941	151092941	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	X	151092941	151092941	C	T	SNP	MAGEA4	ENST00000276344	human	ensembl	69_37n	+1	known	missense	c.805	p.R269C	0.000	pfam_MAGE,pfscan_MAGE	pfam_MAGE,pfam_Melanoma_ass_antigen_N,pfscan_MAGE	-	no_errors	MAGEA4	HGNC	ENSG00000147381	50	0	0.00	21	29	58.00	-	-	-
PPP3R1	0	genome.wustl.edu	37	2	68413703	68413703	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	2	68413703	68413703	C	T	SNP	PPP3R1	ENST00000406334	human	ensembl	69_37n	-1	known	missense	c.332	p.G111E	1.000	pfscan_EF_HAND_2	pfam_EF-hand,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Parvalbumin	-	no_errors	PPP3R1	HGNC	ENSG00000221823	125	1	0.79	66	55	45.45	-	-	-
SERPINF2	0	genome.wustl.edu	37	17	1650702	1650702	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	17	1650702	1650702	T	C	SNP	SERPINF2	ENST00000324015	human	ensembl	69_37n	+1	known	missense	c.611	p.I204T	1.000	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINF2	HGNC	ENSG00000167711	31	0	0.00	13	9	40.91	-	-	-
SETD5	0	genome.wustl.edu	37	3	9495453	9495453	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	3	9495453	9495453	A	G	SNP	SETD5	ENST00000402198	human	ensembl	69_37n	+1	known	missense	c.2377	p.M793V	1.000	NULL	pfam_SET_dom,smart_SET_dom,pfscan_SET_dom	-	no_errors	SETD5	HGNC	ENSG00000168137	48	0	0.00	40	15	27.27	-	-	-
TBP	0	genome.wustl.edu	37	6	170871055	170871055	+	Silent	SNP	G	G	A			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	6	170871055	170871055	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.231	p.Q77	0.993	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	8	0	0.00	14	24	61.54	-	-	-
TRIP10	0	genome.wustl.edu	37	19	6743794	6743794	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A1FL-01A-11D-A13L-09	TCGA-BH-A1FL-11A-13D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bb84cbb1-7244-4d92-8977-a37dbafc47b4	d669a784-1fb6-417f-b4e6-34486d51f2e0	19	6743794	6743794	T	-	DEL	TRIP10	ENST00000313244	human	ensembl	69_37n	+1	known	frame_shift_del	c.589	p.F197fs	1.000	NULL	pfam_FCH,pfam_SH3_domain,superfamily_SH3_domain,smart_FCH,smart_SH3_domain,pfscan_FCH,pfscan_SH3_domain	-	no_errors	TRIP10	HGNC	ENSG00000125733	81	0	0.00	43	23	34.85	-	-	-
