Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AGTPBP1	0	genome.wustl.edu	37	9	88272487	88272487	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	9	88272487	88272487	G	A	SNP	AGTPBP1	ENST00000376109	human	ensembl	69_37n	-1	known	missense	c.928	p.R310C	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGTPBP1	HGNC	ENSG00000135049	50	0	0.00	26	9	25.71	-	-	-
ASAP2	0	genome.wustl.edu	37	2	9467980	9467980	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	2	9467980	9467980	A	G	SNP	ASAP2	ENST00000281419	human	ensembl	69_37n	+1	known	missense	c.626	p.K209R	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,pfam_SH3_domain,pfam_SH3_2,superfamily_Ankyrin_rpt-contain_dom,superfamily_ArfGAP,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,smart_SH3_domain,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ASAP2	HGNC	ENSG00000151693	119	0	0.00	112	13	10.40	-	-	-
CCKAR	0	genome.wustl.edu	37	4	26491823	26491823	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	26491823	26491823	C	G	SNP	CCKAR	ENST00000295589	human	ensembl	69_37n	-1	known	missense	c.67	p.E23Q	0.649	pfam_CholecystokininA_recpt_N,prints_Cholcy_rcpt_A	pfam_7TM_GPCR_Rhodpsn,pfam_CholecystokininA_recpt_N,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Cholcy_rcpt_A,prints_Cholcskin_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Gastrin_rcpt,prints_NPY_rcpt	-	no_errors	CCKAR	HGNC	ENSG00000163394	50	0	0.00	52	7	11.86	-	-	-
CENPW	0	genome.wustl.edu	37	6	126669611	126669611	+	Splice_Site	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	126669611	126669611	G	A	SNP	CENPW	ENST00000368325	human	ensembl	69_37n	+1	known	splice_site	c.286-1	e3-1	1.000	-	-	-	no_errors	CENPW	HGNC	ENSG00000203760	79	0	0.00	29	14	32.56	-	-	-
FBXO34	0	genome.wustl.edu	37	14	55817206	55817206	+	Missense_Mutation	SNP	T	T	C			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	14	55817206	55817206	T	C	SNP	FBXO34	ENST00000313833	human	ensembl	69_37n	+1	known	missense	c.98	p.V33A	0.000	NULL	superfamily_F-box_dom_cyclin-like,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXO34	HGNC	ENSG00000178974	35	0	0.00	58	7	10.77	-	-	-
IGFBP4	0	genome.wustl.edu	37	17	38610201	38610201	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	17	38610201	38610201	G	A	SNP	IGFBP4	ENST00000269593	human	ensembl	69_37n	+1	known	missense	c.529	p.E177K	1.000	pfam_Thyroglobulin_1,superfamily_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata	pfam_Thyroglobulin_1,pfam_IGFBP-like,superfamily_Thyroglobulin_1,superfamily_Growth_fac_rcpt,smart_IGFBP-like,smart_Thyroglobulin_1,pfscan_Thyroglobulin_1,prints_IGFBP_1-6_chordata,prints_IGFBP-4	-	no_errors	IGFBP4	HGNC	ENSG00000141753	50	0	0.00	53	13	19.70	-	-	-
KCNAB1	0	genome.wustl.edu	37	3	156249278	156249278	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	156249278	156249278	G	A	SNP	KCNAB1	ENST00000490337	human	ensembl	69_37n	+1	known	missense	c.1162	p.A388T	1.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,tigrfam_K_chnl_volt-dep_bsu_KCNAB	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_K_chnl_volt-dep_bsu_KCNAB-rel,prints_K_chnl_volt-dep_bsu_KCNAB1,prints_K_chnl_volt-dep_bsu_KCNAB3,tigrfam_K_chnl_volt-dep_bsu_KCNAB	-	no_errors	KCNAB1	HGNC	ENSG00000169282	72	0	0.00	52	24	31.58	-	-	-
KIAA1462	0	genome.wustl.edu	37	10	30336682	30336683	+	Frame_Shift_Ins	INS	-	-	G			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	10	30336682	30336683	-	G	INS	KIAA1462	ENST00000375377	human	ensembl	69_37n	-1	known	frame_shift_ins	c.60_59	p.A21fs	0.000:0.001	NULL	NULL	-	no_errors	KIAA1462	HGNC	ENSG00000165757	24	0	0.00	23	7	23.33	-	-	-
KIAA2022	0	genome.wustl.edu	37	X	73960046	73960046	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	X	73960046	73960046	C	T	SNP	KIAA2022	ENST00000055682	human	ensembl	69_37n	-1	known	missense	c.4346	p.R1449H	1.000	NULL	NULL	-	no_errors	KIAA2022	HGNC	ENSG00000050030	113	0	0.00	85	36	29.75	-	-	-
KIF4B	0	genome.wustl.edu	37	5	154396151	154396151	+	Missense_Mutation	SNP	A	A	G			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	154396151	154396151	A	G	SNP	KIF4B	ENST00000435029	human	ensembl	69_37n	+1	known	missense	c.2732	p.E911G	0.772	NULL	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF4B	HGNC	ENSG00000226650	62	0	0.00	45	20	30.77	-	-	-
LRRC16A	0	genome.wustl.edu	37	6	25450164	25450164	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	25450164	25450164	G	A	SNP	LRRC16A	ENST00000329474	human	ensembl	69_37n	+1	novel	missense	c.410	p.R137H	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16A	HGNC	ENSG00000079691	37	0	0.00	32	16	33.33	-	-	-
MDGA1	0	genome.wustl.edu	37	6	37620076	37620076	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	37620076	37620076	G	C	SNP	MDGA1	ENST00000297153	human	ensembl	69_37n	-1	known	missense	c.1023	p.I341M	1.000	pfscan_Ig-like	pfam_Ig_I-set,pfam_MAM_dom,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_MAM_dom,pfscan_Fibronectin_type3,pfscan_MAM_dom,pfscan_Ig-like	-	no_errors	MDGA1	HGNC	ENSG00000112139	16	0	0.00	7	51	87.93	-	-	-
MYLK4	0	genome.wustl.edu	37	6	2689172	2689172	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	6	2689172	2689172	G	A	SNP	MYLK4	ENST00000268446	human	ensembl	69_37n	-1	known	missense	c.254	p.P85L	0.991	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MYLK4	HGNC	ENSG00000145949	47	0	0.00	52	6	10.34	-	-	-
PLSCR2	0	genome.wustl.edu	37	3	146171892	146171892	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	3	146171892	146171892	G	A	SNP	PLSCR2	ENST00000336685	human	ensembl	69_37n	-1	known	missense	c.380	p.P127L	0.704	pfam_Scramblase	pfam_Scramblase,superfamily_Tubby_C-like	-	no_errors	PLSCR2	HGNC	ENSG00000163746	84	0	0.00	67	15	18.29	-	-	-
POU4F2	0	genome.wustl.edu	37	4	147561811	147561811	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	147561811	147561811	G	A	SNP	POU4F2	ENST00000281321	human	ensembl	69_37n	+1	known	missense	c.1081	p.E361K	1.000	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_POU	pfam_POU_specific,pfam_Homeodomain,superfamily_Lambda_DNA-bd_dom,superfamily_Homeodomain-like,smart_POU_specific,smart_Homeodomain,pfscan_Homeodomain,pfscan_POU_specific,prints_POU	-	no_errors	POU4F2	HGNC	ENSG00000151615	25	0	0.00	26	6	18.75	-	-	-
RASGEF1C	0	genome.wustl.edu	37	5	179563506	179563506	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	5	179563506	179563506	G	A	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.310	p.R104W	1.000	pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	14	0	0.00	17	7	29.17	-	-	-
RPA3	0	genome.wustl.edu	37	7	7680043	7680043	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	7	7680043	7680043	C	T	SNP	RPA3	ENST00000223129	human	ensembl	69_37n	-1	known	missense	c.7	p.D3N	1.000	superfamily_NA-bd_OB-fold-like	pfam_Rep_factor-A_3,superfamily_NA-bd_OB-fold-like	-	no_errors	RPA3	HGNC	ENSG00000106399	33	0	0.00	16	6	27.27	-	-	-
SEMA6D	0	genome.wustl.edu	37	15	48052559	48052559	+	Silent	SNP	G	G	A			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	15	48052559	48052559	G	A	SNP	SEMA6D	ENST00000316364	human	ensembl	69_37n	+1	known	silent	c.168	p.R56	1.000	superfamily_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6D	HGNC	ENSG00000137872	71	0	0.00	47	18	27.69	-	-	-
SHANK2	0	genome.wustl.edu	37	11	70507831	70507831	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	11	70507831	70507831	C	G	SNP	SHANK2	ENST00000449833	human	ensembl	69_37n	-1	known	missense	c.42	p.M14I	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,pfam_PDZ,superfamily_PDZ,superfamily_SAM/pointed,smart_PDZ,smart_SAM,pfscan_PDZ,pfscan_SAM	-	no_errors	SHANK2	HGNC	ENSG00000162105	33	0	0.00	33	15	31.25	-	-	-
TSHZ2	0	genome.wustl.edu	37	20	51872712	51872712	+	Silent	SNP	C	C	T			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	20	51872712	51872712	C	T	SNP	TSHZ2	ENST00000371497	human	ensembl	69_37n	+1	known	silent	c.2715	p.Y905	1.000	superfamily_Homeodomain-like,smart_Homeodomain	superfamily_Homeodomain-like,smart_Znf_C2H2-like,smart_Homeodomain,pfscan_Znf_C2H2	-	no_errors	TSHZ2	HGNC	ENSG00000182463	44	0	0.00	62	47	42.73	-	-	-
ZNF721	0	genome.wustl.edu	37	4	437075	437075	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27W-01A-11D-A16D-09	TCGA-D8-A27W-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b045d675-286b-4cf8-aed4-c7ff81a78919	ce2ab463-47c2-4a91-840f-99210850f23d	4	437075	437075	C	T	SNP	ZNF721	ENST00000511833	human	ensembl	69_37n	-1	known	missense	c.1181	p.C394Y	0.998	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF721	HGNC	ENSG00000182903	99	0	0.00	141	20	12.42	-	-	-
