Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARL6IP6	0	genome.wustl.edu	37	2	153575506	153575508	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	153575506	153575508	TCC	-	DEL	ARL6IP6	ENST00000326446	human	ensembl	69_37n	+1	known	in_frame_del	c.368_370	p.L125in_frame_del	0.946:0.969:0.994	NULL	NULL	-	no_errors	ARL6IP6	HGNC	ENSG00000177917	100	0	0.00	79	37	31.62	-	-	-
CASS4	0	genome.wustl.edu	37	20	55021046	55021046	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	20	55021046	55021046	G	A	SNP	CASS4	ENST00000360314	human	ensembl	69_37n	+1	known	missense	c.550	p.V184M	0.000	NULL	pfam_Serine_rich,pfam_CAS_DUF3513,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	-	no_errors	CASS4	HGNC	ENSG00000087589	54	0	0.00	42	82	66.13	-	-	-
CCP110	0	genome.wustl.edu	37	16	19556523	19556523	+	Silent	SNP	C	C	G			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	16	19556523	19556523	C	G	SNP	CCP110	ENST00000381396	human	ensembl	69_37n	+1	known	silent	c.2694	p.L898	1.000	NULL	NULL	-	no_errors	CCP110	HGNC	ENSG00000103540	120	0	0.00	63	18	22.22	-	-	-
CHD1	0	genome.wustl.edu	37	5	98240749	98240749	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	5	98240749	98240749	G	C	SNP	CHD1	ENST00000284049	human	ensembl	69_37n	-1	known	missense	c.107	p.S36C	1.000	NULL	pfam_SNF2_N,pfam_Chromo_domain,pfam_Helicase_C,superfamily_Chromodomain-like,superfamily_Homeodomain-like,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD1	HGNC	ENSG00000153922	74	0	0.00	52	28	35.00	-	-	-
CYBASC3	0	genome.wustl.edu	37	11	61120579	61120579	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	61120579	61120579	G	C	SNP	CYBASC3	ENST00000540755	human	ensembl	69_37n	-1	known	missense	c.217	p.L73V	1.000	NULL	NULL	-	no_errors	CYBASC3	HGNC	ENSG00000162144	33	0	0.00	23	10	30.30	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	47	0	0.00	52	17	24.64	-	-	-
FOXA3	0	genome.wustl.edu	37	19	46376175	46376175	+	Silent	SNP	C	C	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	19	46376175	46376175	C	T	SNP	FOXA3	ENST00000302177	human	ensembl	69_37n	+1	known	silent	c.912	p.F304	1.000	pfam_Forkhead_box_C	pfam_TF_fork_head,pfam_Fork-head_N,pfam_Forkhead_box_C,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXA3	HGNC	ENSG00000170608	44	0	0.00	13	5	27.78	-	-	-
FXR2	0	genome.wustl.edu	37	17	7496417	7496417	+	Silent	SNP	C	C	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	7496417	7496417	C	T	SNP	FXR2	ENST00000250113	human	ensembl	69_37n	-1	known	silent	c.1413	p.R471	0.981	pfam_Frag_X_MRP_fam	pfam_Frag_X_MRP_fam,pfam_KH_dom_type_1,pfam_Agenet,smart_KH_dom,pfscan_KH_dom_type_1	-	no_errors	FXR2	HGNC	ENSG00000129245	25	0	0.00	22	10	31.25	-	-	-
GEMIN2	0	genome.wustl.edu	37	14	39584053	39584053	+	Nonsense_Mutation	SNP	C	C	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	14	39584053	39584053	C	T	SNP	GEMIN2	ENST00000527381	human	ensembl	69_37n	+1	novel	nonsense	c.157	p.Q53*	1.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	GEMIN2	HGNC	ENSG00000092208	160	0	0.00	114	52	31.33	-	-	-
HEATR5B	0	genome.wustl.edu	37	2	37306265	37306265	+	Silent	SNP	T	T	C			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	37306265	37306265	T	C	SNP	HEATR5B	ENST00000233099	human	ensembl	69_37n	-1	known	silent	c.336	p.K112	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR5B	HGNC	ENSG00000008869	66	0	0.00	54	20	27.03	-	-	-
HEPACAM	0	genome.wustl.edu	37	11	124794753	124794753	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	124794753	124794753	G	A	SNP	HEPACAM	ENST00000298251	human	ensembl	69_37n	-1	known	nonsense	c.298	p.R100*	0.950	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	HEPACAM	HGNC	ENSG00000165478	64	0	0.00	21	11	33.33	-	-	-
MMACHC	0	genome.wustl.edu	37	1	45974548	45974548	+	Silent	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	45974548	45974548	G	A	SNP	MMACHC	ENST00000401061	human	ensembl	69_37n	+1	known	silent	c.510	p.E170	0.999	NULL	NULL	-	no_errors	MMACHC	HGNC	ENSG00000132763	86	0	0.00	60	20	25.00	-	-	-
NUP98	0	genome.wustl.edu	37	11	3803284	3803284	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	3803284	3803284	T	C	SNP	NUP98	ENST00000324932	human	ensembl	69_37n	-1	known	missense	c.64	p.T22A	1.000	NULL	pfam_Nup96,pfam_Peptidase_S59,superfamily_Peptidase_S59	-	no_errors	NUP98	HGNC	ENSG00000110713	109	0	0.00	57	24	29.63	-	-	-
OSBPL6	0	genome.wustl.edu	37	2	179213982	179213982	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	2	179213982	179213982	G	A	SNP	OSBPL6	ENST00000315022	human	ensembl	69_37n	+1	known	missense	c.1031	p.R344H	1.000	NULL	pfam_Oxysterol-bd,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL6	HGNC	ENSG00000079156	145	0	0.00	108	32	22.86	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	73	0	0.00	46	9	16.36	-	-	-
PLK4	0	genome.wustl.edu	37	4	128804491	128804491	+	Silent	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	4	128804491	128804491	G	A	SNP	PLK4	ENST00000270861	human	ensembl	69_37n	+1	known	silent	c.201	p.L67	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_POLO_box_duplicated_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_POLO_box_duplicated_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	PLK4	HGNC	ENSG00000142731	82	0	0.00	41	22	34.92	-	-	-
PSTPIP2	0	genome.wustl.edu	37	18	43579418	43579418	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	18	43579418	43579418	G	A	SNP	PSTPIP2	ENST00000409746	human	ensembl	69_37n	-1	known	missense	c.500	p.P167L	0.078	NULL	pfam_FCH,smart_FCH,pfscan_FCH	-	no_errors	PSTPIP2	HGNC	ENSG00000152229	161	0	0.00	111	35	23.81	-	-	-
RTN3	0	genome.wustl.edu	37	11	63525654	63525654	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	11	63525654	63525654	C	T	SNP	RTN3	ENST00000377819	human	ensembl	69_37n	+1	known	missense	c.3080	p.A1027V	1.000	pfscan_Reticulon	pfam_Reticulon,pfscan_Reticulon	-	no_errors	RTN3	HGNC	ENSG00000133318	70	0	0.00	51	11	17.74	-	-	-
SARDH	0	genome.wustl.edu	37	9	136531950	136531950	+	Silent	SNP	G	G	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	9	136531950	136531950	G	T	SNP	SARDH	ENST00000371872	human	ensembl	69_37n	-1	known	silent	c.2538	p.G846	0.876	pfam_GCV_T_C	pfam_FAD-dep_OxRdtase,pfam_GCV_T_N,pfam_GCV_T_C	-	no_errors	SARDH	HGNC	ENSG00000123453	46	0	0.00	29	11	27.50	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158583566	158583566	+	Nonsense_Mutation	SNP	C	C	A			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	1	158583566	158583566	C	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	nonsense	c.6934	p.E2312*	1.000	NULL	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	44	0	0.00	45	18	28.57	-	-	-
TNP2	0	genome.wustl.edu	37	16	11362818	11362818	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	16	11362818	11362818	C	T	SNP	TNP2	ENST00000312693	human	ensembl	69_37n	-1	known	missense	c.302	p.R101H	0.036	pfam_TP2	pfam_TP2	-	no_errors	TNP2	HGNC	ENSG00000178279	208	0	0.00	149	64	30.05	-	-	-
TRPV2	0	genome.wustl.edu	37	17	16335490	16335492	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-E9-A229-01A-31D-A17G-09	TCGA-E9-A229-10B-01D-A159-09	TGC	TGC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a27fa57d-d1ad-4534-a933-0fdcc5f06a8c	32df7bac-7bb4-4538-800f-893a1ab3d28c	17	16335490	16335492	TGC	-	DEL	TRPV2	ENST00000338560	human	ensembl	69_37n	+1	known	in_frame_del	c.1865_1867	p.L626in_frame_del	1.000:1.000:1.000	tigrfam_TRP_channel	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_TRPV1-4_channel,tigrfam_TRP_channel	-	no_errors	TRPV2	HGNC	ENSG00000187688	45	0	0.00	23	3	11.54	-	-	-
