stddata__2014_07_15 Samples Report
- Overview
+ Introduction
- Summary

There were 161 redactions, 2919 replicate aliquots, 23 blacklisted aliquots, and 617 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 82 90 0 80 0 79 0 80 0 91
BLCA 412 218 266 112 352 0 267 0 267 127 130
BRCA 1097 1017 1053 19 1045 526 1058 0 1042 409 976
CESC 307 200 206 0 256 0 206 0 256 0 39
CHOL 36 0 0 0 0 0 0 0 0 0 0
COAD 460 441 438 69 445 153 432 0 406 331 154
COADREAD 631 612 600 104 610 222 595 0 549 461 223
DLBC 58 33 28 0 48 0 28 0 27 0 0
ESCA 185 127 126 32 185 0 70 0 175 0 0
GBM 613 582 571 0 420 540 160 565 0 214 290
HNSC 528 423 511 108 528 0 497 0 512 212 306
KICH 113 94 66 0 66 0 66 0 66 0 66
KIRC 537 515 527 0 535 72 518 0 506 454 417
KIRP 323 202 225 0 242 16 213 0 242 0 168
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 403 512 52 512 27 513 0 504 258 289
LIHC 377 176 208 0 256 0 212 0 268 0 202
LUAD 585 474 493 120 568 32 488 0 491 237 229
LUSC 504 422 490 0 492 154 489 0 467 195 178
MESO 87 21 37 0 37 0 36 0 26 0 0
OV 602 587 576 0 594 574 296 570 453 412 316
PAAD 185 93 102 0 146 0 124 0 96 0 91
PCPG 179 61 173 0 179 0 179 0 179 0 178
PRAD 499 276 419 115 336 0 374 0 421 164 261
READ 171 171 162 35 165 69 163 0 143 130 69
SARC 261 114 169 0 242 0 167 0 194 0 0
SKCM 470 367 384 118 413 0 382 0 409 204 343
STAD 443 351 370 107 386 0 274 0 372 264 221
TGCT 150 0 0 0 0 0 0 0 0 0 0
THCA 503 490 494 98 503 0 494 0 495 222 402
THYM 124 0 0 0 0 0 0 0 0 0 0
UCEC 560 497 525 106 547 54 527 0 534 200 248
UCS 57 57 56 0 57 0 57 0 56 0 57
UVM 80 0 0 0 80 0 0 0 0 0 0
Totals 11314 8694 9474 1091 9909 2217 8548 1135 8875 4033 5918
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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