Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2014_07_15 stddata Run

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
ACC	92	82	90	0	80	0	79	0	80	0	91
BLCA	412	218	266	112	352	0	267	0	267	127	130
BRCA	1097	1017	1053	19	1045	526	1058	0	1042	409	976
CESC	307	200	206	0	256	0	206	0	256	0	39
CHOL	36	0	0	0	0	0	0	0	0	0	0
COAD	460	441	438	69	445	153	432	0	406	331	154
COADREAD	631	612	600	104	610	222	595	0	549	461	223
DLBC	58	33	28	0	48	0	28	0	27	0	0
ESCA	185	127	126	32	185	0	70	0	175	0	0
GBM	613	582	571	0	420	540	160	565	0	214	290
HNSC	528	423	511	108	528	0	497	0	512	212	306
KICH	113	94	66	0	66	0	66	0	66	0	66
KIRC	537	515	527	0	535	72	518	0	506	454	417
KIRP	323	202	225	0	242	16	213	0	242	0	168
LAML	200	200	197	0	194	0	179	0	188	0	197
LGG	516	403	512	52	512	27	513	0	504	258	289
LIHC	377	176	208	0	256	0	212	0	268	0	202
LUAD	585	474	493	120	568	32	488	0	491	237	229
LUSC	504	422	490	0	492	154	489	0	467	195	178
MESO	87	21	37	0	37	0	36	0	26	0	0
OV	602	587	576	0	594	574	296	570	453	412	316
PAAD	185	93	102	0	146	0	124	0	96	0	91
PCPG	179	61	173	0	179	0	179	0	179	0	178
PRAD	499	276	419	115	336	0	374	0	421	164	261
READ	171	171	162	35	165	69	163	0	143	130	69
SARC	261	114	169	0	242	0	167	0	194	0	0
SKCM	470	367	384	118	413	0	382	0	409	204	343
STAD	443	351	370	107	386	0	274	0	372	264	221
TGCT	150	0	0	0	0	0	0	0	0	0	0
THCA	503	490	494	98	503	0	494	0	495	222	402
THYM	124	0	0	0	0	0	0	0	0	0	0
UCEC	560	497	525	106	547	54	527	0	534	200	248
UCS	57	57	56	0	57	0	57	0	56	0	57
UVM	80	0	0	0	80	0	0	0	0	0	0
Totals	11314	8694	9474	1091	9909	2217	8548	1135	8875	4033	5918