Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CLCNKA	0	genome.wustl.edu	37	1	16360144	16360144	+	Silent	SNP	T	T	C			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	16360144	16360144	T	C	SNP	CLCNKA	ENST00000331433	human	ensembl	69_37n	+1	known	silent	c.2055	p.A685	0.903	NULL	pfam_Cl-channel_volt-gated,pfam_Cysta_beta_synth_core,superfamily_Cl-channel_core,smart_Cysta_beta_synth_core,prints_Cl-channel_volt-gated,prints_Cl_channel-K	-	no_errors	CLCNKA	HGNC	ENSG00000186510	51	0	0.00	34	4	10.53	-	-	-
HIST1H1A	0	genome.wustl.edu	37	6	26017768	26017768	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	6	26017768	26017768	G	T	SNP	HIST1H1A	ENST00000244573	human	ensembl	69_37n	-1	known	missense	c.193	p.L65I	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	pfam_Histone_H1/H5,smart_Histone_H1/H5,prints_Histone_H5	-	no_errors	HIST1H1A	HGNC	ENSG00000124610	94	0	0.00	63	7	10.00	-	-	-
MB21D2	0	genome.wustl.edu	37	3	192517061	192517061	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	3	192517061	192517061	G	A	SNP	MB21D2	ENST00000392452	human	ensembl	69_37n	-1	known	missense	c.590	p.S197L	0.637	NULL	pfam_Mab-21_dom	-	no_errors	MB21D2	HGNC	ENSG00000180611	87	0	0.00	57	8	12.31	-	-	-
OXCT1	0	genome.wustl.edu	37	5	41731834	41731834	+	Missense_Mutation	SNP	A	A	C			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	5	41731834	41731834	A	C	SNP	OXCT1	ENST00000196371	human	ensembl	69_37n	-1	known	missense	c.1560	p.N520K	0.997	pirsf_3-oxoacid_CoA-transferase	pfam_CoA_trans_fam_I,smart_CoA_trans_fam_I,pirsf_3-oxoacid_CoA-transferase,tigrfam_3-oxoacid_CoA-transf_B,tigrfam_3-oxoacid_CoA-transf_A	-	no_errors	OXCT1	HGNC	ENSG00000083720	39	0	0.00	27	4	12.90	-	-	-
PGS1	0	genome.wustl.edu	37	17	76395617	76395617	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	17	76395617	76395617	G	T	SNP	PGS1	ENST00000262764	human	ensembl	69_37n	+1	known	missense	c.700	p.G234C	1.000	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	pirsf_PLipase-D_PtdSer-synthase-type,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PGS1	HGNC	ENSG00000087157	45	0	0.00	35	4	10.26	-	-	-
PHC2	0	genome.wustl.edu	37	1	33789638	33789638	+	RNA	SNP	C	C	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	33789638	33789638	C	T	SNP	PHC2	ENST00000485928	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.632	-	-	-	no_errors	PHC2	HGNC	ENSG00000134686	8	0	0.00	4	6	60.00	-	-	-
PTPRZ1	0	genome.wustl.edu	37	7	121513368	121513369	+	RNA	DEL	TG	TG	-			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	7	121513368	121513369	TG	-	DEL	PTPRZ1	ENST00000471837	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors	PTPRZ1	HGNC	ENSG00000106278	14	0	0.00	3	2	40.00	-	-	-
TCHH	0	genome.wustl.edu	37	1	152083754	152083754	+	Missense_Mutation	SNP	G	G	C			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	1	152083754	152083754	G	C	SNP	TCHH	ENST00000368804	human	ensembl	69_37n	-1	known	missense	c.1939	p.L647V	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	TCHH	HGNC	ENSG00000159450	128	0	0.00	113	14	11.02	-	-	-
TIAM1	0	genome.wustl.edu	37	21	32624173	32624173	+	Silent	SNP	G	G	A			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	21	32624173	32624173	G	A	SNP	TIAM1	ENST00000286827	human	ensembl	69_37n	-1	known	silent	c.1296	p.G432	0.995	NULL	pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Raf-like_ras-bd,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_Pleckstrin_homology,smart_Raf-like_ras-bd,smart_PDZ,smart_DH-domain,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_Raf-like_ras-bd,pfscan_DH-domain	-	no_errors	TIAM1	HGNC	ENSG00000156299	62	0	0.00	48	6	11.11	-	-	-
TP53	0	genome.wustl.edu	37	17	7578393	7578393	+	Missense_Mutation	SNP	A	A	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	17	7578393	7578393	A	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.537	p.H179Q	0.699	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	33	0	0.00	14	3	17.65	-	-	-
TSPYL1	0	genome.wustl.edu	37	6	116600681	116600681	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	6	116600681	116600681	C	T	SNP	TSPYL1	ENST00000368608	human	ensembl	69_37n	-1	known	missense	c.313	p.A105T	0.000	NULL	pfam_NAP_family	-	no_errors	TSPYL1	HGNC	ENSG00000189241	59	0	0.00	36	5	12.20	-	-	-
WHSC1L1	0	genome.wustl.edu	37	8	38174774	38174774	+	RNA	SNP	G	G	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	8	38174774	38174774	G	T	SNP	WHSC1L1	ENST00000525081	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	WHSC1L1	HGNC	ENSG00000147548	32	0	0.00	18	3	14.29	-	-	-
ZDHHC11	0	genome.wustl.edu	37	5	833915	833915	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A5RY-01A-21D-A28B-09	TCGA-OL-A5RY-10A-01D-A28E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	476465ea-63a7-49d0-8b85-25e02d69b78d	90710e07-11e4-4116-a955-3a58f616acdf	5	833915	833915	G	T	SNP	ZDHHC11	ENST00000283441	human	ensembl	69_37n	-1	known	missense	c.908	p.A303D	0.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC11	HGNC	ENSG00000188818	34	0	0.00	20	8	28.57	-	-	-
