Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCB5	0	genome.wustl.edu	37	7	20687685	20687685	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	7	20687685	20687685	C	T	SNP	ABCB5	ENST00000404938	human	ensembl	69_37n	+1	putative	missense	c.1190	p.S397L	1.000	superfamily_ABC_transptrTM_dom_typ1,pfscan_ABC_transporter-like	pfam_ABC_transptr_TM_dom,pfam_ABC_transporter-like,pfam_ABC_ATPase_put,superfamily_ABC_transptrTM_dom_typ1,smart_AAA+_ATPase,pfscan_ABC_transporter-like,pfscan_ABC_transporter_type1	-	no_errors	ABCB5	HGNC	ENSG00000004846	31	0	0.00	33	16	32.65	-	-	-
AMPD1	0	genome.wustl.edu	37	1	115217393	115217393	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	115217393	115217393	G	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.1879	p.H627D	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	33	0	0.00	59	23	28.05	-	-	-
AP1G2	0	genome.wustl.edu	37	14	24032994	24032994	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	14	24032994	24032994	G	T	SNP	AP1G2	ENST00000308724	human	ensembl	69_37n	-1	known	missense	c.1163	p.A388D	1.000	pfam_Clathrin/coatomer_adapt-like_N,superfamily_ARM-type_fold,pirsf_AP1_complex_gsu	pfam_Clathrin/coatomer_adapt-like_N,pfam_Clathrin_a/b/g-adaptin_app_Ig,superfamily_ARM-type_fold,superfamily_Coatomer/clathrin_app_Ig-like,smart_Clathrin_a/b/g-adaptin_app_Ig,pirsf_AP1_complex_gsu,pfscan_Clathrin_g-adaptin_app	-	no_errors	AP1G2	HGNC	ENSG00000213983	24	0	0.00	61	15	19.74	-	-	-
ARFIP2	0	genome.wustl.edu	37	11	6499366	6499366	+	Nonstop_Mutation	SNP	T	T	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	11	6499366	6499366	T	C	SNP	ARFIP2	ENST00000531037	human	ensembl	69_37n	-1	known	nonstop	c.479	p.*160W	0.911	NULL	pfam_Arfaptin_homology_dom	-	no_errors	ARFIP2	HGNC	ENSG00000132254	101	0	0.00	165	37	18.32	-	-	-
BCOR	0	genome.wustl.edu	37	X	39931968	39931968	+	Silent	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	X	39931968	39931968	G	A	SNP	BCOR	ENST00000378444	human	ensembl	69_37n	-1	known	silent	c.2631	p.T877	0.002	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	BCOR	HGNC	ENSG00000183337	70	0	0.00	15	44	74.58	-	-	-
CD14	0	genome.wustl.edu	37	5	140012442	140012442	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	140012442	140012442	G	T	SNP	CD14	ENST00000302014	human	ensembl	69_37n	-1	known	missense	c.127	p.P43T	0.965	pirsf_Monocyte_diff_Ag_CD14	pfam_Leu-rich_rpt,pirsf_Monocyte_diff_Ag_CD14	-	no_errors	CD14	HGNC	ENSG00000170458	31	0	0.00	17	4	19.05	-	-	-
CEACAM4	0	genome.wustl.edu	37	19	42126986	42126986	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	42126986	42126986	C	T	SNP	CEACAM4	ENST00000221954	human	ensembl	69_37n	-1	known	missense	c.557	p.R186H	0.000	NULL	pfam_Ig_V-set,pfscan_Ig-like	-	no_errors	CEACAM4	HGNC	ENSG00000105352	24	0	0.00	18	4	18.18	-	-	-
CEP128	0	genome.wustl.edu	37	14	81329196	81329196	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	14	81329196	81329196	G	A	SNP	CEP128	ENST00000281129	human	ensembl	69_37n	-1	known	missense	c.667	p.R223W	0.727	NULL	NULL	-	no_errors	CEP128	HGNC	ENSG00000100629	104	0	0.00	76	41	34.75	-	-	-
COL5A1	0	genome.wustl.edu	37	9	137623972	137623972	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	137623972	137623972	C	T	SNP	COL5A1	ENST00000371817	human	ensembl	69_37n	+1	known	missense	c.1388	p.P463L	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,pfam_Laminin_G,superfamily_ConA-like_lec_gl,superfamily_Fibrinogen_a/b/g_C,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A1	HGNC	ENSG00000130635	72	0	0.00	68	35	33.98	-	-	-
DBX2	0	genome.wustl.edu	37	12	45444331	45444331	+	Frame_Shift_Del	DEL	C	C	-			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	45444331	45444331	C	-	DEL	DBX2	ENST00000332700	human	ensembl	69_37n	-1	known	frame_shift_del	c.380	p.C127fs	0.451	NULL	pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DBX2	HGNC	ENSG00000185610	12	0	0.00	4	3	37.50	-	-	-
DKKL1	0	genome.wustl.edu	37	19	49878066	49878066	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	49878066	49878066	G	A	SNP	DKKL1	ENST00000221498	human	ensembl	69_37n	+1	known	nonsense	c.510	p.W170*	1.000	NULL	NULL	-	no_errors	DKKL1	HGNC	ENSG00000104901	14	0	0.00	10	4	28.57	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11597227	11597227	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	11597227	11597227	C	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	missense	c.4657	p.L1553V	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	68	0	0.00	163	41	20.10	-	-	-
DNAJC13	0	genome.wustl.edu	37	3	132224254	132224254	+	Nonsense_Mutation	SNP	A	A	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	132224254	132224254	A	T	SNP	DNAJC13	ENST00000260818	human	ensembl	69_37n	+1	known	nonsense	c.4993	p.K1665*	1.000	superfamily_ARM-type_fold	pfam_DnaJ_N,superfamily_ARM-type_fold,superfamily_GYF,smart_DnaJ_N,pfscan_DnaJ_N	-	no_errors	DNAJC13	HGNC	ENSG00000138246	16	0	0.00	16	17	51.52	-	-	-
HOOK1	0	genome.wustl.edu	37	1	60306040	60306040	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	60306040	60306040	A	G	SNP	HOOK1	ENST00000371208	human	ensembl	69_37n	+1	known	missense	c.598	p.R200G	0.473	pfam_HOOK,superfamily_Prefoldin	pfam_HOOK,superfamily_Prefoldin	-	no_errors	HOOK1	HGNC	ENSG00000134709	62	0	0.00	74	12	13.95	-	-	-
KIAA0020	0	genome.wustl.edu	37	9	2812275	2812275	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	2812275	2812275	G	C	SNP	KIAA0020	ENST00000397885	human	ensembl	69_37n	-1	known	missense	c.1357	p.H453D	0.999	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	pfam_CPL,superfamily_ARM-type_fold,smart_Pumilio_RNA-bd_rpt,pfscan_Pumilio_RNA-bd_rpt	-	no_errors	KIAA0020	HGNC	ENSG00000080608	149	0	0.00	245	69	21.97	-	-	-
KIAA1429	0	genome.wustl.edu	37	8	95500959	95500959	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	95500959	95500959	C	T	SNP	KIAA1429	ENST00000297591	human	ensembl	69_37n	-1	known	missense	c.5414	p.R1805H	1.000	NULL	superfamily_ARM-type_fold	-	no_errors	KIAA1429	HGNC	ENSG00000164944	125	0	0.00	350	64	15.46	-	-	-
KIAA1715	0	genome.wustl.edu	37	2	176802242	176802242	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	176802242	176802242	G	C	SNP	KIAA1715	ENST00000544803	human	ensembl	69_37n	-1	known	missense	c.977	p.A326G	1.000	pfam_DUF2296	pfam_DUF2296	-	no_errors	KIAA1715	HGNC	ENSG00000144320	22	0	0.00	19	17	47.22	-	-	-
KRT7	0	genome.wustl.edu	37	12	52636898	52636898	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	52636898	52636898	G	C	SNP	KRT7	ENST00000331817	human	ensembl	69_37n	+1	known	missense	c.961	p.E321Q	1.000	pfam_F,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II	pfam_F,superfamily_Prefoldin,superfamily_Chorismate_mutase_type_II,prints_Keratin_II	-	no_errors	KRT7	HGNC	ENSG00000135480	34	0	0.00	32	18	36.00	-	-	-
LAMC1	0	genome.wustl.edu	37	1	183093958	183093960	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	183093958	183093960	AAG	-	DEL	LAMC1	ENST00000258341	human	ensembl	69_37n	+1	known	in_frame_del	c.2594_2596	p.KD865in_frame_delN	1.000:0.998:0.999	pfam_EGF_laminin,smart_EGF_laminin,smart_EGF-like,pfscan_EGF_laminin	pfam_Laminin_N,pfam_EGF_laminin,pfam_Laminin_B_type_IV,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC1	HGNC	ENSG00000135862	52	0	0.00	104	22	17.05	-	-	-
LCT	0	genome.wustl.edu	37	2	136566347	136566347	+	Silent	SNP	A	A	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	136566347	136566347	A	G	SNP	LCT	ENST00000264162	human	ensembl	69_37n	-1	known	silent	c.3570	p.T1190	0.482	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF	pfam_Glyco_hydro_1,superfamily_Glycoside_hydrolase_SF,prints_Glyco_hydro_1	-	no_errors	LCT	HGNC	ENSG00000115850	88	0	0.00	106	40	27.40	-	-	-
LGR5	0	genome.wustl.edu	37	12	71833917	71833917	+	Silent	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	12	71833917	71833917	G	A	SNP	LGR5	ENST00000266674	human	ensembl	69_37n	+1	known	silent	c.57	p.A19	0.981	NULL	pfam_Leu-rich_rpt,pfam_7TM_GPCR_Rhodpsn,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,pfscan_GPCR_Rhodpsn_supfam,prints_Gphrmn_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	LGR5	HGNC	ENSG00000139292	25	0	0.00	11	5	31.25	-	-	-
LINGO2	0	genome.wustl.edu	37	9	27949218	27949218	+	Silent	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	9	27949218	27949218	G	A	SNP	LINGO2	ENST00000308675	human	ensembl	69_37n	-1	known	silent	c.1452	p.I484	0.202	pfam_Ig_I-set,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Leu-rich_rpt,pfam_Ig_V-set,pfam_LRR-contain_N,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LINGO2	HGNC	ENSG00000174482	64	0	0.00	92	26	21.85	-	-	-
LPCAT4	0	genome.wustl.edu	37	15	34655637	34655637	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	15	34655637	34655637	C	T	SNP	LPCAT4	ENST00000314891	human	ensembl	69_37n	-1	known	nonsense	c.732	p.W244*	1.000	NULL	pfam_Acyltransferase,smart_Acyltransferase	-	no_errors	LPCAT4	HGNC	ENSG00000176454	54	0	0.00	69	25	26.60	-	-	-
LRP2	0	genome.wustl.edu	37	2	170134405	170134405	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	170134405	170134405	G	T	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1622	p.A541E	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	53	0	0.00	135	31	18.67	-	-	-
MMP11	0	genome.wustl.edu	37	22	24124523	24124523	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	22	24124523	24124523	G	A	SNP	MMP11	ENST00000215743	human	ensembl	69_37n	+1	known	missense	c.1186	p.E396K	0.984	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Hemopexin/matrixin_repeat	pirsf_Pept_M10A_matrix_strom,pfam_Pept_M10_metallopeptidase,pfam_Hemopexin/matrixin_repeat,superfamily_Hemopexin/matrixin,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP11	HGNC	ENSG00000099953	37	0	0.00	14	5	26.32	-	-	-
MYLPF	0	genome.wustl.edu	37	16	30389183	30389183	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	16	30389183	30389183	T	C	SNP	MYLPF	ENST00000322861	human	ensembl	69_37n	+1	known	missense	c.472	p.Y158H	1.000	NULL	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	-	no_errors	MYLPF	HGNC	ENSG00000180209	17	0	0.00	12	12	50.00	-	-	-
PCDH15	0	genome.wustl.edu	37	10	55582871	55582871	+	Missense_Mutation	SNP	T	T	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	10	55582871	55582871	T	A	SNP	PCDH15	ENST00000320301	human	ensembl	69_37n	-1	known	missense	c.4615	p.N1539Y	0.000	NULL	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH15	HGNC	ENSG00000150275	17	0	0.00	25	10	28.57	-	-	-
PDZD2	0	genome.wustl.edu	37	5	32090922	32090922	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	5	32090922	32090922	G	C	SNP	PDZD2	ENST00000282493	human	ensembl	69_37n	+1	known	missense	c.7368	p.M2456I	0.000	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD2	HGNC	ENSG00000133401	38	0	0.00	27	11	28.95	-	-	-
PROX1	0	genome.wustl.edu	37	1	214184963	214184963	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	214184963	214184963	G	A	SNP	PROX1	ENST00000261454	human	ensembl	69_37n	+1	known	missense	c.1933	p.D645N	1.000	pfam_Prox1,superfamily_Homeodomain-like	pfam_Prox1,superfamily_Homeodomain-like	-	no_errors	PROX1	HGNC	ENSG00000117707	56	0	0.00	95	43	30.94	-	-	-
PRUNE	0	genome.wustl.edu	37	1	150998051	150998051	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	150998051	150998051	A	G	SNP	PRUNE	ENST00000271620	human	ensembl	69_37n	+1	known	missense	c.581	p.D194G	0.998	NULL	pfam_DHHA2,pfam_Pesterase_RecJ	-	no_errors	PRUNE	HGNC	ENSG00000143363	69	0	0.00	140	25	15.15	-	-	-
PXDNL	0	genome.wustl.edu	37	8	52321996	52321996	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	52321996	52321996	G	T	SNP	PXDNL	ENST00000356297	human	ensembl	69_37n	-1	known	missense	c.2188	p.H730N	0.786	pfam_Haem_peroxidase_animal,superfamily_Haem_peroxidase,pfscan_Haem_peroxidase_animal	pfam_Haem_peroxidase_animal,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_VWF_C,pfam_Leu-rich_rpt,superfamily_Haem_peroxidase,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,smart_VWF_C,prints_Haem_peroxidase_animal_subgr,pfscan_VWF_C,pfscan_Haem_peroxidase_animal,pfscan_Ig-like	-	no_errors	PXDNL	HGNC	ENSG00000147485	14	0	0.00	26	15	36.59	-	-	-
RALY	0	genome.wustl.edu	37	20	32664866	32664866	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	20	32664866	32664866	G	A	SNP	RALY	ENST00000246194	human	ensembl	69_37n	+1	known	missense	c.691	p.G231S	0.001	pirsf_hnRNP_C_Raly	pfam_RRM_dom,smart_RRM_dom,pirsf_hnRNP_C_Raly,pfscan_RRM_dom	-	no_errors	RALY	HGNC	ENSG00000125970	8	0	0.00	9	5	35.71	-	-	-
RDH14	0	genome.wustl.edu	37	2	18736520	18736520	+	Missense_Mutation	SNP	C	C	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	18736520	18736520	C	G	SNP	RDH14	ENST00000381249	human	ensembl	69_37n	-1	known	missense	c.948	p.M316I	1.000	NULL	pfam_DH_sc/Rdtase_SDR,pfam_PKS_KR,pfam_Epimerase_deHydtase,prints_Glc/ribitol_DH,prints_DH_sc/Rdtase_SDR	-	no_errors	RDH14	HGNC	ENSG00000240857	80	0	0.00	108	52	32.30	-	-	-
RFC1	0	genome.wustl.edu	37	4	39301747	39301747	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	39301747	39301747	T	C	SNP	RFC1	ENST00000381897	human	ensembl	69_37n	-1	known	missense	c.2705	p.K902R	1.000	superfamily_DNA_pol3_clamp-load_cplx_C,pirsf_DNA_replication_fac_C_lsu	pfam_DNA_replication_fac_RFC1_C,pfam_BRCT_dom,pfam_ATPase_AAA_core,superfamily_DNA_pol3_clamp-load_cplx_C,superfamily_BRCT_dom,smart_BRCT_dom,smart_AAA+_ATPase,pirsf_DNA_replication_fac_C_lsu,pfscan_BRCT_dom	-	no_errors	RFC1	HGNC	ENSG00000035928	59	0	0.00	43	45	51.14	-	-	-
RYR2	0	genome.wustl.edu	37	1	237806646	237806646	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	237806646	237806646	G	A	SNP	RYR2	ENST00000360064	human	ensembl	69_37n	+1	known	missense	c.7235	p.G2412E	1.000	NULL	pfam_Ca-rel_channel,pfam_Ryanodine_rcpt,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR2	HGNC	ENSG00000198626	86	0	0.00	209	44	17.32	-	-	-
SCN7A	0	genome.wustl.edu	37	2	167284443	167284443	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	2	167284443	167284443	C	T	SNP	SCN7A	ENST00000409855	human	ensembl	69_37n	-1	known	missense	c.2708	p.R903H	0.000	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_Na_trans_assoc,prints_Na_channel_asu	-	no_errors	SCN7A	HGNC	ENSG00000136546	85	0	0.00	187	68	26.56	-	-	-
SLC38A3	0	genome.wustl.edu	37	3	50252106	50252106	+	RNA	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	3	50252106	50252106	G	A	SNP	SLC38A3	ENST00000414604	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338	54	0	0.00	67	28	29.47	-	-	-
SYBU	0	genome.wustl.edu	37	8	110655166	110655166	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	8	110655166	110655166	A	G	SNP	SYBU	ENST00000399066	human	ensembl	69_37n	-1	known	missense	c.11	p.F4S	1.000	NULL	NULL	-	no_errors	SYBU	HGNC	ENSG00000147642	34	0	0.00	122	34	21.79	-	-	-
SYNPO2	0	genome.wustl.edu	37	4	119952720	119952720	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	4	119952720	119952720	G	A	SNP	SYNPO2	ENST00000504178	human	ensembl	69_37n	+1	novel	missense	c.2644	p.A882T	0.402	NULL	superfamily_PDZ,pfscan_PDZ	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	SYNPO2	HGNC	ENSG00000172403	37	0	0.00	37	13	25.49	-	-	-
TP53	0	genome.wustl.edu	37	17	7577061	7577064	+	Frame_Shift_Del	DEL	CTTT	CTTT	-			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	CTTT	CTTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	17	7577061	7577064	CTTT	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.877_874	p.K292fs	0.324:0.411:0.904:0.987	NULL	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	86	0	0.00	35	73	65.77	-	-	-
USP29	0	genome.wustl.edu	37	19	57641241	57641241	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	19	57641241	57641241	G	T	SNP	USP29	ENST00000254181	human	ensembl	69_37n	+1	known	nonsense	c.1198	p.E400*	0.000	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP29	HGNC	ENSG00000131864	27	0	0.00	34	32	48.48	-	-	-
VPS13D	0	genome.wustl.edu	37	1	12368636	12368636	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	1	12368636	12368636	A	T	SNP	VPS13D	ENST00000011700	human	ensembl	69_37n	+1	novel	missense	c.3056	p.Q1019L	0.988	NULL	pfam_VPSAP,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	VPS13D	HGNC	ENSG00000048707	47	0	0.00	56	27	32.53	-	-	-
ZBTB9	0	genome.wustl.edu	37	6	33424124	33424124	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PH-01A-11D-A14K-09	TCGA-EW-A1PH-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ce860c6f-c87a-4a45-92df-ca34bfb2e8b2	28823da8-d29d-48c6-ae45-0ea4cdc23f52	6	33424124	33424124	G	A	SNP	ZBTB9	ENST00000395064	human	ensembl	69_37n	+1	known	missense	c.1247	p.C416Y	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZBTB9	HGNC	ENSG00000213588	23	0	0.00	39	9	18.75	-	-	-
