Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NPHP4	261734	broad.mit.edu	37	1	5937208	5937208	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:5937208G>A	uc001alq.1	-	20	3028	c.2762C>T	c.(2761-2763)TCT>TTT	p.S921F	NPHP4_uc001als.1_RNA|NPHP4_uc009vlt.1_RNA|NPHP4_uc001alt.1_RNA	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	921					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CAGGCGCACAGACCTCATCCG	0.667000													8	19					0	0	0.010729	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12856067	12856067	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:12856067G>T	uc001auj.1	+	4	1450	c.1347G>T	c.(1345-1347)AGG>AGT	p.R449S		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	449											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AGCCCAAGAGGATCTTCATTG	0.562000													16	352					1.02788e-11	1.28756e-11	0.004990	1	0
PTPRU	10076	broad.mit.edu	37	1	29644356	29644356	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:29644356C>T	uc001bru.2	+	26	3750	c.3640C>T	c.(3640-3642)CCG>TCG	p.P1214S	PTPRU_uc001brv.2_Missense_Mutation_p.P1210S|PTPRU_uc001brw.2_Missense_Mutation_p.P1204S|PTPRU_uc009vtq.2_Missense_Mutation_p.P1210S|PTPRU_uc009vtr.2_Missense_Mutation_p.P1201S|PTPRU_uc001brx.2_5'Flank	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	1214	Tyrosine-protein phosphatase 2.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GGACGTCCTGCCGCCCGACCG	0.632000													4	119					0	0	0.014758	0	0
TIE1	7075	broad.mit.edu	37	1	43779034	43779034	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:43779034G>A	uc001ciu.2	+	13	2235	c.2156G>A	c.(2155-2157)CGG>CAG	p.R719Q	TIE1_uc010okd.1_Missense_Mutation_p.R719Q|TIE1_uc010oke.1_Missense_Mutation_p.R674Q|TIE1_uc009vwq.2_Missense_Mutation_p.R675Q|TIE1_uc010okf.1_Missense_Mutation_p.R364Q|TIE1_uc010okg.1_Missense_Mutation_p.R364Q	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	719	Fibronectin type-III 3.|Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCCGCATGCGGGCCAGCATT	0.647000													44	156					0	0	0.014410	0	0
MNDA	4332	broad.mit.edu	37	1	158815714	158815714	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:158815714C>G	uc001fsz.1	+	5	1108	c.908C>G	c.(907-909)GCA>GGA	p.A303G		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	303	HIN-200.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					ATCGAAATAGCAAATAAAACT	0.333000													36	134					0	0	0.017118	0	0
ASTN1	460	broad.mit.edu	37	1	176863936	176863936	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:176863936C>T	uc001glc.2	-	17	2914	c.2702G>A	c.(2701-2703)CGG>CAG	p.R901Q	ASTN1_uc001glb.1_Missense_Mutation_p.R901Q|ASTN1_uc001gld.1_Missense_Mutation_p.R901Q	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	909					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GTCTCTTTCCCGCTCCTCAGA	0.532000													52	171					0	0	0.014410	0	0
CACNA1E	777	broad.mit.edu	37	1	181741311	181741311	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:181741311G>A	uc001gow.2	+	37	5248	c.5083G>A	c.(5083-5085)GGC>AGC	p.G1695S	CACNA1E_uc009wxs.2_Missense_Mutation_p.G1583S|CACNA1E_uc001gox.1_Missense_Mutation_p.G921S|CACNA1E_uc009wxt.2_Missense_Mutation_p.G921S	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1695	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CGAACGCTGCGGCACCGATCT	0.552000													28	258					0	0	0.007291	0	0
CNTN2	6900	broad.mit.edu	37	1	205033503	205033503	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:205033503C>T	uc001hbr.2	+	11	1563	c.1294C>T	c.(1294-1296)CGC>TGC	p.R432C	CNTN2_uc001hbq.1_Missense_Mutation_p.R323C|CNTN2_uc001hbs.2_Missense_Mutation_p.R220C	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	432	Ig-like C2-type 5.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			CCCCGCGGCCCGCGGGGGAGA	0.607000													6	419					0	0	0.001168	0	0
DIP2C	22982	broad.mit.edu	37	10	436803	436803	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:436803C>T	uc001ifp.2	-	11	1351	c.1261G>A	c.(1261-1263)GAC>AAC	p.D421N	DIP2C_uc009xhj.1_Missense_Mutation_p.D117N	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	421						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTCCCTGCGTCCTGAGAGGGC	0.512000													5	170					0	0	0.014758	0	0
ARMC3	219681	broad.mit.edu	37	10	23287294	23287294	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:23287294G>A	uc001irm.3	+	11	1476	c.1393G>A	c.(1393-1395)GCA>ACA	p.A465T	ARMC3_uc010qcv.1_Missense_Mutation_p.A465T|ARMC3_uc010qcw.1_Missense_Mutation_p.A202T	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	465	ARM 11.						binding				0						CGCTGTCACCGCAACTGCGTG	0.483000													14	16					0	0	0.004007	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24874007	24874007	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:24874007C>G	uc001isb.2	-	26	5698	c.5211G>C	c.(5209-5211)ATG>ATC	p.M1737I	ARHGAP21_uc010qdb.1_RNA	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	1736	Interaction with CTNNA1.				signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						TTCCTTTTTTCATAACATCAA	0.408000													43	172					0	0	0.014410	0	0
PTCHD3	374308	broad.mit.edu	37	10	27702350	27702350	+	Missense_Mutation	SNP	G	A	A	rs147881350		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:27702350G>A	uc001itu.2	-	1	948	c.830C>T	c.(829-831)ACG>ATG	p.T277M		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	277					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CAGGTTGAGCGTTTTGTTCAC	0.612000													19	76					0	0	0.010504	0	0
WAC	51322	broad.mit.edu	37	10	28824542	28824542	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:28824542G>A	uc001iuf.2	+	3	215	c.130G>A	c.(130-132)GAA>AAA	p.E44K	WAC_uc001iud.2_5'UTR|WAC_uc001iue.2_5'UTR|WAC_uc009xlb.2_5'UTR|WAC_uc001iug.2_Missense_Mutation_p.E44K|WAC_uc001iuh.2_5'UTR	NM_016628	NP_057712	Q9BTA9	WAC_HUMAN	WW domain-containing adapter with a coiled-coil	44					cell cycle checkpoint|histone H2B conserved C-terminal lysine ubiquitination|histone monoubiquitination|positive regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	nuclear speck	chromatin binding|RNA polymerase II core binding			large_intestine(1)|ovary(1)	2						TCACAGACATGAAAAGATGCG	0.433000													26	104					0	0	0.021523	0	0
JMJD1C	221037	broad.mit.edu	37	10	64944425	64944425	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:64944425G>A	uc001jmn.2	-	21	7204	c.6904C>T	c.(6904-6906)CAT>TAT	p.H2302Y	JMJD1C_uc001jml.2_Missense_Mutation_p.H2065Y|JMJD1C_uc001jmm.2_Missense_Mutation_p.H2014Y|JMJD1C_uc010qiq.1_Missense_Mutation_p.H2120Y|JMJD1C_uc009xpi.2_Missense_Mutation_p.H2120Y|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc001jmo.2_Missense_Mutation_p.H209Y	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	2302	JmjC.				blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					CCTGGCAAATGAGAGGCCAAA	0.378000													31	96					0	0	0.012213	0	0
LRIT2	340745	broad.mit.edu	37	10	85984344	85984344	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:85984344G>T	uc001kcy.2	-	2	645	c.637C>A	c.(637-639)CAG>AAG	p.Q213K	LRIT2_uc010qmc.1_Missense_Mutation_p.Q213K	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	213	LRRCT.					integral to membrane				ovary(2)	2						TTGACAAACTGGACAAGCCCC	0.557000													26	73					1.33986e-20	1.73308e-20	0.004656	1	0
SORCS1	114815	broad.mit.edu	37	10	108432647	108432647	+	Silent	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:108432647T>C	uc001kym.2	-	15	2045	c.2037A>G	c.(2035-2037)AGA>AGG	p.R679R	SORCS1_uc001kyl.2_Silent_p.R679R|SORCS1_uc009xxs.2_Silent_p.R679R|SORCS1_uc001kyn.1_Silent_p.R679R|SORCS1_uc001kyo.2_Silent_p.R679R	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	679	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		GCTGCCAAGGTCTGTAGTCCT	0.502000													5	65					0	0	0.014758	0	0
ADD3	120	broad.mit.edu	37	10	111881894	111881894	+	Silent	SNP	A	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:111881894A>G	uc001kyt.3	+	10	1301	c.987A>G	c.(985-987)GGA>GGG	p.G329G	ADD3_uc001kys.3_Silent_p.G329G|ADD3_uc001kyu.2_Silent_p.G329G|ADD3_uc001kyv.2_Silent_p.G329G|ADD3_uc001kyw.2_Silent_p.G329G|ADD3_uc001kyx.2_5'Flank	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	329						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GTGCAGGTGGAGTAGACAATC	0.413000													31	112					0	0	0.017118	0	0
SVIP	258010	broad.mit.edu	37	11	22849396	22849396	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr11:22849396C>A	uc001mqp.3	-	2	167	c.79G>T	c.(79-81)GAG>TAG	p.E27*	uc001mqq.1_5'Flank	NM_148893	NP_683691	Q8NHG7	SVIP_HUMAN	small VCP/p97-interacting protein	27						Golgi membrane|plasma membrane|smooth endoplasmic reticulum membrane					0						TCTGCAGCCTCTGCAAGCTTT	0.269000													12	44					9.16793e-09	1.12473e-08	0.004990	1	0
SIK2	23235	broad.mit.edu	37	11	111571629	111571629	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr11:111571629C>G	uc001plt.2	+	5	616	c.498C>G	c.(496-498)TTC>TTG	p.F166L		NM_015191	NP_056006	Q9H0K1	SIK2_HUMAN	SNF1-like kinase 2	166	Protein kinase.				intracellular protein kinase cascade|regulation of insulin receptor signaling pathway	Golgi apparatus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(2)|skin(1)	3						TTGGAAATTTCTTTAAAAGTG	0.398000													25	52					0	0	0.010818	0	0
ATF7IP	55729	broad.mit.edu	37	12	14577421	14577421	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:14577421C>G	uc001rbw.2	+	2	730	c.572C>G	c.(571-573)TCT>TGT	p.S191C	ATF7IP_uc010shs.1_Missense_Mutation_p.S191C|ATF7IP_uc001rbu.2_Missense_Mutation_p.S191C|ATF7IP_uc001rbv.1_Missense_Mutation_p.S191C|ATF7IP_uc001rbx.2_Missense_Mutation_p.S191C|ATF7IP_uc010sht.1_Missense_Mutation_p.S191C|ATF7IP_uc001rby.3_Missense_Mutation_p.S191C|ATF7IP_uc001rbz.1_Missense_Mutation_p.S191C|ATF7IP_uc001rca.2_Missense_Mutation_p.S191C|ATF7IP_uc001rcb.2_5'Flank	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	191					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						GATGCCACCTCTGGTGATGCC	0.562000													48	137					0	0	0.014410	0	0
OVCH1	341350	broad.mit.edu	37	12	29649141	29649141	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:29649141G>A	uc001rix.1	-	3	254	c.254C>T	c.(253-255)GCA>GTA	p.A85V		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	85	Peptidase S1 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					GCAGTGTGCTGCTGTAACAAC	0.463000													5	10					0	0	0.003080	0	0
PFKM	5213	broad.mit.edu	37	12	48528576	48528576	+	Silent	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:48528576C>T	uc001rrc.2	+	8	881	c.711C>T	c.(709-711)GAC>GAT	p.D237D	PFKM_uc001rra.1_Translation_Start_Site|PFKM_uc001rrb.1_Silent_p.D308D|PFKM_uc001rrd.2_Translation_Start_Site|PFKM_uc001rre.1_Silent_p.D237D|PFKM_uc001rrg.1_Silent_p.D237D	NM_000289	NP_000280	P08237	K6PF_HUMAN	phosphofructokinase, muscle	237					fructose 6-phosphate metabolic process|glycolysis|muscle cell homeostasis	6-phosphofructokinase complex|apical plasma membrane	6-phosphofructokinase activity|ATP binding|identical protein binding|kinase binding|metal ion binding|protein C-terminus binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4						CACCAGATGACGACTGGGAGG	0.512000													31	81					0	0	0.013726	0	0
KCNH3	23416	broad.mit.edu	37	12	49934750	49934750	+	Missense_Mutation	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:49934750T>C	uc001ruh.1	+	2	405	c.145T>C	c.(145-147)TTC>CTC	p.F49L	KCNH3_uc010smj.1_5'UTR	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	49	Cytoplasmic (Potential).|PAS.				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						CTCTGATGGCTTCTGTGACCT	0.622000													3	102					0	0	0.004672	0	0
AMHR2	269	broad.mit.edu	37	12	53824966	53824966	+	Silent	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:53824966T>C	uc001scx.1	+	11	1509	c.1431T>C	c.(1429-1431)CCT>CCC	p.P477P	AMHR2_uc009zmy.1_Missense_Mutation_p.L476P	NM_020547	NP_065434	Q16671	AMHR2_HUMAN	anti-Mullerian hormone receptor, type II isoform	477	Cytoplasmic (Potential).|Protein kinase.				Mullerian duct regression		ATP binding|hormone binding|metal ion binding			ovary(1)|skin(1)	2					Adenosine triphosphate(DB00171)	CCCAGGACCCTGATGGGCTGA	0.582000									Persistant_Mullerian_Duct_Syndrome_(type_I_and_II)				4	206					0	0	0.009096	0	0
ERP29	10961	broad.mit.edu	37	12	112460369	112460369	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:112460369G>A	uc001ttk.1	+	3	817	c.699G>A	c.(697-699)ATG>ATA	p.M233I	ERP29_uc001ttl.1_3'UTR	NM_006817	NP_006808	P30040	ERP29_HUMAN	endoplasmic reticulum protein 29 isoform 1	233					intracellular protein transport|protein folding|protein secretion	endoplasmic reticulum lumen|melanosome	protein disulfide isomerase activity				0						AGAACAAGATGAGTGACGGGA	0.507000													57	133					0	0	0.014410	0	0
TMEM132D	121256	broad.mit.edu	37	12	130015677	130015677	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:130015677G>A	uc009zyl.1	-	3	1370	c.1042C>T	c.(1042-1044)CGC>TGC	p.R348C		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	348	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TAATCCGTGCGCTCCTTGACA	0.527000													5	61					0	0	0.014758	0	0
CPB2	1361	broad.mit.edu	37	13	46658397	46658397	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr13:46658397C>T	uc001vaw.2	-	3	299	c.232G>A	c.(232-234)GAC>AAC	p.D78N	uc001vau.1_Intron|uc001vav.1_Intron|CPB2_uc001vax.2_Missense_Mutation_p.D78N	NM_001872	NP_001863	Q96IY4	CBPB2_HUMAN	plasma carboxypeptidase B2 isoform a	78					blood coagulation|fibrinolysis|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(96;4.21e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|all_neural(104;0.235)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.44e-05)		TTCACATTGTCGACATCAGAT	0.388000													39	95					0	0	0.006999	0	0
DIAPH3	81624	broad.mit.edu	37	13	60545227	60545227	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr13:60545227G>A	uc001vht.2	-	16	1937	c.1718C>T	c.(1717-1719)TCA>TTA	p.S573L	DIAPH3_uc001vhu.2_Missense_Mutation_p.S310L|DIAPH3_uc001vhv.2_Missense_Mutation_p.S151L	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	573	FH1.|Pro-rich.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		AGGAAGTGCTGAGTGGCCAGT	0.537000													3	24					0	0	0.004672	0	0
RNF219	79596	broad.mit.edu	37	13	79189884	79189884	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr13:79189884G>C	uc001vkw.1	-	6	2071	c.2012C>G	c.(2011-2013)TCT>TGT	p.S671C	uc001vku.1_RNA|RNF219_uc010afb.1_Missense_Mutation_p.S481C|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	671	Ser-rich.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		CTTAAACAAAGATGACCCAAA	0.403000													51	105					0	0	0.014410	0	0
NALCN	259232	broad.mit.edu	37	13	101728269	101728269	+	Silent	SNP	G	A	A	rs143218624		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr13:101728269G>A	uc001vox.1	-	35	4098	c.3909C>T	c.(3907-3909)GGC>GGT	p.G1303G		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1303	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TCACACAAGCGCCCATCATGT	0.318000													46	116					0	0	0.014410	0	0
ARID4A	5926	broad.mit.edu	37	14	58827643	58827643	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr14:58827643G>A	uc001xdp.2	+	19	2217	c.1963G>A	c.(1963-1965)GAA>AAA	p.E655K	ARID4A_uc001xdo.2_Missense_Mutation_p.E655K|ARID4A_uc001xdq.2_Missense_Mutation_p.E655K|ARID4A_uc010apg.1_Missense_Mutation_p.E333K	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	655					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						TGAAAAGGACGAAAAGAGAGA	0.393000													5	103					0	0	0.014758	0	0
RBM25	58517	broad.mit.edu	37	14	73566412	73566412	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr14:73566412G>C	uc001xno.2	+	9	1029	c.821G>C	c.(820-822)AGA>ACA	p.R274T	RBM25_uc001xnn.3_Missense_Mutation_p.R274T|RBM25_uc010ttu.1_Missense_Mutation_p.R274T|RBM25_uc001xnp.2_Missense_Mutation_p.R69T	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	274					apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		GAAGACAAAAGAGACCTGATA	0.353000													32	131					0	0	0.012213	0	0
Unknown	0	broad.mit.edu	37	15	20170018	20170018	+	IGR	SNP	C	G	G	rs140304162	by1000genomes	TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:20170018C>G								None (None upstream) : GOLGA6L6 (567076 downstream)																							GGTGACTCTGCCCTGGAACTT	0.547000													4	197					0	0	0.014758	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205094	23205094	+	RNA	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:23205094G>A	uc001yvg.2	-	2		c.701C>T			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						AGTACTGGAAGAACGTGGTTG	0.373000													3	21					0	0	0.004672	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205098	23205098	+	RNA	SNP	G	A	A	rs146035894	by1000genomes	TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:23205098G>A	uc001yvg.2	-	2		c.697C>T			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						CTGGAAGAACGTGGTTGCCAC	0.373000													3	20					0	0	0.004672	0	0
WHAMML1	339005	broad.mit.edu	37	15	23205108	23205108	+	RNA	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:23205108C>T	uc001yvg.2	-	2		c.687G>A			WHAMML1_uc010ayc.2_RNA|WHAMML1_uc010ayd.2_RNA|WHAMML1_uc010aye.1_RNA	NR_003521				Homo sapiens mRNA; cDNA DKFZp313L2232 (from clone DKFZp313L2232).												0						GTGGTTGCCACGGTAACTAAT	0.393000													3	19					0	0	0.004672	0	0
COPS2	9318	broad.mit.edu	37	15	49420152	49420152	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:49420152C>T	uc001zxf.2	-	13	1406	c.1327G>A	c.(1327-1329)GCT>ACT	p.A443T	COPS2_uc001zxh.2_Missense_Mutation_p.A450T|COPS2_uc010ufa.1_Missense_Mutation_p.A379T	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	443					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		CTCTGTTAAGCCAGTTTACTG	0.428000													14	126					0	0	0.004007	0	0
MYO5A	4644	broad.mit.edu	37	15	52664329	52664329	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:52664329C>G	uc002aby.2	-	21	3053	c.2809G>C	c.(2809-2811)GAT>CAT	p.D937H	MYO5A_uc002abx.3_Missense_Mutation_p.D937H|MYO5A_uc010uge.1_Missense_Mutation_p.D806H	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	937	Potential.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		ACCTGCTCATCAACTTTGCGC	0.458000													16	127					0	0	0.004990	0	0
PLEKHO2	80301	broad.mit.edu	37	15	65157935	65157935	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr15:65157935G>A	uc002anv.2	+	6	1455	c.1321G>A	c.(1321-1323)GAA>AAA	p.E441K	PLEKHO2_uc010bgz.2_Missense_Mutation_p.E117K|PLEKHO2_uc002anw.2_Missense_Mutation_p.E391K	NM_025201	NP_079477	Q8TD55	PKHO2_HUMAN	pleckstrin homology domain containing, family O	441	Potential.									ovary(1)|lung(1)	2						TGTTAGTGCCGAAACATTGCT	0.602000													33	49					0	0	0.017118	0	0
GLIS2	84662	broad.mit.edu	37	16	4383433	4383433	+	Silent	SNP	A	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr16:4383433A>G	uc002cwc.1	+	2	315	c.258A>G	c.(256-258)CCA>CCG	p.P86P		NM_032575	NP_115964	Q9BZE0	GLIS2_HUMAN	GLIS family zinc finger 2	86	Transcription activation (By similarity).|Interaction with CTNND1 (By similarity).				cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nervous system development	cytoplasm|nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|transcription regulatory region DNA binding|zinc ion binding				0						TGTCACCACCATCTGGGCTGG	0.657000													11	47					0	0	0.010729	0	0
VWA3A	146177	broad.mit.edu	37	16	22122307	22122307	+	Silent	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr16:22122307C>T	uc010vbq.1	+	8	777	c.681C>T	c.(679-681)AGC>AGT	p.S227S	VWA3A_uc010bxc.2_Silent_p.S214S	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	227						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TGGAAGTCAGCGCCTCCACGT	0.522000													3	28					0	0	0.014758	0	0
NETO2	81831	broad.mit.edu	37	16	47162279	47162279	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr16:47162279C>G	uc002eer.1	-	4	823	c.438G>C	c.(436-438)GAG>GAC	p.E146D	NETO2_uc010vgf.1_Missense_Mutation_p.E10D|NETO2_uc002ees.1_Missense_Mutation_p.E146D	NM_018092	NP_060562	Q8NC67	NETO2_HUMAN	neuropilin- and tolloid-like protein 2	146	Extracellular (Potential).|CUB 1.					integral to membrane	receptor activity				0		all_cancers(37;0.00114)|all_lung(18;0.00432)|Lung NSC(13;0.0384)|Breast(268;0.174)				GTCCTTCAAGCTCTTCATCAG	0.373000										HNSCC(25;0.065)			4	189					0	0	0.009096	0	0
TAT	6898	broad.mit.edu	37	16	71605524	71605524	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr16:71605524C>G	uc002fap.2	-	7	843	c.744G>C	c.(742-744)GAG>GAC	p.E248D		NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	248					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	CTCCATAGATCTCATCAGCTA	0.363000													23	78					0	0	0.021523	0	0
SARM1	23098	broad.mit.edu	37	17	26723045	26723045	+	Missense_Mutation	SNP	A	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:26723045A>T	uc010crl.1	+	11	2112	c.2045A>T	c.(2044-2046)AAG>ATG	p.K682M	SARM1_uc010waj.1_RNA|SARM1_uc002hbe.1_Missense_Mutation_p.K226M|SLC46A1_uc002hbf.1_3'UTR|SLC46A1_uc002hbg.1_3'UTR	NM_015077	NP_055892	Q6SZW1	SARM1_HUMAN	sterile alpha and TIR motif containing 1	682					innate immune response	cytoplasm|intrinsic to membrane	binding|transmembrane receptor activity				0	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.154)		AACGGTATCAAGTGAGCCCCA	0.587000													8	173					0	0	0.004482	0	0
EFCAB5	374786	broad.mit.edu	37	17	28435000	28435000	+	Silent	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:28435000T>C	uc002het.2	+	23	4662	c.4470T>C	c.(4468-4470)TAT>TAC	p.Y1490Y	EFCAB5_uc010cse.2_Silent_p.Y1245Y|EFCAB5_uc010csf.2_Silent_p.Y841Y	NM_198529	NP_940931	A4FU69	EFCB5_HUMAN	EF-hand calcium binding domain 5 isoform a	1490							calcium ion binding			ovary(1)|skin(1)	2						CTGACAATTATATGTATGCAA	0.368000													3	113					0	0	0.009096	0	0
ZNF830	91603	broad.mit.edu	37	17	33288808	33288808	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:33288808C>T	uc002hih.3	+	1	260	c.223C>T	c.(223-225)CAC>TAC	p.H75Y	CCT6B_uc002hig.2_5'Flank|CCT6B_uc010ctg.2_5'Flank|CCT6B_uc010wcc.1_5'Flank	NM_052857	NP_443089	Q96NB3	ZN830_HUMAN	coiled-coil domain containing 16	75	C2H2-type.				cell division|mitosis	cytoplasm|nucleus	metal ion binding			breast(1)	1		Ovarian(249;0.17)				GGGAAAGCAGCACCGAGAGAA	0.597000													24	107					0	0	0.018920	0	0
C17orf66	256957	broad.mit.edu	37	17	34182754	34182754	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:34182754C>T	uc002hke.1	-	14	1428	c.1279G>A	c.(1279-1281)GGT>AGT	p.G427S	C17orf66_uc010wck.1_RNA|C17orf66_uc010wcl.1_Missense_Mutation_p.G387S	NM_152781	NP_689994	A2RTY3	CQ066_HUMAN	hypothetical protein LOC256957	427							binding			breast(2)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CCCAGGACACCCTGGCAGAGG	0.522000													10	106					0	0	0.010729	0	0
TEX2	55852	broad.mit.edu	37	17	62290374	62290374	+	Silent	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:62290374G>A	uc002jec.2	-	2	1377	c.1204C>T	c.(1204-1206)CTG>TTG	p.L402L	TEX2_uc002jed.2_Silent_p.L402L|TEX2_uc002jee.2_Silent_p.L402L	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	402					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		CATTTCTCCAGAACTAGAGAA	0.463000													36	133					0	0	0.017118	0	0
DAPK3	1613	broad.mit.edu	37	19	3964677	3964677	+	Silent	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:3964677G>A	uc002lzc.1	-	2	468	c.375C>T	c.(373-375)GAC>GAT	p.D125D	DAPK3_uc002lzb.1_5'Flank|DAPK3_uc002lzd.1_Silent_p.D125D	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	125	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTGAACGCCGTCCAGGATCT	0.637000													31	188					0	0	0.012213	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13910663	13910663	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:13910663G>A	uc002mxh.1	+	2	472	c.283G>A	c.(283-285)GAT>AAT	p.D95N		NM_023072	NP_075560	Q9H7M6	ZSWM4_HUMAN	zinc finger, SWIM-type containing 4	95							zinc ion binding			central_nervous_system(2)	2			OV - Ovarian serous cystadenocarcinoma(19;2.94e-23)|Epithelial(5;4.58e-19)			GGGCGAGCACGATGCCCGGGT	0.637000													33	106					0	0	0.017118	0	0
NR2C2AP	126382	broad.mit.edu	37	19	19313670	19313670	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:19313670C>T	uc002nlx.2	-	2	428	c.59G>A	c.(58-60)CGC>CAC	p.R20H	NR2C2AP_uc010xqq.1_5'Flank|NR2C2AP_uc002nly.2_Missense_Mutation_p.R20H	NM_176880	NP_795361	Q86WQ0	NR2CA_HUMAN	TR4 orphan receptor associated protein TRA16	20					cell adhesion|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm				ovary(1)	1			Epithelial(12;0.00235)			CCGAGTGTTGCGATTCAGCAC	0.572000													13	66					0	0	0.016723	0	0
NCAN	1463	broad.mit.edu	37	19	19327835	19327835	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:19327835G>C	uc002nlz.2	+	2	172	c.73G>C	c.(73-75)GGC>CGC	p.G25R		NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	25					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			TGGGGAACAGGGTGAGTTGGT	0.562000													6	212					0	0	0.001168	0	0
ZNF91	7644	broad.mit.edu	37	19	23544539	23544539	+	Silent	SNP	A	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:23544539A>T	uc002nre.2	-	4	1355	c.1242T>A	c.(1240-1242)GCT>GCA	p.A414A	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Silent_p.A382A	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	414	C2H2-type 10.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				ATCGATTAAAAGCTTTGCCAC	0.343000													7	68					0	0	0.006214	0	0
ZNF175	7728	broad.mit.edu	37	19	52084764	52084764	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:52084764G>A	uc002pxb.2	+	3	571	c.193G>A	c.(193-195)GCA>ACA	p.A65T		NM_007147	NP_009078	Q9Y473	ZN175_HUMAN	zinc finger protein 175	65	KRAB.				response to virus	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000426)|OV - Ovarian serous cystadenocarcinoma(262;0.0257)		CCATCTCTTCGCAGTGGGTGA	0.547000													23	60					0	0	0.014323	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55331284	55331284	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr19:55331284G>C	uc002qhk.3	+	4	535	c.472G>C	c.(472-474)GAG>CAG	p.E158Q	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR3DL1_uc010yfn.1_Missense_Mutation_p.E100Q|KIR3DL1_uc010esf.2_Missense_Mutation_p.E63Q|KIR3DL1_uc010yfo.1_Missense_Mutation_p.E100Q|KIR3DL1_uc002qhl.3_Missense_Mutation_p.E158Q	NM_013289	NP_037421	P43629	KI3L1_HUMAN	killer cell immunoglobulin-like receptor, three	158	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		TCTGCACAAAGAGGGGATCTC	0.537000													63	279					0	0	0.014410	0	0
SNRNP27	11017	broad.mit.edu	37	2	70122315	70122315	+	Missense_Mutation	SNP	C	T	T	rs143382169		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr2:70122315C>T	uc002sfw.2	+	2	151	c.124C>T	c.(124-126)CGC>TGC	p.R42C	SNRNP27_uc002sfv.2_RNA|SNRNP27_uc002sfx.2_Missense_Mutation_p.R42C	NM_006857	NP_006848	Q8WVK2	SNR27_HUMAN	small nuclear ribonucleoprotein 27kDa	42	Arg-rich.				mRNA processing|RNA splicing	nucleus	nucleic acid binding				0						GAGAAGGAGCCGCTCGCGATC	0.557000													28	83					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179404687	179404687	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr2:179404687G>A	uc010zfg.1	-	301	90625	c.90401C>T	c.(90400-90402)CCT>CTT	p.P30134L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P23829L|TTN_uc010zfi.1_Missense_Mutation_p.P23762L|TTN_uc010zfj.1_Missense_Mutation_p.P23637L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	31061							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCATAATCAGGATATTCTGG	0.368000													23	106					0	0	0.014323	0	0
GPBAR1	151306	broad.mit.edu	37	2	219128369	219128369	+	Silent	SNP	C	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr2:219128369C>A	uc010zjw.1	+	2	1169	c.922C>A	c.(922-924)CGG>AGG	p.R308R	GPBAR1_uc010zjx.1_Silent_p.R308R|GPBAR1_uc010zjy.1_Silent_p.R308R	NM_170699	NP_733800	Q8TDU6	GPBAR_HUMAN	G protein-coupled bile acid receptor 1	308	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AAGAGCCTCCCGGGACAGTCC	0.652000													21	38					2.27731e-05	2.70999e-05	0.012319	1	0
KRTAP11-1	337880	broad.mit.edu	37	21	32253432	32253432	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr21:32253432A>G	uc002yov.2	-	1	443	c.412T>C	c.(412-414)TCT>CCT	p.S138P		NM_175858	NP_787054	Q8IUC1	KR111_HUMAN	keratin associated protein 11-1	138	3.|4 X 10 AA approximate repeats.					keratin filament	structural molecule activity			pancreas(1)	1						CAGACAGTAGAGACTCCTCCC	0.592000													5	97					0	0	0.014758	0	0
CHDH	55349	broad.mit.edu	37	3	53853588	53853588	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr3:53853588G>A	uc003dgz.2	-	7	1674	c.1234C>T	c.(1234-1236)CGG>TGG	p.R412W		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	412					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	GTGGGGACCCGCCCGTGGTCA	0.612000													40	85					0	0	0.006230	0	0
MYH15	22989	broad.mit.edu	37	3	108110711	108110711	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr3:108110711C>T	uc003dxa.1	-	38	5443	c.5386G>A	c.(5386-5388)GAA>AAA	p.E1796K		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1796	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TCCATATTTTCTCTTGTCCTT	0.443000													19	358					0	0	0.008871	0	0
ZIC1	7545	broad.mit.edu	37	3	147128284	147128284	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr3:147128284G>A	uc003ewe.2	+	1	1104	c.385G>A	c.(385-387)GGG>AGG	p.G129R		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	129					behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CGGGGGCTTCGGGGGCCCACA	0.716000													15	32					0	0	0.004007	0	0
SLC7A14	57709	broad.mit.edu	37	3	170244566	170244566	+	Missense_Mutation	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr3:170244566T>C	uc003fgz.2	-	2	476	c.160A>G	c.(160-162)ACC>GCC	p.T54A	CLDN11_uc011bpt.1_Intron|uc003fha.1_Intron	NM_020949	NP_066000	Q8TBB6	S7A14_HUMAN	solute carrier family 7 (cationic amino acid	54						integral to membrane	amino acid transmembrane transporter activity			ovary(2)|upper_aerodigestive_tract(1)|liver(1)|central_nervous_system(1)	5	all_cancers(22;2.41e-22)|all_epithelial(15;4.2e-27)|all_lung(20;1.17e-16)|Lung NSC(18;4.91e-16)|Ovarian(172;0.000902)|Breast(254;0.137)		Lung(28;6.23e-13)|LUSC - Lung squamous cell carcinoma(14;1.48e-12)			TCCACTGTGGTGAGTACCTGG	0.572000													16	105					0	0	0.004007	0	0
TRPC3	7222	broad.mit.edu	37	4	122835998	122835998	+	Silent	SNP	C	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr4:122835998C>A	uc003ieg.2	-	4	1352	c.1278G>T	c.(1276-1278)GTG>GTT	p.V426V	TRPC3_uc010inr.2_Intron|TRPC3_uc003ief.2_Silent_p.V353V|TRPC3_uc011cgl.1_Silent_p.V90V	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	341	Helical; (Potential).				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						CCACGACCAGCACAACGAGAC	0.542000													21	42					3.5997e-14	4.60607e-14	0.014323	1	0
SDHAP3	728609	broad.mit.edu	37	5	1574406	1574406	+	RNA	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr5:1574406T>C	uc011cmd.1	-	3		c.440A>G			SDHAP3_uc011cme.1_RNA					Homo sapiens cDNA FLJ58919 complete cds, moderately similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial precursor (EC1.3.5.1).												0						CTCATCAATCTGCACCTGAGG	0.478000													3	26					0	0	0.004672	0	0
FBXL7	23194	broad.mit.edu	37	5	15936809	15936809	+	Silent	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr5:15936809C>T	uc003jfn.1	+	4	1471	c.990C>T	c.(988-990)AGC>AGT	p.S330S		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	330	LRR 6.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						AGGAGCTGAGCGTCAGCGACT	0.677000													4	30					0	0	0.009096	0	0
PCDHA9	9752	broad.mit.edu	37	5	140230162	140230162	+	Silent	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr5:140230162G>T	uc003lhu.2	+	1	2806	c.2082G>T	c.(2080-2082)GTG>GTT	p.V694V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lht.1_Silent_p.V694V	NM_031857	NP_114063	Q9Y5H5	PCDA9_HUMAN	protocadherin alpha 9 isoform 1 precursor	694	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			large_intestine(2)|ovary(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGACGCTGGTGGATGTCAACG	0.652000													20	70					5.03518e-11	6.24153e-11	0.007413	1	0
PCDHGA1	56114	broad.mit.edu	37	5	140710561	140710561	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr5:140710561G>T	uc003lji.1	+	1	310	c.310G>T	c.(310-312)GTG>TTG	p.V104L	PCDHGA1_uc011dan.1_Missense_Mutation_p.V104L	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	104	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCCGTGTCTCGTGAGTTTTAA	0.458000													78	151					3.78398e-24	4.94829e-24	0.014410	1	0
HIST1H2AG	8969	broad.mit.edu	37	6	27101231	27101231	+	Silent	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr6:27101231G>T	uc003niw.2	+	1	415	c.381G>T	c.(379-381)GCG>GCT	p.A127A	HIST1H2BJ_uc003niu.1_5'Flank|HIST1H2BJ_uc003niv.2_5'Flank	NM_021064	NP_066408	P0C0S8	H2A1_HUMAN	histone cluster 1, H2ag	127					nucleosome assembly	nucleosome|nucleus	DNA binding|enzyme binding				0						ACCACAAGGCGAAGGGCAAGT	0.517000													25	75					4.26978e-12	5.40536e-12	0.018920	1	0
HIST1H4L	8368	broad.mit.edu	37	6	27841106	27841106	+	Silent	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr6:27841106C>T	uc003njz.2	-	1	184	c.183G>A	c.(181-183)GTG>GTA	p.V61V	HIST1H3I_uc003njy.2_5'Flank	NM_003546	NP_003537	P62805	H4_HUMAN	histone cluster 1, H4l	61					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)|breast(1)	2						TCTCCAAAAACACTTTAAGAA	0.567000													28	78					0	0	0.004656	0	0
PPP1R10	5514	broad.mit.edu	37	6	30570171	30570171	+	Missense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr6:30570171C>T	uc003nqn.1	-	19	2807	c.2255G>A	c.(2254-2256)CGT>CAT	p.R752H	PPP1R10_uc010jsc.1_Missense_Mutation_p.R406H	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	752	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						TTCGTGAGGACGATGCCCACC	0.642000													14	319					0	0	0.020292	0	0
NCR3	259197	broad.mit.edu	37	6	31557387	31557387	+	Missense_Mutation	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr6:31557387T>C	uc003nuv.2	-	3	676	c.412A>G	c.(412-414)ACA>GCA	p.T138A	NCR3_uc003nuw.2_Missense_Mutation_p.T138A|NCR3_uc003nux.1_Missense_Mutation_p.T138A	NM_147130	NP_667341	O14931	NCTR3_HUMAN	natural cytotoxicity triggering receptor 3	138	Helical; (Potential).				cell recognition|immune response|inflammatory response|positive regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						AGGAGGACTGTACCAGCCCCT	0.582000													8	48					0	0	0.006214	0	0
COL19A1	1310	broad.mit.edu	37	6	70610139	70610139	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr6:70610139C>G	uc003pfc.1	+	4	292	c.175C>G	c.(175-177)CTA>GTA	p.L59V		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	59	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						AGGTTTTGATCTAGGAGACAG	0.294000													9	37					0	0	0.004482	0	0
CCT6A	908	broad.mit.edu	37	7	56122148	56122148	+	Silent	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:56122148C>G	uc003trl.1	+	3	452	c.288C>G	c.(286-288)GTC>GTG	p.V96V	PSPH_uc003trh.2_5'Flank|PSPH_uc003tri.2_5'Flank|PSPH_uc003trj.2_Intron|PSPH_uc003trk.1_5'Flank|CCT6A_uc003trm.1_Intron|CCT6A_uc011kcu.1_Silent_p.V65V	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	96					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTTCTAATGTCCTAATCATTG	0.388000													116	791					0	0	0.014410	0	0
CCT6A	908	broad.mit.edu	37	7	56122192	56122192	+	Missense_Mutation	SNP	C	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:56122192C>G	uc003trl.1	+	3	496	c.332C>G	c.(331-333)TCT>TGT	p.S111C	PSPH_uc003trh.2_5'Flank|PSPH_uc003tri.2_5'Flank|PSPH_uc003trj.2_Intron|PSPH_uc003trk.1_5'Flank|CCT6A_uc003trm.1_Intron|CCT6A_uc011kcu.1_Missense_Mutation_p.S80C	NM_001762	NP_001753	P40227	TCPZ_HUMAN	chaperonin containing TCP1, subunit 6A isoform	111					'de novo' posttranslational protein folding	cytosol	ATP binding|unfolded protein binding			upper_aerodigestive_tract(1)	1	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CTCTACATTTCTGAAGTATGC	0.343000													92	613					0	0	0.014410	0	0
LOC100132832	100132832	broad.mit.edu	37	7	76681112	76681112	+	RNA	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:76681112G>A	uc003ufy.2	+	5		c.1089G>A				NR_028058				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						TGCACAAATGGTTCCTCTCCT	0.512000													9	73					0	0	0.013537	0	0
DLD	1738	broad.mit.edu	37	7	107545876	107545876	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:107545876G>A	uc003vet.2	+	7	619	c.509G>A	c.(508-510)GGC>GAC	p.G170D	DLD_uc010ljm.1_RNA|DLD_uc011kmg.1_Intron|DLD_uc011kmh.1_Missense_Mutation_p.G147D|DLD_uc011kmi.1_Missense_Mutation_p.G71D	NM_000108	NP_000099	P09622	DLDH_HUMAN	dihydrolipoamide dehydrogenase precursor	170					branched chain family amino acid catabolic process|cell redox homeostasis|lysine catabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate|tricarboxylic acid cycle	mitochondrial matrix	dihydrolipoyl dehydrogenase activity			central_nervous_system(1)	1					NADH(DB00157)	GCTGATGGCGGCACTCAGGTT	0.358000													4	172					0	0	0.014758	0	0
SPAM1	6677	broad.mit.edu	37	7	123594484	123594484	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:123594484G>C	uc003vld.2	+	4	1262	c.860G>C	c.(859-861)AGA>ACA	p.R287T	SPAM1_uc003vle.2_Missense_Mutation_p.R287T|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.R287T|SPAM1_uc010lku.2_Missense_Mutation_p.R287T	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	287				R->T: Loss of activity.	binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	GAAGCCATCAGAGTTTCCAAA	0.408000													6	152					0	0	0.001168	0	0
WDR60	55112	broad.mit.edu	37	7	158715181	158715181	+	Missense_Mutation	SNP	T	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:158715181T>C	uc003woe.3	+	16	2193	c.2035T>C	c.(2035-2037)TGT>CGT	p.C679R	WDR60_uc010lqv.2_Intron|WDR60_uc010lqw.2_Missense_Mutation_p.C311R	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	679										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		ATACGTCCTCTGTGTGTGGGA	0.542000													12	71					0	0	0.013537	0	0
BAI1	575	broad.mit.edu	37	8	143614744	143614744	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr8:143614744G>A	uc003ywm.2	+	24	3670	c.3487G>A	c.(3487-3489)GCC>ACC	p.A1163T		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1163	Extracellular (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					CCGCCGCTCCGCCCTCTTCCA	0.657000													6	12					0	0	0.001984	0	0
FLJ46321	389763	broad.mit.edu	37	9	84605720	84605720	+	Missense_Mutation	SNP	G	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr9:84605720G>T	uc004amn.2	+	4	382	c.335G>T	c.(334-336)GGC>GTC	p.G112V		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	112						integral to membrane					0						AGTCCTCGGGGCCAGCATCAT	0.542000													10	28					0.000442599	0.000521478	0.006214	1	0
TEX10	54881	broad.mit.edu	37	9	103109670	103109670	+	Missense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr9:103109670G>A	uc004bas.2	-	3	414	c.199C>T	c.(199-201)CAT>TAT	p.H67Y	TEX10_uc011lvf.1_Missense_Mutation_p.H2Y|TEX10_uc011lvg.1_Missense_Mutation_p.H70Y|TEX10_uc011lvh.1_Missense_Mutation_p.H2Y|TEX10_uc004bat.2_Missense_Mutation_p.H67Y	NM_017746	NP_060216	Q9NXF1	TEX10_HUMAN	testis expressed 10 isoform 1	67						integral to membrane|MLL1 complex|nuclear membrane|nucleolus	binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(62;0.0527)		OV - Ovarian serous cystadenocarcinoma(323;0.157)		TTGTAGTGATGCATCTGTGAC	0.313000													45	204					0	0	0.010771	0	0
MAP7D2	256714	broad.mit.edu	37	X	20074854	20074854	+	Missense_Mutation	SNP	A	G	G			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:20074854A>G	uc004czr.1	-	4	447	c.428T>C	c.(427-429)CTG>CCG	p.L143P	MAP7D2_uc004czq.1_Missense_Mutation_p.L14P|MAP7D2_uc011mji.1_Missense_Mutation_p.L99P|MAP7D2_uc010nfo.1_Missense_Mutation_p.L143P|MAP7D2_uc011mjj.1_Missense_Mutation_p.L143P|MAP7D2_uc004czs.1_Missense_Mutation_p.L99P	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	143	Potential.									ovary(2)|breast(1)	3						CTTCTTTTTCAGCTCCAGCTG	0.547000													3	115					0	0	0.004672	0	0
GK	2710	broad.mit.edu	37	X	30686131	30686131	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:30686131G>A	uc004dch.3	+	3	334	c.155G>A	c.(154-156)TGG>TAG	p.W52*	GK_uc010ngj.2_Nonsense_Mutation_p.W52*|GK_uc004dci.3_Nonsense_Mutation_p.W52*|GK_uc011mjz.1_5'UTR|GK_uc011mka.1_Intron|GK_uc010ngk.2_Intron	NM_203391	NP_976325	P32189	GLPK_HUMAN	glycerol kinase isoform a	52					glycerol-3-phosphate metabolic process|triglyceride biosynthetic process	cytosol|mitochondrial outer membrane	ATP binding|glycerol kinase activity			central_nervous_system(1)	1						GTTCAAAGATGGGTGGAACAG	0.353000													19	69					0	0	0.007413	0	0
SHROOM4	57477	broad.mit.edu	37	X	50378576	50378576	+	Missense_Mutation	SNP	C	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:50378576C>A	uc004dpe.2	-	4	523	c.497G>T	c.(496-498)GGC>GTC	p.G166V	SHROOM4_uc004dpd.3_RNA|SHROOM4_uc004dpf.1_Missense_Mutation_p.G50V	NM_020717	NP_065768	Q9ULL8	SHRM4_HUMAN	shroom family member 4	166					actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			upper_aerodigestive_tract(1)	1	Ovarian(276;0.236)					GGTGGCTTGGCCTGGTTGCTC	0.552000													11	65					3.07112e-06	3.72921e-06	0.010729	1	0
ITIH5L	347365	broad.mit.edu	37	X	54823405	54823405	+	Missense_Mutation	SNP	G	C	C			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:54823405G>C	uc004dtj.2	-	2	257	c.227C>G	c.(226-228)CCT>CGT	p.P76R		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	76	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity	p.P76L(1)		lung(2)|skin(2)|ovary(1)|breast(1)	6						GGCAAGATGAGGCAGATCCAG	0.458000													4	167					0	0	0.014758	0	0
RGAG1	57529	broad.mit.edu	37	X	109696778	109696778	+	Missense_Mutation	SNP	C	T	T	rs146399635	byFrequency	TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:109696778C>T	uc004eor.1	+	3	3179	c.2933C>T	c.(2932-2934)CCG>CTG	p.P978L	RGAG1_uc011msr.1_Missense_Mutation_p.P978L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	978										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						ATGTCTATGCCGCTAATGGAA	0.498000													88	251					0	0	0.014410	0	0
HTR2C	3358	broad.mit.edu	37	X	114082600	114082600	+	Silent	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:114082600C>T	uc004epu.1	+	5	1112	c.384C>T	c.(382-384)CCC>CCT	p.P128P	HTR2C_uc010nqc.1_Silent_p.P128P|HTR2C_uc004epv.1_Silent_p.P128P	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	128	Helical; Name=3; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	ATTTGTGCCCCGTCTGGATTT	0.408000													22	262					0	0	0.014323	0	0
DOCK11	139818	broad.mit.edu	37	X	117752608	117752608	+	Missense_Mutation	SNP	A	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:117752608A>T	uc004eqp.2	+	31	3451	c.3388A>T	c.(3388-3390)AAT>TAT	p.N1130Y	DOCK11_uc004eqq.2_Missense_Mutation_p.N909Y	NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	1130					blood coagulation	cytosol	GTP binding			ovary(3)	3						TCTTCAGGACAATTATGAGAT	0.363000													7	144					0	0	0.003080	0	0
ZIC3	7547	broad.mit.edu	37	X	136649493	136649493	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:136649493C>T	uc004fak.2	+	1	1148	c.643C>T	c.(643-645)CAG>TAG	p.Q215*		NM_003413	NP_003404	O60481	ZIC3_HUMAN	zinc finger protein of the cerebellum 3	215					cell differentiation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					GGCCGGCGCTCAGTTTCCTAA	0.657000													25	77					0	0	0.004656	0	0
TMCO2	127391	broad.mit.edu	37	1	40713708	40713709	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:40713708_40713709delTC	uc001cfe.2	+	1	136_137	c.43_44delTC	c.(43-45)TCTfs	p.S15fs		NM_001008740	NP_001008740	Q7Z6W1	TMCO2_HUMAN	transmembrane and coiled-coil domains 2	15						integral to membrane				ovary(1)	1	Lung NSC(20;4.38e-06)|Ovarian(52;0.00167)|all_hematologic(146;0.0501)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;6.3e-18)			CCTCTTAGAGTCTCTCTCTCTC	0.406													9	312	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	48209043	48209044	+	IGR	INS	-	GGA	GGA	rs143555360	by1000genomes	TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:48209043_48209044insGGA								FOXD2 (302681 upstream) : SKINTL (358343 downstream)																							gtggtggtggtagtggtggtgg	0.000													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	1	94871896	94871896	+	IGR	DEL	G	-	-	rs12091363		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr1:94871896delG								ARHGAP29 (131272 upstream) : ABCD3 (12037 downstream)																							aTTTTGTTTTGTTTTTTTTTT	0.184													4	6	---	---	---	---					
Unknown	0	broad.mit.edu	37	10	26958525	26958527	+	IGR	DEL	AAG	-	-	rs138608083		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr10:26958525_26958527delAAG								LOC731789 (16143 upstream) : PDSS1 (28068 downstream)																							aagaaaagaaaagaagaaGAATC	0.133													6	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	12	80660296	80660299	+	IGR	DEL	TCTC	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr12:80660296_80660299delTCTC								PPP1R12A (331061 upstream) : PTPRQ (177827 downstream)																							TTCCTGCATTTCTCTCTCTTCCCC	0.471													7	58	---	---	---	---					
Unknown	0	broad.mit.edu	37	13	41869698	41869699	+	IGR	INS	-	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr13:41869698_41869699insA								MTRF1 (31956 upstream) : NAA16 (15642 downstream)																							taacaggtctgaaaaaaaaaag	0.000													2	4	---	---	---	---					
CCNF	899	broad.mit.edu	37	16	2498897	2498897	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr16:2498897delG	uc002cqd.1	+	11	1224	c.1136delG	c.(1135-1137)TGGfs	p.W379fs	CCNF_uc002cqe.1_Frame_Shift_Del_p.W71fs	NM_001761	NP_001752	P41002	CCNF_HUMAN	cyclin F	379	Cyclin N-terminal.				cell division|mitosis|negative regulation of centrosome duplication|protein ubiquitination|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	centriole|nucleus|SCF ubiquitin ligase complex	protein binding			central_nervous_system(1)|kidney(1)	2		Ovarian(90;0.17)				GAGGCCGTATGGCTCACGGAC	0.577													7	243	---	---	---	---					
Unknown	0	broad.mit.edu	37	17	65772734	65772734	+	IGR	DEL	A	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr17:65772734delA								NOL11 (32468 upstream) : BPTF (49046 downstream)																							actccatctcaaaaaaaaaaa	0.229													4	9	---	---	---	---					
Unknown	0	broad.mit.edu	37	2	91801335	91801336	+	IGR	INS	-	CAATG	CAATG	rs56326147		TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr2:91801335_91801336insCAATG								None (None upstream) : LOC654342 (3856 downstream)																							tcatgactaccattagctccca	0.000													5	3	---	---	---	---					
IL1B	3553	broad.mit.edu	37	2	113596306	113596308	+	5'Flank	DEL	TTC	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr2:113596306_113596308delTTC	uc002tii.1	-							NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein						activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	tttcttttctttctttctttctt	0.084													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	7	64975181	64975184	+	IGR	DEL	TTTG	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr7:64975181_64975184delTTTG								ZNF92 (109184 upstream) : INTS4L2 (137593 downstream)																							CACATTCTGATTTGTTTTTTGTAT	0.353													2	4	---	---	---	---					
Unknown	0	broad.mit.edu	37	8	8776968	8776979	+	IGR	DEL	TGTGTGTGTGTG	-	-			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chr8:8776968_8776979delTGTGTGTGTGTG								MFHAS1 (25837 upstream) : ERI1 (83335 downstream)																							catactcctttgtgtgtgtgtgtgtgtgtgtg	0.000													3	3	---	---	---	---					
Unknown	0	broad.mit.edu	37	X	1352193	1352194	+	IGR	INS	-	A	A			TCGA-DR-A0ZL-01A-11D-A10S-08	TCGA-DR-A0ZL-10A-01D-A10S-08									Somatic	Phase_I	Capture				Illumina GAIIx	6e88a707-20f2-4cee-a1f4-21dd68ea49b8	3dc49f42-9237-4a15-8ff4-f6ec60a70467	g.chrX:1352193_1352194insA								CRLF2 (20663 upstream) : CSF2RA (35499 downstream)																							aactccgtcagaaaaaaaaaag	0.054													7	5	---	---	---	---					
