Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
APOB	0	genome.wustl.edu	37	2	21233395	21233395	+	Silent	SNP	C	C	T			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	2	21233395	21233395	C	T	SNP	APOB	ENST00000233242	human	ensembl	69_37n	-1	known	silent	c.6345	p.L2115	0.025	NULL	pfam_Lipid_transpt_N,pfam_Vitellinogen_open_b-sht,pfam_ApoB100_C,pfam_Lipid_transpt_open_b-sht,superfamily_Lipid_transp_b-sht_shell,superfamily_Vitellinogen_superhlx,superfamily_ARM-type_fold,smart_Lipid_transpt_N,pfscan_Lipid_transpt_N	-	no_errors	APOB	HGNC	ENSG00000084674	66	0	0.00	56	15	21.13	-	-	-
COPS4	0	genome.wustl.edu	37	4	83971138	83971138	+	Splice_Site	SNP	G	G	A			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	4	83971138	83971138	G	A	SNP	COPS4	ENST00000264389	human	ensembl	69_37n	+1	known	splice_site	c.410+1	e4+1	1.000	-	-	-	no_errors	COPS4	HGNC	ENSG00000138663	74	0	0.00	50	8	13.79	-	-	-
FAM47B	0	genome.wustl.edu	37	X	34962644	34962644	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	X	34962644	34962644	C	A	SNP	FAM47B	ENST00000329357	human	ensembl	69_37n	+1	known	missense	c.1696	p.P566T	0.382	NULL	NULL	-	no_errors	FAM47B	HGNC	ENSG00000189132	48	0	0.00	46	12	20.69	-	-	-
HS3ST4	0	genome.wustl.edu	37	16	26147094	26147094	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	16	26147094	26147094	C	G	SNP	HS3ST4	ENST00000331351	human	ensembl	69_37n	+1	known	missense	c.896	p.T299R	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom	-	no_errors	HS3ST4	HGNC	ENSG00000182601	34	0	0.00	33	9	21.43	-	-	-
LAX1	0	genome.wustl.edu	37	1	203743056	203743056	+	Silent	SNP	A	A	T			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	1	203743056	203743056	A	T	SNP	LAX1	ENST00000442561	human	ensembl	69_37n	+1	known	silent	c.444	p.T148	0.000	NULL	NULL	-	no_errors	LAX1	HGNC	ENSG00000122188	27	0	0.00	24	14	36.84	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56155725	56155726	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	5	56155725	56155726	AG	-	DEL	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_del	c.817_818	p.R273fs	0.959:0.996	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	24	0	0.00	20	7	25.93	-	-	-
MAP3K13	0	genome.wustl.edu	37	3	185146386	185146386	+	Frame_Shift_Del	DEL	A	A	-			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	3	185146386	185146386	A	-	DEL	MAP3K13	ENST00000265026	human	ensembl	69_37n	+1	known	frame_shift_del	c.17	p.E6fs	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MAP3K13	HGNC	ENSG00000073803	16	0	0.00	4	2	33.33	-	-	-
MYCBP2	0	genome.wustl.edu	37	13	77748601	77748601	+	Silent	SNP	G	G	A			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	13	77748601	77748601	G	A	SNP	MYCBP2	ENST00000407578	human	ensembl	69_37n	-1	known	silent	c.5496	p.R1832	0.980	pfam_PHR,superfamily_ARM-type_fold	pfam_PHR,pfam_Reg_chr_condens,pfam_Filamin/ABP280_repeat-like,superfamily_Reg_csome_cond/b-lactamase_inh,superfamily_Galactose-bd-like,superfamily_Ig_E-set,superfamily_ARM-type_fold,smart_Znf_RING,prints_Reg_chr_condens,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_RING,pfscan_Reg_chr_condens	-	no_errors	MYCBP2	HGNC	ENSG00000005810	56	0	0.00	59	17	22.37	-	-	-
PCDHGA9	0	genome.wustl.edu	37	5	140784341	140784341	+	Silent	SNP	C	C	T			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	5	140784341	140784341	C	T	SNP	PCDHGA9	ENST00000573521	human	ensembl	69_37n	+1	known	silent	c.1822	p.L608	0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHGA9	HGNC	ENSG00000261934	21	0	0.00	12	11	47.83	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	45	0	0.00	43	7	14.00	-	-	-
RIC8B	0	genome.wustl.edu	37	12	107254119	107254119	+	Silent	SNP	A	A	G			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	12	107254119	107254119	A	G	SNP	RIC8B	ENST00000392837	human	ensembl	69_37n	+1	known	silent	c.1380	p.G460	1.000	pfam_Gua_nucleotide_exch_fac_Ric8	pfam_Gua_nucleotide_exch_fac_Ric8,superfamily_ARM-type_fold,prints_Synembryn	-	no_errors	RIC8B	HGNC	ENSG00000111785	39	0	0.00	34	7	17.07	-	-	-
SYT9	0	genome.wustl.edu	37	11	7324289	7324289	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	11	7324289	7324289	G	A	SNP	SYT9	ENST00000524820	human	ensembl	69_37n	+1	known	missense	c.22	p.D8N	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_Synaptotagmin,prints_C2_dom,pfscan_C2_membr_targeting	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYT9	HGNC	ENSG00000170743	59	0	0.00	84	17	16.83	-	-	-
TNFRSF11B	0	genome.wustl.edu	37	8	119936777	119936777	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A1JU-01A-11D-A13L-09	TCGA-D8-A1JU-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7bff4f75-749d-4a63-9a64-0bcf1cd615ea	3cfbf5a4-d74a-40d3-9598-2e7835ef1440	8	119936777	119936777	C	T	SNP	TNFRSF11B	ENST00000297350	human	ensembl	69_37n	-1	known	missense	c.1042	p.A348T	0.569	pirsf_TNFR_11B,pfam_Death,superfamily_DEATH-like,smart_Death	pirsf_TNFR_11B,pfam_TNFR/NGFR_Cys_rich_reg,pfam_Death,superfamily_DEATH-like,smart_TNFR/NGFR_Cys_rich_reg,smart_Death,prints_TNFR_11B,prints_TNFR_11,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF11B	HGNC	ENSG00000164761	60	0	0.00	95	32	25.20	-	-	-
