Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
BDKRB1	0	genome.wustl.edu	37	14	96730636	96730636	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	14	96730636	96730636	T	C	SNP	BDKRB1	ENST00000216629	human	ensembl	69_37n	+1	known	missense	c.617	p.L206S	0.024	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,prints_BK_rcpt_B1,prints_7TM_GPCR_Rhodpsn,prints_Brdyknn_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	BDKRB1	HGNC	ENSG00000100739	62	0	0.00	51	13	20.31	-	-	-
CACNA1S	0	genome.wustl.edu	37	1	201030401	201030401	+	Silent	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	1	201030401	201030401	C	T	SNP	CACNA1S	ENST00000362061	human	ensembl	69_37n	-1	known	silent	c.3249	p.K1083	1.000	prints_VDCCAlpha1	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCCAlpha1,prints_VDCC_L_a1su,prints_VDCC_L_a1ssu	-	no_errors	CACNA1S	HGNC	ENSG00000081248	125	0	0.00	139	55	28.35	-	-	-
CDH3	0	genome.wustl.edu	37	16	68725808	68725808	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	16	68725808	68725808	G	T	SNP	CDH3	ENST00000264012	human	ensembl	69_37n	+1	known	missense	c.1981	p.G661W	1.000	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH3	HGNC	ENSG00000062038	38	0	0.00	29	4	12.12	-	-	-
CLTC	0	genome.wustl.edu	37	17	57725727	57725727	+	Missense_Mutation	SNP	T	T	C			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	17	57725727	57725727	T	C	SNP	CLTC	ENST00000269122	human	ensembl	69_37n	+1	known	missense	c.646	p.F216L	1.000	pfam_Clathrin_H-chain_propeller_rpt,superfamily_Clathrin_H-chain_propeller_N,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTC	HGNC	ENSG00000141367	106	0	0.00	67	10	12.99	-	-	-
COL4A3	0	genome.wustl.edu	37	2	228141148	228141148	+	Nonsense_Mutation	SNP	G	G	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	2	228141148	228141148	G	T	SNP	COL4A3	ENST00000396578	human	ensembl	69_37n	+1	known	nonsense	c.1975	p.G659*	1.000	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A3	HGNC	ENSG00000169031	51	0	0.00	27	5	15.62	-	-	-
CRLF1	0	genome.wustl.edu	37	19	18705148	18705148	+	Missense_Mutation	SNP	A	A	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	18705148	18705148	A	T	SNP	CRLF1	ENST00000392386	human	ensembl	69_37n	-1	known	missense	c.1121	p.L374H	0.991	NULL	pfam_Fibronectin_type3,pfam_Growth/epo_recpt_lig-bind,pfam_IL6_recept-bd,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	-	no_errors	CRLF1	HGNC	ENSG00000006016	9	0	0.00	19	6	24.00	-	-	-
EIF4ENIF1	0	genome.wustl.edu	37	22	31851272	31851272	+	Nonsense_Mutation	SNP	G	G	A			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	22	31851272	31851272	G	A	SNP	EIF4ENIF1	ENST00000330125	human	ensembl	69_37n	-1	known	nonsense	c.1129	p.Q377*	1.000	pfam_eIF4E_transporter	pfam_eIF4E_transporter	-	no_errors	EIF4ENIF1	HGNC	ENSG00000184708	104	0	0.00	60	18	23.08	-	-	-
FBN3	0	genome.wustl.edu	37	19	8131020	8131020	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	8131020	8131020	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.8213	p.R2738H	1.000	pirsf_Fibrillin	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	19	0	0.00	16	5	23.81	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	57	0	0	58	10	14.29	-	-	-
GUCY1A3	0	genome.wustl.edu	37	4	156629403	156629403	+	Silent	SNP	A	A	G			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	4	156629403	156629403	A	G	SNP	GUCY1A3	ENST00000296518	human	ensembl	69_37n	+1	known	silent	c.333	p.R111	1.000	pfam_Heme_NO-bd,superfamily_NO_sig/Golgi_transp_ligand-bd	pfam_A/G_cyclase,pfam_Haem_no_assoc-bd,pfam_Heme_NO-bd,superfamily_A/G_cyclase,superfamily_NO_sig/Golgi_transp_ligand-bd,smart_A/G_cyclase,pfscan_A/G_cyclase	-	no_errors	GUCY1A3	HGNC	ENSG00000164116	38	0	0.00	28	6	17.65	-	-	-
HCN4	0	genome.wustl.edu	37	15	73616120	73616120	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	15	73616120	73616120	C	T	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2314	p.V772I	0.966	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	42	0	0.00	35	6	14.63	-	-	-
HMGCLL1	0	genome.wustl.edu	37	6	55441929	55441929	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	6	55441929	55441929	C	T	SNP	HMGCLL1	ENST00000398661	human	ensembl	69_37n	-1	known	missense	c.145	p.D49N	0.000	NULL	pfam_PYR_CT,pfscan_PYR_CT	-	no_errors	HMGCLL1	HGNC	ENSG00000146151	41	0	0.00	24	5	17.24	-	-	-
KIF16B	0	genome.wustl.edu	37	20	16410515	16410515	+	Missense_Mutation	SNP	T	T	G			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	20	16410515	16410515	T	G	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.1415	p.H472P	1.000	superfamily_SMAD_FHA_domain	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	74	0	0.00	53	7	11.67	-	-	-
MID1	0	genome.wustl.edu	37	X	10535215	10535215	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	X	10535215	10535215	C	T	SNP	MID1	ENST00000317552	human	ensembl	69_37n	-1	known	missense	c.373	p.D125N	1.000	smart_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,pfam_Fibronectin_type3,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Fibronectin_type3,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Fibronectin_type3,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	MID1	HGNC	ENSG00000101871	54	0	0.00	47	8	14.55	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1266862	1266862	+	Missense_Mutation	SNP	C	C	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	11	1266862	1266862	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.8761	p.R2921C	0.001	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	44	0	0.00	17	5	22.73	-	-	-
NCOR1	0	genome.wustl.edu	37	17	15989687	15989687	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	17	15989687	15989687	G	T	SNP	NCOR1	ENST00000268712	human	ensembl	69_37n	-1	known	missense	c.3086	p.P1029Q	1.000	NULL	pfam_SANT/Myb,superfamily_Homeodomain-like,smart_SANT/Myb,pfscan_Myb-like_dom	-	no_errors	NCOR1	HGNC	ENSG00000141027	151	0	0.00	102	16	13.56	-	-	-
SEC1P	0	genome.wustl.edu	37	19	49183705	49183705	+	RNA	SNP	G	G	A			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	49183705	49183705	G	A	SNP	SEC1P	ENST00000430145	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.109	-	-	-	no_errors	SEC1P	HGNC	ENSG00000232871	9	0	0.00	8	6	42.86	-	-	-
TET3	0	genome.wustl.edu	37	2	74273626	74273626	+	Silent	SNP	G	G	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	2	74273626	74273626	G	T	SNP	TET3	ENST00000409262	human	ensembl	69_37n	+1	known	silent	c.177	p.L59	1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	49	0	0.00	30	4	11.76	-	-	-
TNS3	0	genome.wustl.edu	37	7	47409188	47409188	+	Missense_Mutation	SNP	C	C	A			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	7	47409188	47409188	C	A	SNP	TNS3	ENST00000311160	human	ensembl	69_37n	-1	known	missense	c.1055	p.S352I	0.998	NULL	pfam_PTB,pfam_Tensin_phosphatase_C2-dom,pfam_SH2,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Tyr_Pase_cat,smart_SH2,smart_PTyr_interaction_dom,pfscan_SH2,pfscan_Tyr/Dual-specificity_Pase,pfscan_Phosphatase_tensin-typ,pfscan_Tensin_phosphatase_C2-dom	-	no_errors	TNS3	HGNC	ENSG00000136205	43	0	0.00	16	10	38.46	-	-	-
TULP2	0	genome.wustl.edu	37	19	49398637	49398637	+	Missense_Mutation	SNP	G	G	A			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	19	49398637	49398637	G	A	SNP	TULP2	ENST00000221399	human	ensembl	69_37n	-1	known	missense	c.335	p.P112L	0.000	NULL	pfam_Tubby_C,superfamily_Tubby_C-like,prints_Tubby_C,prints_Tubby_N	-	no_errors	TULP2	HGNC	ENSG00000104804	56	0	0.00	63	13	17.11	-	-	-
ZNF479	0	genome.wustl.edu	37	7	57188319	57188319	+	Missense_Mutation	SNP	G	G	T			TCGA-GM-A2DN-01A-11D-A17W-09	TCGA-GM-A2DN-10C-01D-A17W-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e6101e95-5296-4040-af52-0159a21e63b5	70bb3d92-770c-426e-98c5-35362229d54a	7	57188319	57188319	G	T	SNP	ZNF479	ENST00000331162	human	ensembl	69_37n	-1	known	missense	c.803	p.P268H	0.660	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF479	HGNC	ENSG00000185177	84	0	0.00	30	5	14.29	-	-	-
