Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS7	0	genome.wustl.edu	37	15	79067099	79067099	+	Silent	SNP	G	G	C			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	15	79067099	79067099	G	C	SNP	ADAMTS7	ENST00000388820	human	ensembl	69_37n	-1	known	silent	c.1743	p.R581	0.974	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Thrombospondin_1_rpt,pfam_Peptidase_M12B,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS7	HGNC	ENSG00000136378	30	0	0.00	49	9	15.52	-	-	-
AKD1	0	genome.wustl.edu	37	6	109906330	109906332	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	109906330	109906332	CTT	0	DEL	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	in_frame_del	c.2110_2108	p.E703in_frame_del	0.004:0.003:0.004	NULL	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	9	0	0	2	3	60	-	-	-
ATM	0	genome.wustl.edu	37	11	108098605	108098605	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	11	108098605	108098605	G	T	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	missense	c.175	p.A59S	1.000	pfam_TAN	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	44	0	0.00	33	4	10.81	-	-	-
C6orf57	0	genome.wustl.edu	37	6	71298411	71298411	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	71298411	71298411	G	T	SNP	C6orf57	ENST00000370474	human	ensembl	69_37n	+1	known	missense	c.311	p.R104L	1.000	pfam_DUF1674	pfam_DUF1674	-	no_errors	C6orf57	HGNC	ENSG00000154079	28	0	0.00	27	4	12.90	-	-	-
CDH1	0	genome.wustl.edu	37	16	68857397	68857398	+	Frame_Shift_Ins	INS	-	-	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	16	68857397	68857398	-	T	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.2032_2033	p.T679fs	1.000:1.000	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	38	0	0.00	20	7	25.93	-	-	-
FAM153A	0	genome.wustl.edu	37	5	177171957	177171957	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	5	177171957	177171957	G	A	SNP	FAM153A	ENST00000360669	human	ensembl	69_37n	-1	known	missense	c.40	p.R14W	0.012	prints_FAM153	prints_FAM153	-	no_errors	FAM153A	HGNC	ENSG00000170074	47	0	0.00	30	5	14.29	-	-	-
GPNMB	0	genome.wustl.edu	37	7	23309653	23309653	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	23309653	23309653	A	C	SNP	GPNMB	ENST00000381990	human	ensembl	69_37n	+1	known	missense	c.1324	p.S442R	0.036	NULL	pfam_PKD_dom,superfamily_PKD_dom,smart_PKD/Chitinase_dom,pfscan_PKD_dom	-	no_errors	GPNMB	HGNC	ENSG00000136235	33	0	0.00	36	21	36.84	-	-	-
GSR	0	genome.wustl.edu	37	8	30557645	30557645	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	8	30557645	30557645	G	A	SNP	GSR	ENST00000520888	human	ensembl	69_37n	-1	novel	missense	c.514	p.L172F	0.754	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_Pyr_OxRdtase_NAD-bd_dom,prints_FAD_pyr_nucl-diS_OxRdtase,prints_Hg_reductase	-	pseudogene:no_stop_codon	GSR	HGNC	ENSG00000104687	45	0	0.00	35	5	12.50	-	-	-
HDAC2	0	genome.wustl.edu	37	6	114292109	114292110	+	In_Frame_Ins	INS	-	-	CTG			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	114292109	114292110	-	CTG	INS	HDAC2	ENST00000398283	human	ensembl	69_37n	-1	known	in_frame_ins	c.246_245	p.82in_frame_insS	0.014:0.004	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591	11	0	0.00	13	2	13.33	-	-	-
HSP90AB1	0	genome.wustl.edu	37	6	44219526	44219526	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	44219526	44219526	G	T	SNP	HSP90AB1	ENST00000353801	human	ensembl	69_37n	+1	known	missense	c.1367	p.R456L	1.000	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold,pirsf_Hsp90	pfam_Hsp90,pfam_ATPase-like_ATP-bd,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_ATPase-like_ATP-bd,smart_ATPase-like_ATP-bd,pirsf_Hsp90,prints_Hsp90_N	-	no_errors	HSP90AB1	HGNC	ENSG00000096384	52	0	0.00	52	11	17.46	-	-	-
HSP90AB1	0	genome.wustl.edu	37	6	44219527	44219527	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	6	44219527	44219527	C	T	SNP	HSP90AB1	ENST00000435812	human	ensembl	69_37n	+1	known	missense	c.245	p.A82V	0.997	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	pfam_Hsp90,superfamily_Ribosomal_S5_D2-typ_fold	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HSP90AB1	HGNC	ENSG00000096384	53	0	0.00	52	10	16.13	-	-	-
NUP214	0	genome.wustl.edu	37	9	134027158	134027158	+	Silent	SNP	T	T	G			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	9	134027158	134027158	T	G	SNP	NUP214	ENST00000451030	human	ensembl	69_37n	+1	known	silent	c.2316	p.T772	0.000	NULL	smart_WD40_repeat	-	no_errors	NUP214	HGNC	ENSG00000126883	75	0	0.00	58	14	19.44	-	-	-
OPN4	0	genome.wustl.edu	37	10	88421081	88421081	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	10	88421081	88421081	G	A	SNP	OPN4	ENST00000372071	human	ensembl	69_37n	+1	known	missense	c.1042	p.V348I	0.995	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Opsin	-	no_errors	OPN4	HGNC	ENSG00000122375	44	0	0.00	26	5	16.13	-	-	-
PAXIP1	0	genome.wustl.edu	37	7	154767672	154767672	+	Frame_Shift_Del	DEL	C	C	-			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	154767672	154767672	C	-	DEL	PAXIP1	ENST00000397192	human	ensembl	69_37n	-1	known	frame_shift_del	c.808	p.E270fs	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	PAXIP1	HGNC	ENSG00000157212	56	0	0.00	49	10	16.39	-	-	-
SLX4	0	genome.wustl.edu	37	16	3656563	3656563	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	16	3656563	3656563	C	A	SNP	SLX4	ENST00000294008	human	ensembl	69_37n	-1	known	missense	c.672	p.L224F	0.588	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	SLX4	HGNC	ENSG00000188827	92	0	0.00	90	33	26.83	-	-	-
SOGA1	0	genome.wustl.edu	37	20	35443694	35443694	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	20	35443694	35443694	C	A	SNP	SOGA1	ENST00000465671	human	ensembl	69_37n	-1	known	nonsense	c.991	p.E331*	0.938	NULL	pfam_DUF3166	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SOGA1	HGNC	ENSG00000149639	22	0	0.00	18	4	18.18	-	-	-
TAS2R38	0	genome.wustl.edu	37	7	141672880	141672880	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	7	141672880	141672880	G	T	SNP	TAS2R38	ENST00000547270	human	ensembl	69_37n	-1	known	missense	c.610	p.P204T	0.000	pfam_TAS2_rcpt	pfam_TAS2_rcpt	-	no_errors	TAS2R38	HGNC	ENSG00000257138	43	0	0.00	24	4	14.29	-	-	-
TBX3	0	genome.wustl.edu	37	12	115115446	115115446	+	Frame_Shift_Del	DEL	T	T	-			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	12	115115446	115115446	T	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.880	p.I294fs	1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	66	0	0.00	37	9	19.57	-	-	-
TBX5	0	genome.wustl.edu	37	12	114793417	114793417	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	12	114793417	114793417	C	T	SNP	TBX5	ENST00000310346	human	ensembl	69_37n	-1	known	missense	c.1477	p.V493M	0.986	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,prints_TF_T-box,pfscan_TF_T-box	-	no_errors	TBX5	HGNC	ENSG00000089225	19	0	0.00	15	8	34.78	-	-	-
TNRC6C	0	genome.wustl.edu	37	17	76089144	76089144	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	17	76089144	76089144	G	A	SNP	TNRC6C	ENST00000335749	human	ensembl	69_37n	+1	known	nonsense	c.4092	p.W1364*	1.000	NULL	pfam_Argonaute_hook_dom,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TNRC6C	HGNC	ENSG00000078687	59	0	0.00	35	11	23.91	-	-	-
TSC22D1	0	genome.wustl.edu	37	13	45010182	45010182	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	13	45010182	45010182	T	C	SNP	TSC22D1	ENST00000458659	human	ensembl	69_37n	-1	known	missense	c.2962	p.M988V	1.000	pfam_TSC-22_Dip_Bun	pfam_TSC-22_Dip_Bun	-	no_errors	TSC22D1	HGNC	ENSG00000102804	87	0	0.00	39	10	20.41	-	-	-
ZNF761	0	genome.wustl.edu	37	19	53959457	53959457	+	RNA	DEL	A	A	-			TCGA-E2-A1IJ-01A-11D-A142-09	TCGA-E2-A1IJ-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	3aff2da1-1647-4b95-abdb-c9db923cfc22	62243d12-b286-4315-b6da-71ef06c668c8	19	53959457	53959457	A	-	DEL	ZNF761	ENST00000334095	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF761	HGNC	ENSG00000160336	54	0	0.00	17	2	10.53	-	-	-
