Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CADM3	0	genome.wustl.edu	37	1	159163753	159163753	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	1	159163753	159163753	C	T	SNP	CADM3	ENST00000368124	human	ensembl	69_37n	+1	known	missense	c.716	p.A239V	0.488	pfam_CD80_C2-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_CD80_C2-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Ig_C1-set,smart_Ig_sub,smart_Ig_sub2,smart_Neurexin-like,pfscan_Ig-like	-	no_errors	CADM3	HGNC	ENSG00000162706	57	0	0.00	26	7	21.21	-	-	-
CDH26	0	genome.wustl.edu	37	20	58559787	58559787	+	Nonsense_Mutation	SNP	T	T	A			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	20	58559787	58559787	T	A	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	+1	known	nonsense	c.635	p.L212*	0.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	115	0	0.00	84	10	10.64	-	-	-
FRAS1	0	genome.wustl.edu	37	4	79462038	79462038	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	4	79462038	79462038	G	A	SNP	FRAS1	ENST00000512123	human	ensembl	69_37n	+1	novel	missense	c.6484	p.E2162K	0.045	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FRAS1	HGNC	ENSG00000138759	51	0	0.00	38	6	13.64	-	-	-
IL10RB	0	genome.wustl.edu	37	21	34668541	34668541	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	21	34668541	34668541	C	T	SNP	IL10RB	ENST00000290200	human	ensembl	69_37n	+1	known	missense	c.857	p.S286L	0.001	NULL	pfam_Interferon_alpha/beta_rcpt_bsu,superfamily_Fibronectin_type3	-	no_errors	IL10RB	HGNC	ENSG00000243646	104	0	0.00	82	11	11.83	-	-	-
KLF7	0	genome.wustl.edu	37	2	207988824	207988824	+	Nonsense_Mutation	SNP	A	A	T			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	2	207988824	207988824	A	T	SNP	KLF7	ENST00000309446	human	ensembl	69_37n	-1	known	nonsense	c.407	p.L136*	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	KLF7	HGNC	ENSG00000118263	66	0	0.00	43	5	10.42	-	-	-
NEUROD1	0	genome.wustl.edu	37	2	182542799	182542799	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	2	182542799	182542799	A	T	SNP	NEUROD1	ENST00000295108	human	ensembl	69_37n	-1	known	missense	c.789	p.D263E	0.436	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD1	HGNC	ENSG00000162992	43	0	0.00	27	7	20.59	-	-	-
TERF2IP	0	genome.wustl.edu	37	16	75690204	75690206	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-EW-A1PG-01A-11D-A142-09	TCGA-EW-A1PG-10A-01D-A142-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	bd3801e2-c5bb-4116-9ce3-97903fc6956e	01c3cc25-bb81-4cc3-a9aa-e07f44991c3f	16	75690204	75690206	GAA	-	DEL	TERF2IP	ENST00000300086	human	ensembl	69_37n	+1	putative	in_frame_del	c.895_897	p.E302in_frame_del	0.540:0.562:0.617	NULL	pfam_Rap1_Myb_dom,superfamily_Homeodomain-like,superfamily_BRCT_dom	-	no_errors	TERF2IP	HGNC	ENSG00000166848	28	0	0.00	27	4	12.90	-	-	-
