Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
SAMD11	148398	broad.mit.edu	37	1	878709	878709	+	Silent	SNP	C	T	T	rs144453653	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:878709C>T	uc001abw.1	+	12	1721	c.1641C>T	c.(1639-1641)GAC>GAT	p.D547D	SAMD11_uc001abx.1_Silent_p.D410D	NM_152486	NP_689699	Q96NU1	SAM11_HUMAN	sterile alpha motif domain containing 11	547	SAM.					nucleus					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00459)|Epithelial(90;1.74e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.93e-23)|Colorectal(212;0.000159)|COAD - Colon adenocarcinoma(227;0.000193)|BRCA - Breast invasive adenocarcinoma(365;0.000472)|Kidney(185;0.0023)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0342)|Lung(427;0.199)		CCGTGGATGACGTCTGCAGCT	0.667													6	26					0	0	0	0
AJAP1	55966	broad.mit.edu	37	1	4772664	4772664	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:4772664G>T	uc001alm.1	+	2	1115	c.734G>T	c.(733-735)AGG>ATG	p.R245M	AJAP1_uc001aln.2_Missense_Mutation_p.R245M	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	245	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		CCCCGGAGAAGGATCCCAGGT	0.498													24	48					9.86323e-18	1.2329e-17	1	0
CHD5	26038	broad.mit.edu	37	1	6196851	6196851	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:6196851G>A	uc001amb.1	-	16	2611	c.2511C>T	c.(2509-2511)GGC>GGT	p.G837G	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	837	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTCGATGGAGCCCAGGATGG	0.587													20	29					0	0	0	0
RERE	473	broad.mit.edu	37	1	8418541	8418541	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:8418541C>T	uc001ape.2	-	21	4864	c.4054G>A	c.(4054-4056)GCC>ACC	p.A1352T	RERE_uc001apf.2_Missense_Mutation_p.A1352T|RERE_uc001apd.2_Missense_Mutation_p.A798T	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1352					multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		ATGGTGAGGGCGCTGTGCCGG	0.701													5	12					0	0	0	0
PTCHD2	57540	broad.mit.edu	37	1	11579548	11579548	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:11579548G>A	uc001ash.3	+	8	2164	c.2026G>A	c.(2026-2028)GAG>AAG	p.E676K	PTCHD2_uc001asi.1_Missense_Mutation_p.E676K	NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	676	Cytoplasmic (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		GCTGGAGGTCGAGGAAGAGCC	0.632													60	177					0	0	0	0
LOC649330	649330	broad.mit.edu	37	1	12907549	12907549	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:12907549C>A	uc009vno.2	-	1	689	c.594G>T	c.(592-594)CTG>CTT	p.L198L	HNRNPCL1_uc010obf.1_Silent_p.L198L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	198							nucleic acid binding|nucleotide binding				0						CCAGGTTTTCCAGGAGAGAAT	0.438													39	52					1.78197e-24	2.3663e-24	1	0
CROCCL1	84809	broad.mit.edu	37	1	16946417	16946417	+	RNA	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:16946417G>C	uc010ocf.1	-	3		c.481C>G			CROCCL1_uc009vov.1_RNA|CROCCL1_uc001aze.2_RNA|CROCCL1_uc001azf.2_RNA					Homo sapiens mRNA for FLJ00313 protein.												0						TCACTCAGCTGTTCCTTCTCA	0.677													6	26					0	0	0	0
FUCA1	2517	broad.mit.edu	37	1	24180881	24180881	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:24180881G>C	uc001bie.2	-	5	983	c.938C>G	c.(937-939)TCT>TGT	p.S313C	FUCA1_uc009vqt.1_RNA	NM_000147	NP_000138	P04066	FUCO_HUMAN	fucosidase, alpha-L-1, tissue precursor	313					fucose metabolic process|glycosaminoglycan catabolic process	lysosome	alpha-L-fucosidase activity|cation binding			breast(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.00957)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-24)|Colorectal(126;5.69e-08)|COAD - Colon adenocarcinoma(152;3.15e-06)|GBM - Glioblastoma multiforme(114;9.04e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|KIRC - Kidney renal clear cell carcinoma(1967;0.00342)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.144)		TGTAACATCAGACAATGCCAT	0.343													46	85					0	0	0	0
MYOM3	127294	broad.mit.edu	37	1	24397718	24397718	+	Silent	SNP	G	A	A	rs114185181	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:24397718G>A	uc001bin.3	-	25	3202	c.3039C>T	c.(3037-3039)AAC>AAT	p.N1013N	MYOM3_uc001bim.3_Silent_p.N670N|MYOM3_uc001bio.2_Silent_p.N1013N	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1013										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGATGTCAATGTTCCAGCCGG	0.562											OREG0013235	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	20					0	0	0	0
C1orf63	57035	broad.mit.edu	37	1	25571721	25571722	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:25571721_25571722GC>TT	uc001bjw.2	-	3	843_844	c.591_592GC>AA	c.(589-594)TTGCCA>TTAACA	p.P198T		NM_020317	NP_064713	Q9BUV0	CA063_HUMAN	hypothetical protein LOC57035	198										pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.9e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000333)|BRCA - Breast invasive adenocarcinoma(304;0.000443)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000932)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGACTAGCTGGCAAGTCAATGT	0.386													37	50					0	0	0	0
AIM1L	55057	broad.mit.edu	37	1	26671807	26671807	+	5'Flank	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:26671807G>A	uc001bmd.3	-						uc009vsi.1_Nonsense_Mutation_p.Q448*	NM_001039775	NP_001034864	Q8N1P7	AIM1L_HUMAN	absent in melanoma 1-like								sugar binding			pancreas(1)	1		all_cancers(24;4.67e-25)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00637)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;1.51e-27)|Colorectal(126;1.61e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000792)|BRCA - Breast invasive adenocarcinoma(304;0.00104)|STAD - Stomach adenocarcinoma(196;0.00154)|GBM - Glioblastoma multiforme(114;0.00858)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.165)|LUSC - Lung squamous cell carcinoma(448;0.239)		TCAGAGTTCTGAACAAACTTA	0.572													22	47					0	0	0	0
THRAP3	9967	broad.mit.edu	37	1	36752628	36752628	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:36752628G>T	uc001cae.3	+	4	1021	c.797G>T	c.(796-798)CGT>CTT	p.R266L	THRAP3_uc001caf.3_Missense_Mutation_p.R266L|THRAP3_uc001cag.1_Missense_Mutation_p.R266L	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	266	Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CGGTCACCCCGTCCTAGCCCC	0.617			T	USP6	aneurysmal bone cysts								31	137					1.45844e-13	1.73455e-13	1	0
EPHA10	284656	broad.mit.edu	37	1	38227327	38227327	+	Silent	SNP	C	T	T	rs143310845		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:38227327C>T	uc009vvi.2	-	3	686	c.600G>A	c.(598-600)GCG>GCA	p.A200A	EPHA10_uc001cbw.3_Silent_p.A200A	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	200	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCGAGACAAGCGCCACGCATG	0.672													26	64					0	0	0	0
AKIRIN1	79647	broad.mit.edu	37	1	39463964	39463964	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:39463964C>G	uc001ccw.2	+	2	479	c.342C>G	c.(340-342)CTC>CTG	p.L114L	AKIRIN1_uc010oip.1_Silent_p.L114L|AKIRIN1_uc010oiq.1_Intron	NM_024595	NP_078871	Q9H9L7	AKIR1_HUMAN	akirin 1 isoform 1	114						nucleus					0						CCTCAGCACTCACAGCACCTA	0.408													12	41					0	0	0	0
MACF1	23499	broad.mit.edu	37	1	39901344	39901344	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:39901344C>G	uc010oiu.1	+	34	13350	c.13219C>G	c.(13219-13221)CAG>GAG	p.Q4407E	MACF1_uc010ois.1_Missense_Mutation_p.Q3905E|MACF1_uc001cda.1_Missense_Mutation_p.Q3792E|MACF1_uc001cdc.1_Missense_Mutation_p.Q2862E	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGAAAAATACCAGAAAGCAGA	0.463													25	87					0	0	0	0
NASP	4678	broad.mit.edu	37	1	46067982	46067982	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:46067982G>C	uc001coi.1	+	3	265	c.163G>C	c.(163-165)GTG>CTG	p.V55L	NASP_uc010olq.1_Intron|NASP_uc001coh.1_Missense_Mutation_p.V57L|NASP_uc001coj.1_Missense_Mutation_p.V55L|NASP_uc010olr.1_Intron|NASP_uc001cok.1_5'UTR	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	55	TPR 1.				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					GAAACATCTGGTGATGGGGGA	0.348													31	77					0	0	0	0
GPBP1L1	60313	broad.mit.edu	37	1	46124746	46124746	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:46124746T>C	uc001coq.2	-	4	1375	c.14A>G	c.(13-15)GAT>GGT	p.D5G		NM_021639	NP_067652	Q9HC44	GPBL1_HUMAN	GC-rich promoter binding protein 1-like 1	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AGGAACAAAATCATGCTGCGC	0.433													30	85					0	0	0	0
PIK3R3	8503	broad.mit.edu	37	1	46546392	46546392	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:46546392G>A	uc001cpb.3	-	2	893	c.137C>T	c.(136-138)ACT>ATT	p.T46I	PIK3R3_uc009vyb.2_Missense_Mutation_p.T46I|PIK3R3_uc009vyc.2_Missense_Mutation_p.T63I|PIK3R3_uc001cpc.3_Missense_Mutation_p.T46I|PIK3R3_uc010olw.1_Missense_Mutation_p.T92I	NM_003629	NP_003620	Q92569	P55G_HUMAN	phosphoinositide-3-kinase, regulatory subunit 3	46					insulin receptor signaling pathway|platelet activation|T cell costimulation		1-phosphatidylinositol-3-kinase activity|protein binding				0	Acute lymphoblastic leukemia(166;0.155)					AACTGCTGAAGTCATTGGCTT	0.393													96	276					0	0	0	0
CC2D1B	200014	broad.mit.edu	37	1	52825164	52825164	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:52825164C>A	uc001ctq.1	-	9	1123	c.985G>T	c.(985-987)GTG>TTG	p.V329L	CC2D1B_uc001ctr.2_5'Flank|CC2D1B_uc001cts.2_Missense_Mutation_p.V20L	NM_032449	NP_115825	Q5T0F9	C2D1B_HUMAN	coiled-coil and C2 domain containing 1B	329										ovary(2)	2						CTCAGATCCACGGGCTGCCCC	0.637													19	62					1.87028e-06	1.9966e-06	1	0
SLC1A7	6512	broad.mit.edu	37	1	53555531	53555531	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:53555531G>A	uc001cuy.2	-	9	1470	c.1302C>T	c.(1300-1302)CTC>CTT	p.L434L	SLC1A7_uc001cux.2_Silent_p.L87L	NM_006671	NP_006662	O00341	EAA5_HUMAN	solute carrier family 1 (glutamate transporter),	434	Helical; (Potential).					integral to membrane|plasma membrane	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity			ovary(2)|large_intestine(1)	3				Colorectal(1306;0.234)	L-Glutamic Acid(DB00142)	CCACGGAGGTGAGCACGATGA	0.627													34	111					0	0	0	0
WDR78	79819	broad.mit.edu	37	1	67337096	67337096	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:67337096C>G	uc001dcx.2	-	6	953	c.897G>C	c.(895-897)AAG>AAC	p.K299N	WDR78_uc001dcy.2_Missense_Mutation_p.K299N|WDR78_uc001dcz.2_Missense_Mutation_p.K299N|WDR78_uc009waw.2_Missense_Mutation_p.K45N|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	299										ovary(2)	2						CATCTTTATTCTTTGGTGCTC	0.303													17	49					0	0	0	0
NEGR1	257194	broad.mit.edu	37	1	71873200	71873200	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:71873200A>T	uc001dfw.2	-	7	1094	c.994T>A	c.(994-996)TGC>AGC	p.C332S	NEGR1_uc001dfv.2_Missense_Mutation_p.C204S|NEGR1_uc010oqs.1_Missense_Mutation_p.C288S	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	332					cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		AGGTACCAGCAGGAGAAAAGA	0.398													15	38					0	0	0	0
C1orf173	127254	broad.mit.edu	37	1	75038328	75038328	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:75038328G>C	uc001dgg.2	-	14	3285	c.3066C>G	c.(3064-3066)GCC>GCG	p.A1022A		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1022	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TGCAAAGGAAGGCTTCCTTTG	0.502													33	98					0	0	0	0
SYDE2	84144	broad.mit.edu	37	1	85656331	85656331	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:85656331C>A	uc009wcm.2	-	2	899	c.850G>T	c.(850-852)GTT>TTT	p.V284F	SYDE2_uc001dku.3_Missense_Mutation_p.V284F	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	284					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		TTCTTTGAAACAGTGATGCTG	0.373													40	104					4.67007e-22	6.10222e-22	1	0
SNX7	51375	broad.mit.edu	37	1	99150522	99150522	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:99150522G>A	uc010ouc.1	+	2	314	c.262G>A	c.(262-264)GAG>AAG	p.E88K	SNX7_uc001dsa.2_Missense_Mutation_p.E24K|SNX7_uc010oud.1_Missense_Mutation_p.E88K	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	24					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		AATCAAGTTTGAGGATGAACC	0.348													18	64					0	0	0	0
AMPD2	271	broad.mit.edu	37	1	110171292	110171292	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:110171292A>G	uc009wfh.1	+	13	2139	c.1597A>G	c.(1597-1599)AAA>GAA	p.K533E	AMPD2_uc009wfg.1_RNA|AMPD2_uc001dyb.1_Missense_Mutation_p.K452E|AMPD2_uc001dyc.1_Missense_Mutation_p.K533E|AMPD2_uc010ovr.1_Missense_Mutation_p.K458E|AMPD2_uc001dyd.1_Missense_Mutation_p.K414E|AMPD2_uc001dye.1_5'Flank	NM_004037	NP_004028	Q01433	AMPD2_HUMAN	adenosine monophosphate deaminase 2 (isoform L)	533					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|breast(1)	3		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		Lung(183;0.0425)|all cancers(265;0.0884)|Colorectal(144;0.109)|Epithelial(280;0.111)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGAGGAGAGCAAATACCAGAA	0.597													10	36					0	0	0	0
KCNA3	3738	broad.mit.edu	37	1	111215826	111215826	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:111215826C>G	uc001dzv.1	-	1	1830	c.1606G>C	c.(1606-1608)GGT>CGT	p.G536R		NM_002232	NP_002223	P22001	KCNA3_HUMAN	potassium voltage-gated channel, shaker-related	536						voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(4)|pancreas(1)	5		all_cancers(81;3.92e-06)|all_epithelial(167;1.28e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Lung(183;0.0235)|Colorectal(144;0.0306)|all cancers(265;0.0752)|Epithelial(280;0.0821)|COAD - Colon adenocarcinoma(174;0.132)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGGTTCATACCCCCCTCTTCG	0.517													21	99					0	0	0	0
CHD1L	9557	broad.mit.edu	37	1	146758169	146758169	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:146758169A>G	uc001epm.3	+	18	2276	c.2213A>G	c.(2212-2214)CAC>CGC	p.H738R	uc001epp.2_Intron|CHD1L_uc001epn.3_Missense_Mutation_p.H625R|CHD1L_uc010ozo.1_RNA|CHD1L_uc009wjg.2_RNA|CHD1L_uc009wjh.2_Missense_Mutation_p.H644R|CHD1L_uc010ozp.1_Missense_Mutation_p.H457R|CHD1L_uc001epo.3_Missense_Mutation_p.H534R|CHD1L_uc009wji.2_Missense_Mutation_p.H457R	NM_004284	NP_004275	Q86WJ1	CHD1L_HUMAN	chromodomain helicase DNA binding protein	738	Macro.				chromatin remodeling|DNA repair	cytoplasm|nucleus|plasma membrane	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(3)|lung(2)|upper_aerodigestive_tract(1)	6	all_hematologic(923;0.0487)					CTCATTGTGCACTGCGTAGGT	0.587													34	170					0	0	0	0
GJA8	2703	broad.mit.edu	37	1	147380514	147380514	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:147380514G>T	uc001epu.1	+	2	495	c.432G>T	c.(430-432)GAG>GAT	p.E144D		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	144	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					TCCGGCTGGAGGGGACCCTGC	0.617													23	122					1.77063e-15	2.17446e-15	1	0
GBA	2629	broad.mit.edu	37	1	155207167	155207167	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:155207167C>T	uc001fjh.2	-	7	1114	c.964G>A	c.(964-966)GAC>AAC	p.D322N	RAG1AP1_uc010pey.1_Intron|GBA_uc010pfw.1_Missense_Mutation_p.D209N|GBA_uc010pfx.1_Missense_Mutation_p.D273N|GBA_uc001fji.2_Missense_Mutation_p.D322N|GBA_uc001fjj.2_Missense_Mutation_p.D322N|GBA_uc001fjk.2_Missense_Mutation_p.D322N|GBA_uc001fjl.2_Missense_Mutation_p.D322N|GBA_uc010pfy.1_Missense_Mutation_p.D235N|GBA_uc009wqk.1_Missense_Mutation_p.D235N	NM_000157	NP_000148	P04062	GLCM_HUMAN	glucocerebrosidase precursor	322					carbohydrate metabolic process|cell death|cellular response to tumor necrosis factor|ceramide biosynthetic process|glucosylceramide catabolic process|lysosome organization|negative regulation of interleukin-6 production|negative regulation of MAP kinase activity|positive regulation of protein dephosphorylation|sphingosine biosynthetic process|termination of signal transduction	lysosomal lumen|lysosomal membrane	cation binding|glucosylceramidase activity|receptor binding			ovary(1)|skin(1)	2	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)		Alglucerase(DB00088)|Imiglucerase(DB00053)	AAGCGTTGGTCATCCAGCATG	0.572									Gaucher_disease_type_I				19	85					0	0	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156931516	156931516	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:156931516G>C	uc001fqo.2	-	13	2112	c.1072C>G	c.(1072-1074)CGA>GGA	p.R358G	ARHGEF11_uc001fqn.2_Missense_Mutation_p.R398G	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	358	RGSL.				actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCAAGCTTCGGGAATCCTTG	0.368													15	74					0	0	0	0
FCRL5	83416	broad.mit.edu	37	1	157491038	157491038	+	Missense_Mutation	SNP	G	T	T	rs142243479		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:157491038G>T	uc001fqu.2	-	11	2442	c.2284C>A	c.(2284-2286)CAT>AAT	p.H762N	FCRL5_uc009wsm.2_Missense_Mutation_p.H762N	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	762	Extracellular (Potential).|Ig-like C2-type 8.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACCGCAGCATGGGTCCCGGGA	0.537													12	49					1.5842e-08	1.74833e-08	1	0
SPTA1	6708	broad.mit.edu	37	1	158582684	158582684	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:158582684A>T	uc001fst.1	-	51	7256	c.7057T>A	c.(7057-7059)TCC>ACC	p.S2353T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2353	EF-hand 3.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCATCACTGGACTTGATGTTT	0.478													42	56					0	0	0	0
OR10J1	26476	broad.mit.edu	37	1	159410206	159410206	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:159410206C>A	uc010piv.1	+	1	658	c.658C>A	c.(658-660)CCT>ACT	p.P220T	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	220	Helical; Name=5; (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					GCTTGTTGTACCTATGGGTCT	0.453													62	99					5.86059e-21	7.55707e-21	1	0
APOA2	336	broad.mit.edu	37	1	161192214	161192214	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:161192214G>T	uc001fzc.1	-	4	342	c.284C>A	c.(283-285)ACA>AAA	p.T95K	APOA2_uc001fzb.1_RNA	NM_001643	NP_001634	P02652	APOA2_HUMAN	apolipoprotein A-II preproprotein	95					cholesterol efflux|cholesterol homeostasis|diacylglycerol catabolic process|high-density lipoprotein particle assembly|high-density lipoprotein particle clearance|high-density lipoprotein particle remodeling|interspecies interaction between organisms|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol import|negative regulation of cholesterol transporter activity|negative regulation of cytokine secretion involved in immune response|negative regulation of lipase activity|negative regulation of lipid catabolic process|negative regulation of very-low-density lipoprotein particle remodeling|phosphatidylcholine biosynthetic process|phospholipid catabolic process|phospholipid efflux|positive regulation of cholesterol esterification|positive regulation of interleukin-8 biosynthetic process|positive regulation of lipid catabolic process|protein folding|regulation of protein stability|response to glucose stimulus|reverse cholesterol transport|triglyceride metabolic process|triglyceride-rich lipoprotein particle remodeling	chylomicron|endoplasmic reticulum lumen|spherical high-density lipoprotein particle|very-low-density lipoprotein particle	apolipoprotein receptor binding|cholesterol binding|high-density lipoprotein particle receptor binding|lipase inhibitor activity|phosphatidylcholine binding|phosphatidylcholine-sterol O-acyltransferase activator activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GGCAGGCTGTGTTCCAAGTTC	0.522													47	243					1.89013e-27	2.55846e-27	1	0
NOS1AP	9722	broad.mit.edu	37	1	162337111	162337111	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:162337111G>T	uc001gbv.2	+	10	1762	c.1375G>T	c.(1375-1377)GAG>TAG	p.E459*	NOS1AP_uc010pks.1_RNA|NOS1AP_uc001gbw.2_Nonsense_Mutation_p.E454*|NOS1AP_uc009wut.1_Nonsense_Mutation_p.E164*	NM_014697	NP_055512	O75052	CAPON_HUMAN	nitric oxide synthase 1 (neuronal) adaptor	459					regulation of apoptosis|regulation of nitric oxide biosynthetic process|regulation of nitric-oxide synthase activity		nitric-oxide synthase binding|PDZ domain binding			lung(2)|upper_aerodigestive_tract(1)	3	all_hematologic(112;0.203)		BRCA - Breast invasive adenocarcinoma(70;0.0537)			CAAGTTCCGAGAGTCAGGCAT	0.662													10	39					2.68362e-12	3.13089e-12	1	0
FAM5B	57795	broad.mit.edu	37	1	177247744	177247744	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:177247744T>A	uc001glf.2	+	7	1370	c.1058T>A	c.(1057-1059)CTG>CAG	p.L353Q	FAM5B_uc010pna.1_Missense_Mutation_p.L103Q|FAM5B_uc001glg.2_Missense_Mutation_p.L248Q	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	353						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GACCGGTTCCTGAACTCCACA	0.557													65	360					0	0	0	0
ABL2	27	broad.mit.edu	37	1	179100584	179100584	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:179100584C>G	uc001gmj.3	-	3	540	c.253G>C	c.(253-255)GAA>CAA	p.E85Q	ABL2_uc010pnf.1_Missense_Mutation_p.E85Q|ABL2_uc010png.1_Missense_Mutation_p.E64Q|ABL2_uc010pnh.1_Missense_Mutation_p.E64Q|ABL2_uc009wxe.2_Missense_Mutation_p.E64Q|ABL2_uc001gmg.3_Missense_Mutation_p.E70Q|ABL2_uc001gmi.3_Missense_Mutation_p.E70Q|ABL2_uc001gmh.3_Missense_Mutation_p.E49Q|ABL2_uc010pne.1_Missense_Mutation_p.E49Q|ABL2_uc009wxf.1_Missense_Mutation_p.E70Q|ABL2_uc001gmk.2_Missense_Mutation_p.E49Q	NM_007314	NP_009298	P42684	ABL2_HUMAN	arg tyrosine kinase isoform b	85	CAP.				axon guidance|cell adhesion|peptidyl-tyrosine phosphorylation|positive regulation of oxidoreductase activity|signal transduction	cytoskeleton|cytosol	ATP binding|magnesium ion binding|manganese ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(8)|breast(3)|ovary(2)|central_nervous_system(1)	14					Adenosine triphosphate(DB00171)|Dasatinib(DB01254)	GCCTGGGGTTCAACATCACAA	0.448			T	ETV6	AML								17	55					0	0	0	0
CEP350	9857	broad.mit.edu	37	1	180065045	180065045	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:180065045A>G	uc001gnt.2	+	35	9282	c.8899A>G	c.(8899-8901)AGT>GGT	p.S2967G	CEP350_uc009wxl.2_Missense_Mutation_p.S2966G|CEP350_uc001gnv.2_Missense_Mutation_p.S1102G|CEP350_uc001gnw.1_Missense_Mutation_p.S724G|CEP350_uc001gnx.1_Missense_Mutation_p.S724G	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2967						centrosome|nucleus|spindle				ovary(4)	4						AGAAAGCACTAGTAAAAGGGT	0.343													12	14					0	0	0	0
C1orf27	54953	broad.mit.edu	37	1	186359971	186359971	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:186359971G>C	uc001grw.2	+	7	839	c.603G>C	c.(601-603)GAG>GAC	p.E201D	C1orf27_uc010poq.1_Missense_Mutation_p.E201D|C1orf27_uc010por.1_Missense_Mutation_p.E169D	NM_017847	NP_060317	Q5SWX8	ODR4_HUMAN	odorant response abnormal 4 isoform 1	201						integral to membrane	oxidoreductase activity|zinc ion binding			ovary(1)	1						ATACTCTGGAGAAAAATACAA	0.353													12	20					0	0	0	0
KCNT2	343450	broad.mit.edu	37	1	196250048	196250048	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:196250048G>T	uc001gtd.1	-	25	2912	c.2852C>A	c.(2851-2853)ACT>AAT	p.T951N	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.T877N|KCNT2_uc001gtf.1_Missense_Mutation_p.T927N|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.T927N|KCNT2_uc001gth.1_Missense_Mutation_p.T448N	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	951	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AACATCTCCAGTAGAAGAACA	0.333													29	47					1.56442e-22	2.06066e-22	1	0
CFHR5	81494	broad.mit.edu	37	1	196965167	196965167	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:196965167G>A	uc001gts.3	+	6	934	c.806G>A	c.(805-807)TGT>TAT	p.C269Y		NM_030787	NP_110414	Q9BXR6	FHR5_HUMAN	complement factor H-related 5 precursor	269	Sushi 5.				complement activation, alternative pathway	extracellular region				breast(1)|skin(1)	2						GTGAAAACATGTGGATACATA	0.343													30	143					0	0	0	0
CRB1	23418	broad.mit.edu	37	1	197391059	197391059	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:197391059C>A	uc001gtz.2	+	6	2236	c.2101C>A	c.(2101-2103)CCC>ACC	p.P701T	CRB1_uc010poz.1_Missense_Mutation_p.P632T|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.P589T|CRB1_uc010ppb.1_Missense_Mutation_p.P701T|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Missense_Mutation_p.P182T|CRB1_uc001gub.1_Missense_Mutation_p.P350T	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	701	Extracellular (Potential).|EGF-like 12.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						CTGCCACAGGCCCTATGAAGG	0.532													34	41					4.62619e-21	5.98109e-21	1	0
ADORA1	134	broad.mit.edu	37	1	203098090	203098090	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:203098090C>T	uc001gze.1	+	3	554	c.121C>T	c.(121-123)CGG>TGG	p.R41W	ADORA1_uc001gzf.1_Missense_Mutation_p.R41W|ADORA1_uc010pqg.1_5'UTR|ADORA1_uc009xak.1_5'UTR|ADORA1_uc010pqh.1_Missense_Mutation_p.R74W	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	41	Cytoplasmic (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	CCAGGCGCTGCGGGATGCCAC	0.637													114	175					0	0	0	0
PRELP	5549	broad.mit.edu	37	1	203455927	203455927	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:203455927G>A	uc001gzs.2	+	3	1267	c.1067G>A	c.(1066-1068)CGG>CAG	p.R356Q	PRELP_uc001gzt.2_Missense_Mutation_p.R356Q	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	356	LRR 11.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			CGCTACCTGCGGCTGGATGGA	0.597													27	34					0	0	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204394033	204394033	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:204394033G>C	uc001haw.2	-	34	5331	c.4852C>G	c.(4852-4854)CAG>GAG	p.Q1618E	PIK3C2B_uc010pqv.1_Missense_Mutation_p.Q1590E	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1618					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GTCTTCTCCTGAGCCAGGTCC	0.642													14	53					0	0	0	0
ELK4	2005	broad.mit.edu	37	1	205589479	205589479	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:205589479T>A	uc001hcy.1	-	3	1945	c.695A>T	c.(694-696)AAA>ATA	p.K232I	ELK4_uc001hcz.2_Missense_Mutation_p.K232I	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	232						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GGAAGGCAGTTTTGGGGAAAC	0.507			T	SLC45A3	prostate								29	108					0	0	0	0
IRF6	3664	broad.mit.edu	37	1	209963078	209963078	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:209963078G>C	uc001hhq.1	-	8	1376	c.1113C>G	c.(1111-1113)ATC>ATG	p.I371M	IRF6_uc010psm.1_Missense_Mutation_p.I276M|IRF6_uc009xct.1_Missense_Mutation_p.I371M	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	371					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		AGCATAAGTAGATCTCAAACG	0.453										HNSCC(57;0.16)			17	64					0	0	0	0
PROX1	5629	broad.mit.edu	37	1	214185035	214185035	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:214185035T>A	uc001hkh.2	+	4	2277	c.2005T>A	c.(2005-2007)TAC>AAC	p.Y669N		NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	669	Prospero-like.				aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		GAACATGCACTACAATAAAGC	0.393													34	67					0	0	0	0
CAPN2	824	broad.mit.edu	37	1	223934731	223934731	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:223934731G>T	uc001hob.3	+	5	817	c.593G>T	c.(592-594)GGT>GTT	p.G198V	CAPN2_uc010puy.1_Missense_Mutation_p.G120V	NM_001748	NP_001739	P17655	CAN2_HUMAN	calpain 2 isoform 1	198	Calpain catalytic.				proteolysis	cytoplasm|plasma membrane				lung(3)|breast(1)|skin(1)	5				GBM - Glioblastoma multiforme(131;0.109)		CTATCAGGGGGTGCCACCACT	0.517													26	121					2.79863e-10	3.14525e-10	1	0
LYST	1130	broad.mit.edu	37	1	235937202	235937202	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:235937202G>C	uc001hxj.2	-	19	5899	c.5724C>G	c.(5722-5724)ATC>ATG	p.I1908M	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1908					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TAACATCTTGGATTATAGCAT	0.318									Chediak-Higashi_syndrome				23	80					0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240370401	240370401	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:240370401G>C	uc010pyd.1	+	5	2514	c.2289G>C	c.(2287-2289)CTG>CTC	p.L763L	FMN2_uc010pye.1_Silent_p.L767L	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	763	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGGATGGGCTGCCAGGGCGTC	0.537													20	44					0	0	0	0
OR6F1	343169	broad.mit.edu	37	1	247875357	247875357	+	Missense_Mutation	SNP	C	A	A	rs138204394		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:247875357C>A	uc001idj.1	-	1	701	c.701G>T	c.(700-702)CGG>CTG	p.R234L		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	234	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GGCTTTGCTCCGGCCACTGGC	0.527													49	195					3.19069e-20	4.08208e-20	1	0
OR2L13	284521	broad.mit.edu	37	1	248263111	248263111	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:248263111G>C	uc001ids.2	+	3	771	c.434G>C	c.(433-435)GGA>GCA	p.G145A		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			AAGATGATTGGAGGCTCTTGG	0.483													57	280					0	0	0	0
OR2M3	127062	broad.mit.edu	37	1	248367182	248367182	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:248367182C>A	uc010pzg.1	+	1	813	c.813C>A	c.(811-813)GAC>GAA	p.D271E		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	271	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CAACACAGGACAAGATGGTGT	0.488													47	198					4.01344e-20	5.12131e-20	1	0
MLLT10	8028	broad.mit.edu	37	10	21962413	21962413	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:21962413A>T	uc001iqs.2	+	11	1534	c.1186A>T	c.(1186-1188)ACC>TCC	p.T396S	MLLT10_uc001iqt.2_Missense_Mutation_p.T396S|MLLT10_uc001iqv.2_RNA|MLLT10_uc001iqy.2_Missense_Mutation_p.T396S|MLLT10_uc001ira.2_Intron|MLLT10_uc001irb.2_5'Flank|MLLT10_uc001iqz.2_Missense_Mutation_p.T151S	NM_004641	NP_004632	P55197	AF10_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	396	DNA-binding.				positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(1)|skin(1)	2						GTCATCAGCAACCAAAGATGT	0.458			T	MLL|PICALM|CDK6	AL								64	124					0	0	0	0
ANKRD26	22852	broad.mit.edu	37	10	27375501	27375501	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:27375501T>C	uc001ith.2	-	5	848	c.676A>G	c.(676-678)ATA>GTA	p.I226V	ANKRD26_uc009xku.1_Missense_Mutation_p.I226V	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	226						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TGTTTAGGTATCCTTTCTTCT	0.264													15	60					0	0	0	0
MKX	283078	broad.mit.edu	37	10	28023599	28023599	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:28023599G>T	uc001ity.3	-	5	849	c.624C>A	c.(622-624)GCC>GCA	p.A208A	MKX_uc001itx.3_Silent_p.A208A	NM_173576	NP_775847	Q8IYA7	MKX_HUMAN	mohawk homeobox	208					muscle organ development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGTCCTCACTGGCCCGTGACT	0.502													27	105					1.77063e-15	2.17446e-15	1	0
ARMC4	55130	broad.mit.edu	37	10	28260117	28260117	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:28260117G>T	uc009xky.2	-	8	1160	c.1062C>A	c.(1060-1062)AAC>AAA	p.N354K	ARMC4_uc010qds.1_Intron|ARMC4_uc010qdt.1_Missense_Mutation_p.N46K|ARMC4_uc001itz.2_Missense_Mutation_p.N354K|ARMC4_uc010qdu.1_Missense_Mutation_p.N46K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	354							binding			ovary(4)|skin(2)	6						AATTAATTTGGTTCTTCTCCA	0.413													26	104					4.87955e-14	5.86025e-14	1	0
ZEB1	6935	broad.mit.edu	37	10	31809695	31809695	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:31809695A>C	uc001ivs.3	+	7	1495	c.1432A>C	c.(1432-1434)AGT>CGT	p.S478R	ZEB1_uc001ivr.3_Missense_Mutation_p.S260R|ZEB1_uc010qee.1_Missense_Mutation_p.S260R|ZEB1_uc010qef.1_Missense_Mutation_p.S260R|ZEB1_uc009xlj.1_Missense_Mutation_p.S404R|ZEB1_uc010qeg.1_Missense_Mutation_p.S337R|ZEB1_uc009xlk.1_Missense_Mutation_p.S260R|ZEB1_uc001ivt.3_Missense_Mutation_p.S260R|ZEB1_uc001ivu.3_Missense_Mutation_p.S479R|ZEB1_uc001ivv.3_Missense_Mutation_p.S458R|ZEB1_uc010qeh.1_Missense_Mutation_p.S411R|ZEB1_uc009xlo.1_Missense_Mutation_p.S461R|ZEB1_uc009xlp.2_Missense_Mutation_p.S462R	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	478					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				CATCAACTACAGTCTTGAGCA	0.378													20	50					0	0	0	0
ZEB1	6935	broad.mit.edu	37	10	31812949	31812949	+	Missense_Mutation	SNP	G	T	T	rs35653460		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:31812949G>T	uc001ivs.3	+	8	2753	c.2690G>T	c.(2689-2691)CGG>CTG	p.R897L	ZEB1_uc001ivr.3_Missense_Mutation_p.R679L|ZEB1_uc010qee.1_Missense_Mutation_p.R679L|ZEB1_uc010qef.1_Missense_Mutation_p.R679L|ZEB1_uc009xlk.1_Missense_Mutation_p.R679L|ZEB1_uc001ivt.3_Missense_Mutation_p.R679L|ZEB1_uc001ivu.3_Missense_Mutation_p.R898L|ZEB1_uc001ivv.3_Missense_Mutation_p.R877L|ZEB1_uc010qeh.1_Missense_Mutation_p.R830L|ZEB1_uc009xlp.2_Missense_Mutation_p.R881L	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	897					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				AAGAAAATGCGGAAGACAGAA	0.373													27	97					2.61193e-14	3.16012e-14	1	0
ITGB1	3688	broad.mit.edu	37	10	33199265	33199265	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:33199265G>A	uc001iws.3	-	14	2186	c.2050C>T	c.(2050-2052)CAA>TAA	p.Q684*	ITGB1_uc001iwp.3_Nonsense_Mutation_p.Q684*|ITGB1_uc001iwq.3_Nonsense_Mutation_p.Q684*|ITGB1_uc001iwr.3_Nonsense_Mutation_p.Q684*|ITGB1_uc001iwt.3_Nonsense_Mutation_p.Q684*|ITGB1_uc001iwu.1_Nonsense_Mutation_p.Q684*	NM_133376	NP_596867	P05556	ITB1_HUMAN	integrin beta 1 isoform 1A precursor	684	Extracellular (Potential).				axon guidance|blood coagulation|cell-cell adhesion mediated by integrin|cell-matrix adhesion|cellular defense response|homophilic cell adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|leukocyte migration|positive regulation of apoptosis|regulation of immune response	cell surface|cleavage furrow|focal adhesion|melanosome|neuromuscular junction|ruffle|sarcolemma	identical protein binding|protein heterodimerization activity|receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(717;1.34e-05)|Breast(68;0.0634)				GGATCAGGTTGGACCGGCTGG	0.428													17	36					0	0	0	0
PARD3	56288	broad.mit.edu	37	10	34805969	34805969	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:34805969G>C	uc010qej.1	-	3	341	c.341C>G	c.(340-342)TCA>TGA	p.S114*	PARD3_uc010qek.1_Nonsense_Mutation_p.S114*|PARD3_uc010qel.1_Nonsense_Mutation_p.S114*|PARD3_uc010qem.1_Nonsense_Mutation_p.S114*|PARD3_uc010qen.1_Nonsense_Mutation_p.S114*|PARD3_uc010qeo.1_Nonsense_Mutation_p.S114*|PARD3_uc010qep.1_Nonsense_Mutation_p.S114*|PARD3_uc010qeq.1_Nonsense_Mutation_p.S114*|PARD3_uc001ixp.1_5'UTR|PARD3_uc001ixq.1_Nonsense_Mutation_p.S114*|PARD3_uc001ixr.1_Nonsense_Mutation_p.S114*|PARD3_uc001ixt.1_5'UTR|PARD3_uc001ixu.1_Nonsense_Mutation_p.S114*	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	114					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CTGAAAGGCTGAGACATTGTT	0.488													19	43					0	0	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654498	38654498	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:38654498C>A	uc010qex.1	+	5	665	c.590C>A	c.(589-591)TCT>TAT	p.S197Y	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.S195Y					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						CCCTACAGCTCTTCCAAATAT	0.488													6	18					8.12818e-05	8.51028e-05	1	0
PCDH15	65217	broad.mit.edu	37	10	55568483	55568483	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:55568483G>A	uc010qhs.1	-	37	5737	c.5342C>T	c.(5341-5343)GCA>GTA	p.A1781V	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.A1774V|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TTCAGAGTTTGCTCCTGGCGA	0.478										HNSCC(58;0.16)			7	17					0	0	0	0
GRID1	2894	broad.mit.edu	37	10	87362282	87362282	+	Silent	SNP	C	G	G	rs3750689		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:87362282C>G	uc001kdl.1	-	16	2879	c.2778G>C	c.(2776-2778)TCG>TCC	p.S926S	GRID1_uc009xsu.1_RNA|GRID1_uc010qmf.1_Silent_p.S497S|uc001kdk.1_Intron	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	926	Cytoplasmic (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	AGGTGCTGACCGAGAGCTGGG	0.657										Multiple Myeloma(13;0.14)			13	45					0	0	0	0
MGMT	4255	broad.mit.edu	37	10	131565174	131565174	+	Silent	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:131565174A>T	uc001lkh.2	+	5	656	c.630A>T	c.(628-630)CCA>CCT	p.P210P		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	179										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		TGGGGAAGCCAGGCTTGGGAG	0.652								Direct_reversal_of_damage					11	40					0	0	0	0
DPYSL4	10570	broad.mit.edu	37	10	134006226	134006226	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:134006226G>A	uc009ybb.2	+	3	347	c.193G>A	c.(193-195)GTC>ATC	p.V65I		NM_006426	NP_006417	O14531	DPYL4_HUMAN	dihydropyrimidinase-like 4	65					axon guidance|pyrimidine base catabolic process	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			central_nervous_system(2)	2		all_cancers(35;4.33e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;7.21e-05)|Epithelial(32;8.01e-05)|all cancers(32;9.29e-05)|BRCA - Breast invasive adenocarcinoma(275;0.206)		CGGCCTGATGGTCCTTCCTGG	0.582													17	69					0	0	0	0
GPR123	84435	broad.mit.edu	37	10	134942302	134942302	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr10:134942302C>A	uc001llx.3	+	7	1406	c.970C>A	c.(970-972)CGC>AGC	p.R324S	GPR123_uc001llw.2_Missense_Mutation_p.R1043S	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	324	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		CTGCCCGCCCCGCAAGGACGC	0.726													19	30					0.00188189	0.00192913	1	0
KCNQ1	3784	broad.mit.edu	37	11	2604772	2604772	+	Silent	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:2604772A>T	uc001lwn.2	+	7	1137	c.1029A>T	c.(1027-1029)CCA>CCT	p.P343P	KCNQ1_uc009ydp.1_Silent_p.P127P|KCNQ1_uc001lwo.2_Silent_p.P216P	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	343	Helical; Name=Segment S6; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	TTGCGCTCCCAGCGGTAGGTG	0.632													29	86					0	0	0	0
OR51B6	390058	broad.mit.edu	37	11	5373442	5373442	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:5373442C>G	uc010qzb.1	+	1	705	c.705C>G	c.(703-705)GCC>GCG	p.A235A	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004750	NP_001004750	Q9H340	O51B6_HUMAN	olfactory receptor, family 51, subfamily B,	235	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGGCCAAGGCCCTCAACACAT	0.428													37	88					0	0	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624484	5624484	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:5624484A>T	uc001mbf.2	+	2	270	c.26A>T	c.(25-27)CAG>CTG	p.Q9L	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_5'UTR|TRIM6_uc010qzj.1_Intron|TRIM6_uc001mbc.1_5'UTR|TRIM6_uc001mbe.2_Intron|TRIM6_uc010qzk.1_Intron|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Missense_Mutation_p.Q9L|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	9						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		AGGATTCTACAGGCAGGAAAC	0.473													11	28					0	0	0	0
OR56B4	196335	broad.mit.edu	37	11	6129115	6129115	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:6129115C>A	uc010qzx.1	+	1	107	c.107C>A	c.(106-108)CCC>CAC	p.P36H		NM_001005181	NP_001005181	Q8NH76	O56B4_HUMAN	olfactory receptor, family 56, subfamily B,	36	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.31e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTCTCCCTGCCCCTGACTCTG	0.507													24	68					5.60225e-13	6.6147e-13	1	0
CCKBR	887	broad.mit.edu	37	11	6292696	6292696	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:6292696G>C	uc001mcp.2	+	5	1460	c.1267G>C	c.(1267-1269)GAG>CAG	p.E423Q	CCKBR_uc001mcq.2_Missense_Mutation_p.E351Q|CCKBR_uc001mcr.2_Missense_Mutation_p.E406Q|CCKBR_uc001mcs.2_Missense_Mutation_p.E492Q	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	423	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	TCTTCCCGATGAGGACCCTCC	0.652													26	59					0	0	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111450	7111450	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:7111450C>T	uc001mfc.2	+	1	1286	c.1099C>T	c.(1099-1101)CGG>TGG	p.R367W		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	367	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TTCTTACAGCCGGTCAGGCTG	0.657													4	12					0	0	0	0
MRVI1	10335	broad.mit.edu	37	11	10647888	10647888	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:10647888C>T	uc010rcc.1	-	9	1379	c.993G>A	c.(991-993)GGG>GGA	p.G331G	MRVI1_uc001miw.2_Silent_p.G322G|MRVI1_uc010rcb.1_Silent_p.G323G|MRVI1_uc009ygb.1_Silent_p.G16G|MRVI1_uc001mix.2_Silent_p.G16G|MRVI1_uc001miz.2_Silent_p.G240G|MRVI1_uc009ygc.1_Silent_p.G240G|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_Silent_p.G16G|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	304					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		AGAGCTGCTTCCCCAGCTCGC	0.647													6	21					0	0	0	0
IGSF22	283284	broad.mit.edu	37	11	18741340	18741340	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:18741340A>T	uc009yht.2	-	7	809	c.619T>A	c.(619-621)TGC>AGC	p.C207S	IGSF22_uc001mpa.2_RNA	NM_173588	NP_775859	Q8N9C0	IGS22_HUMAN	immunoglobulin superfamily, member 22	207	Lys-rich.									ovary(4)|large_intestine(2)|kidney(1)	7						TACTCCATGCACACCTTCTCA	0.507													64	207					0	0	0	0
KCNA4	3739	broad.mit.edu	37	11	30033372	30033373	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:30033372_30033373GG>TT	uc001msk.2	-	2	2005_2006	c.853_854CC>AA	c.(853-855)CCC>AAC	p.P285N		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	285						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTCATTCTCGGGGAGGGCCCTG	0.515													14	34					0	0	0	0
OR4A15	81328	broad.mit.edu	37	11	55135910	55135910	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:55135910C>A	uc010rif.1	+	1	551	c.551C>A	c.(550-552)TCA>TAA	p.S184*		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	184	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TTTCTTCACTCATTGGTTCAA	0.428													45	141					2.77807e-22	3.63972e-22	1	0
OR5D16	390144	broad.mit.edu	37	11	55606889	55606889	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:55606889C>T	uc010rio.1	+	1	662	c.662C>T	c.(661-663)GCA>GTA	p.A221V		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				ACATCTTATGCATTCATCATT	0.468													23	80					0	0	0	0
OR5M1	390168	broad.mit.edu	37	11	56380683	56380683	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:56380683G>T	uc001nja.1	-	1	296	c.296C>A	c.(295-297)ACA>AAA	p.T99K		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AAGACACTGTGTGAAGCATCC	0.443													24	87					0.000147802	0.000154091	1	0
LRRC55	219527	broad.mit.edu	37	11	56954744	56954744	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:56954744C>A	uc001njl.1	+	2	963	c.816C>A	c.(814-816)GGC>GGA	p.G272G	LRRC55_uc001njm.1_5'Flank	NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	242	LRRCT.					integral to membrane					0						AGTGCCGGGGCCCTCCTGAAG	0.587													35	124					3.09479e-21	4.0224e-21	1	0
CTNND1	1500	broad.mit.edu	37	11	57578936	57578936	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:57578936C>G	uc001nmc.3	+	17	3187	c.2616C>G	c.(2614-2616)CTC>CTG	p.L872L	CTNND1_uc001nlh.1_Silent_p.L872L|CTNND1_uc001nlu.3_Silent_p.L765L|CTNND1_uc001nlt.3_Silent_p.L765L|CTNND1_uc001nls.3_Silent_p.L765L|CTNND1_uc001nlw.3_Silent_p.L765L|CTNND1_uc001nmf.3_Silent_p.L872L|CTNND1_uc001nmd.3_Silent_p.L818L|CTNND1_uc001nlk.3_Silent_p.L818L|CTNND1_uc001nme.3_Silent_p.L866L|CTNND1_uc001nll.3_Silent_p.L812L|CTNND1_uc001nmg.3_Silent_p.L812L|CTNND1_uc001nlj.3_Silent_p.L812L|CTNND1_uc001nlr.3_Silent_p.L812L|CTNND1_uc001nlp.3_Silent_p.L812L|CTNND1_uc001nlx.3_Silent_p.L549L|CTNND1_uc001nlz.3_Silent_p.L549L|CTNND1_uc009ymn.2_Silent_p.L543L|CTNND1_uc001nlm.3_Silent_p.L866L|CTNND1_uc001nly.3_Silent_p.L543L|CTNND1_uc001nmb.3_Silent_p.L543L|CTNND1_uc001nma.3_Silent_p.L543L|CTNND1_uc001nmi.3_Silent_p.L771L|CTNND1_uc001nmh.3_Silent_p.L866L|CTNND1_uc001nlq.3_Silent_p.L771L|CTNND1_uc001nln.3_Silent_p.L866L|CTNND1_uc001nli.3_Silent_p.L866L|CTNND1_uc001nlo.3_Silent_p.L765L|CTNND1_uc001nlv.3_Silent_p.L765L	NM_001085458	NP_001078927	O60716	CTND1_HUMAN	catenin, delta 1 isoform 1ABC	872					adherens junction organization|cell junction assembly|negative regulation of canonical Wnt receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	cytosol|midbody|nucleus	cadherin binding|protein binding|receptor binding			breast(4)|ovary(1)|kidney(1)	6		all_epithelial(135;0.155)				CTCTCCCTCTCATTGACCGGA	0.438													54	173					0	0	0	0
LPXN	9404	broad.mit.edu	37	11	58295529	58295529	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:58295529C>A	uc001nmw.2	-	8	1023	c.878G>T	c.(877-879)TGC>TTC	p.C293F	LPXN_uc009ymp.2_Missense_Mutation_p.C163F|LPXN_uc010rkj.1_Missense_Mutation_p.C298F|LPXN_uc010rkk.1_Missense_Mutation_p.C273F	NM_004811	NP_004802	O60711	LPXN_HUMAN	leupaxin isoform 2	293	LIM zinc-binding 3.				cell adhesion|protein complex assembly|signal transduction	cytoplasm	zinc ion binding			ovary(1)	1		Breast(21;0.00725)|all_epithelial(135;0.0101)|all_lung(304;0.24)				ACAAACAAAGCACTCTGGGTG	0.483													17	65					6.33239e-15	7.69943e-15	1	0
MS4A14	84689	broad.mit.edu	37	11	60183000	60183000	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:60183000G>T	uc001npj.2	+	5	1124	c.559G>T	c.(559-561)GAG>TAG	p.E187*	MS4A14_uc001npi.2_Nonsense_Mutation_p.E75*|MS4A14_uc001npn.2_5'UTR|MS4A14_uc001npk.2_Nonsense_Mutation_p.E170*|MS4A14_uc001npl.2_5'UTR|MS4A14_uc001npm.2_5'UTR	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	187						integral to membrane	receptor activity			breast(1)	1						GCTTCAAGAAGAGTTTTCCAG	0.378													22	60					2.37509e-13	2.81791e-13	1	0
RPS6KA4	8986	broad.mit.edu	37	11	64137046	64137046	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:64137046C>A	uc001oae.2	+	13	1640	c.1557C>A	c.(1555-1557)TTC>TTA	p.F519L	RPS6KA4_uc001oad.2_Missense_Mutation_p.F513L|RPS6KA4_uc010rnl.1_Missense_Mutation_p.F456L|RPS6KA4_uc001oaf.2_Missense_Mutation_p.F512L|RPS6KA4_uc009ypp.2_Intron	NM_003942	NP_003933	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	519	Protein kinase 2.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			lung(3)|ovary(1)|breast(1)	5						CCGTGAGCTTCATGCACGAGG	0.721													4	13					0.00909568	0.0092275	1	0
ARL2	402	broad.mit.edu	37	11	64786169	64786169	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:64786169C>G	uc001och.3	+	3	397	c.303C>G	c.(301-303)GAC>GAG	p.D101E	ARL2_uc010rnu.1_Missense_Mutation_p.D101E|SNX15_uc001oci.3_5'UTR	NM_001667	NP_001658	P36404	ARL2_HUMAN	ADP-ribosylation factor-like 2	101					cell cycle|centrosome organization|maintenance of protein location in nucleus|negative regulation of GTPase activity|positive regulation of cell-substrate adhesion|positive regulation of microtubule polymerization|small GTPase mediated signal transduction|tight junction assembly|tubulin complex assembly	centrosome|lateral plasma membrane|mitochondrial intermembrane space|nucleus	GTP binding|GTPase activity|GTPase inhibitor activity|protein binding				0						GCATGCAGGACTGCCAGCGGG	0.617													9	32					0	0	0	0
PAAF1	80227	broad.mit.edu	37	11	73625542	73625542	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:73625542G>T	uc001ouk.1	+	8	846	c.812G>T	c.(811-813)AGG>ATG	p.R271M	PAAF1_uc001oul.1_Missense_Mutation_p.R254M|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Missense_Mutation_p.R254M	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	271					interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					CTACAGAGCAGGCAGCTGGCA	0.478													15	74					2.62699e-14	3.16271e-14	1	0
LRRC32	2615	broad.mit.edu	37	11	76372274	76372274	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:76372274G>A	uc001oxq.3	-	3	606	c.363C>T	c.(361-363)GGC>GGT	p.G121G	LRRC32_uc001oxr.3_Silent_p.G121G|LRRC32_uc010rsf.1_Silent_p.G121G	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	121	Extracellular (Potential).					integral to plasma membrane					0						GTGGCAGGGGGCCCAGGCCAC	0.692													33	61					0	0	0	0
MTMR2	8898	broad.mit.edu	37	11	95582947	95582947	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:95582947C>T	uc001pfu.2	-	9	1137	c.884G>A	c.(883-885)CGA>CAA	p.R295Q	MTMR2_uc001pfv.2_Missense_Mutation_p.R223Q|MTMR2_uc001pfs.2_Missense_Mutation_p.R223Q|MTMR2_uc001pft.2_Missense_Mutation_p.R223Q|MTMR2_uc010ruj.1_Missense_Mutation_p.R278Q	NM_016156	NP_057240	Q13614	MTMR2_HUMAN	myotubularin-related protein 2 isoform 1	295	Myotubularin phosphatase.					nucleus	inositol or phosphatidylinositol phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				TTCTTTGCTTCGCTTTCCACT	0.413													53	76					0	0	0	0
MTMR2	8898	broad.mit.edu	37	11	95583015	95583015	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:95583015C>G	uc001pfu.2	-	9	1069	c.816G>C	c.(814-816)TGG>TGC	p.W272C	MTMR2_uc001pfv.2_Missense_Mutation_p.W200C|MTMR2_uc001pfs.2_Missense_Mutation_p.W200C|MTMR2_uc001pft.2_Missense_Mutation_p.W200C|MTMR2_uc010ruj.1_Missense_Mutation_p.W255C	NM_016156	NP_057240	Q13614	MTMR2_HUMAN	myotubularin-related protein 2 isoform 1	272	Myotubularin phosphatase.					nucleus	inositol or phosphatidylinositol phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			pancreas(1)	1		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CAGGATGAATCCATGATAAAA	0.383													24	42					0	0	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110450633	110450633	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:110450633G>T	uc001pkz.1	-	16	3322	c.3037C>A	c.(3037-3039)CCA>ACA	p.P1013T	ARHGAP20_uc001pky.1_Missense_Mutation_p.P990T|ARHGAP20_uc009yyb.1_Missense_Mutation_p.P977T|ARHGAP20_uc001pla.1_Missense_Mutation_p.P977T|ARHGAP20_uc001plb.2_Missense_Mutation_p.P556T	NM_020809	NP_065860	Q9P2F6	RHG20_HUMAN	Rho GTPase activating protein 20	1013					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)|kidney(2)	5		all_cancers(61;3.26e-12)|all_epithelial(67;6.09e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;0.000484)|Acute lymphoblastic leukemia(157;0.000967)|all_neural(223;0.0199)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;3.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.24e-05)|all cancers(92;0.000147)|OV - Ovarian serous cystadenocarcinoma(223;0.0475)		GTATAGGCTGGGCGGCTGCAA	0.512													13	32					6.31663e-08	6.89342e-08	1	0
KCNJ1	3758	broad.mit.edu	37	11	128709451	128709451	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:128709451T>C	uc001qeo.1	-	2	796	c.745A>G	c.(745-747)ATC>GTC	p.I249V	KCNJ1_uc001qep.1_Missense_Mutation_p.I230V|KCNJ1_uc001qeq.1_Missense_Mutation_p.I230V|KCNJ1_uc001qer.1_Missense_Mutation_p.I230V|KCNJ1_uc001qes.1_Missense_Mutation_p.I230V	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	249	Cytoplasmic (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	ACAAAGTTGATATTGATCTGG	0.413													29	76					0	0	0	0
ST14	6768	broad.mit.edu	37	11	130059706	130059706	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:130059706C>T	uc001qfw.2	+	5	706	c.513C>T	c.(511-513)CGC>CGT	p.R171R	ST14_uc010sca.1_5'Flank	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	171	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	AGGCCGAGCGCGTCATGGCCG	0.677													24	102					0	0	0	0
GLB1L3	112937	broad.mit.edu	37	11	134163103	134163103	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:134163103G>A	uc009zdf.2	+	9	1236	c.876G>A	c.(874-876)CAG>CAA	p.Q292Q	GLB1L3_uc010scs.1_Silent_p.Q292Q|GLB1L3_uc010sct.1_Silent_p.Q144Q|GLB1L3_uc010scu.1_5'UTR	NM_001080407	NP_001073876	Q8NCI6	GLBL3_HUMAN	galactosidase, beta 1 like 3	292					carbohydrate metabolic process		cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			pancreas(1)	1	all_hematologic(175;0.127)	all_cancers(12;5.52e-23)|all_epithelial(12;2.15e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000162)|all_neural(223;0.0182)|Medulloblastoma(222;0.0208)|Esophageal squamous(93;0.0559)		Epithelial(10;1.3e-11)|all cancers(11;2.07e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000873)|Lung(977;0.222)		ATAAAGTCCAGGTAAGACATT	0.458													9	18					0	0	0	0
CACNA1C	775	broad.mit.edu	37	12	2614034	2614034	+	Nonsense_Mutation	SNP	G	A	A	rs1051347		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:2614034G>A	uc009zdu.1	+	8	1453	c.1140G>A	c.(1138-1140)TGG>TGA	p.W380*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.W377*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.W380*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkn.2_Intron|CACNA1C_uc001qko.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.W380*|CACNA1C_uc001qka.1_Intron|CACNA1C_uc001qki.1_Intron|CACNA1C_uc001qkj.1_Intron|CACNA1C_uc001qkk.1_Intron|CACNA1C_uc001qkm.1_Intron|CACNA1C_uc009zdy.1_Intron|CACNA1C_uc001qkv.1_5'UTR	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	380	I.|Extracellular (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	GAAGGGACTGGCCCTGGATCT	0.512													9	22					0	0	0	0
C12orf4	57102	broad.mit.edu	37	12	4634429	4634429	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:4634429C>T	uc001qms.2	-	6	807	c.719G>A	c.(718-720)AGC>AAC	p.S240N	C12orf4_uc001qmt.2_Missense_Mutation_p.S240N	NM_020374	NP_065107	Q9NQ89	CL004_HUMAN	hypothetical protein LOC57102	240											0			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)	BRCA - Breast invasive adenocarcinoma(232;0.0281)		CCTAAGGGAGCTGTTGTTGGG	0.313													25	92					0	0	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6422904	6422904	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:6422904A>C	uc001qnr.2	+	3	396	c.248A>C	c.(247-249)CAC>CCC	p.H83P	PLEKHG6_uc001qns.2_Missense_Mutation_p.H83P|PLEKHG6_uc010sew.1_Missense_Mutation_p.H83P|PLEKHG6_uc010sex.1_Missense_Mutation_p.H51P	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	83					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						GAGAAGAGGCACGGGGGCCAT	0.647													18	81					0	0	0	0
CSDA	8531	broad.mit.edu	37	12	10862544	10862544	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:10862544C>G	uc001qyt.2	-	6	986	c.743G>C	c.(742-744)CGT>CCT	p.R248P	CSDA_uc001qyu.2_Intron	NM_003651	NP_003642	P16989	DBPA_HUMAN	cold shock domain protein A isoform a	248					negative regulation of transcription from RNA polymerase II promoter|response to cold	cytoplasm|nucleus	double-stranded DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)|lung(1)|large_intestine(1)	4	Glioma(1;0.155)					CCGTGAGCGACGGTCAAAGGT	0.542													18	56					0	0	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18499618	18499618	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:18499618C>A	uc001rdt.2	+	11	1589	c.1473C>A	c.(1471-1473)TAC>TAA	p.Y491*	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Nonsense_Mutation_p.Y491*|PIK3C2G_uc010sic.1_Nonsense_Mutation_p.Y269*	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	491					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CATCCATCTACCAGCTAATCA	0.418													36	108					2.24893e-16	2.78982e-16	1	0
ITPR2	3709	broad.mit.edu	37	12	26647123	26647123	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:26647123C>A	uc001rhg.2	-	39	5750	c.5333G>T	c.(5332-5334)GGC>GTC	p.G1778V	ITPR2_uc009zjg.1_5'UTR	NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	1778	Cytoplasmic (Potential).				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					CAAGGCAATGCCGAGGAAAAT	0.373													19	55					1.50039e-11	1.73394e-11	1	0
KIF21A	55605	broad.mit.edu	37	12	39695465	39695465	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:39695465T>A	uc001rly.2	-	37	4894	c.4748A>T	c.(4747-4749)CAT>CTT	p.H1583L	KIF21A_uc001rlv.2_Missense_Mutation_p.H528L|KIF21A_uc001rlw.2_Missense_Mutation_p.H853L|KIF21A_uc001rlx.2_Missense_Mutation_p.H1570L|KIF21A_uc001rlz.2_Missense_Mutation_p.H1530L|KIF21A_uc010skl.1_Missense_Mutation_p.H1546L|KIF21A_uc001rlt.2_Missense_Mutation_p.H203L|KIF21A_uc001rlu.2_Missense_Mutation_p.H203L	NM_017641	NP_060111	Q7Z4S6	KI21A_HUMAN	kinesin family member 21A	1583	WD 6.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(4)|pancreas(1)|lung(1)|skin(1)	7		Lung NSC(34;0.179)|all_lung(34;0.213)				CCAATCCTTATGTGCATTTGG	0.418													74	221					0	0	0	0
LRRK2	120892	broad.mit.edu	37	12	40749922	40749922	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:40749922A>G	uc001rmg.3	+	46	6897	c.6776A>G	c.(6775-6777)CAA>CGA	p.Q2259R	LRRK2_uc009zjw.2_Missense_Mutation_p.Q1097R|LRRK2_uc001rmi.2_Missense_Mutation_p.Q1092R	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	2259					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TTTAGCAAACAAAAAAATTTT	0.214													4	11					0	0	0	0
SRGAP1	57522	broad.mit.edu	37	12	64521798	64521798	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:64521798C>A	uc010ssp.1	+	21	2754	c.2698C>A	c.(2698-2700)CGT>AGT	p.R900S	SRGAP1_uc001srv.2_Missense_Mutation_p.R837S	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	900					axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		GCTGCAGAACCGTGGCCTCAA	0.632													15	47					4.14922e-12	4.82926e-12	1	0
TRHDE	29953	broad.mit.edu	37	12	72956773	72956773	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:72956773C>G	uc001sxa.2	+	9	1890	c.1860C>G	c.(1858-1860)ATC>ATG	p.I620M		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	620	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						AGCATTTTATCTATGATATCA	0.318													29	76					0	0	0	0
LIN7A	8825	broad.mit.edu	37	12	81205380	81205380	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:81205380G>A	uc001szj.1	-	5	759	c.566C>T	c.(565-567)ACC>ATC	p.T189I	LIN7A_uc001szk.1_RNA	NM_004664	NP_004655	O14910	LIN7A_HUMAN	lin-7 homolog A	189	PDZ.				exocytosis|protein complex assembly|protein transport	basolateral plasma membrane|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	L27 domain binding			ovary(1)|skin(1)	2						AACTTTTGGGGTGTATCGCAC	0.443													12	43					0	0	0	0
CCDC41	51134	broad.mit.edu	37	12	94725487	94725487	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:94725487C>T	uc001tdd.2	-	14	2282	c.1696G>A	c.(1696-1698)GCC>ACC	p.A566T	CCDC41_uc001tde.2_Missense_Mutation_p.A566T|CCDC41_uc009zsw.1_RNA	NM_016122	NP_057206	Q9Y592	CCD41_HUMAN	NY-REN-58 antigen	558	Potential.										0						TTTTTCTGGGCAATTGCAGCT	0.289													39	151					0	0	0	0
VEZT	55591	broad.mit.edu	37	12	95660293	95660293	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:95660293A>G	uc001tdz.2	+	5	700	c.595A>G	c.(595-597)AAA>GAA	p.K199E	VEZT_uc009zsy.1_Missense_Mutation_p.K41E|VEZT_uc001tdr.2_Missense_Mutation_p.K41E|VEZT_uc001tds.2_Missense_Mutation_p.K151E|VEZT_uc001tdt.2_Missense_Mutation_p.K151E|VEZT_uc009zsz.1_Missense_Mutation_p.K199E|VEZT_uc001tdv.2_Missense_Mutation_p.K168E|VEZT_uc001tdw.1_Missense_Mutation_p.K151E|VEZT_uc009zta.1_Missense_Mutation_p.K151E	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	199						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						GACCCTAAAAAAATACAGCGT	0.418													30	99					0	0	0	0
AMDHD1	144193	broad.mit.edu	37	12	96360158	96360158	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:96360158G>A	uc001tel.1	+	8	1171	c.1065G>A	c.(1063-1065)ATG>ATA	p.M355I	AMDHD1_uc009zth.1_Missense_Mutation_p.M246I	NM_152435	NP_689648	Q96NU7	HUTI_HUMAN	amidohydrolase domain containing 1	355					histidine catabolic process to glutamate and formamide	cytosol	imidazolonepropionase activity|metal ion binding			central_nervous_system(1)	1						GTGTAAACATGAGAATGTCCA	0.478													20	63					0	0	0	0
APPL2	55198	broad.mit.edu	37	12	105569861	105569861	+	Splice_Site	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:105569861C>T	uc001tlf.1	-	20	2031	c.1813_splice	c.e20-1	p.I605_splice	APPL2_uc010swt.1_Splice_Site_p.I562_splice|APPL2_uc001tlg.1_Splice_Site_p.I359_splice|APPL2_uc010swu.1_Splice_Site_p.I611_splice	NM_018171	NP_060641	Q8NEU8	DP13B_HUMAN	adaptor protein, phosphotyrosine interaction, PH						cell cycle|cell proliferation|signal transduction	early endosome membrane|nucleus	protein binding			upper_aerodigestive_tract(1)	1						CATAACATATCTGCAAAAGAC	0.353													12	39					0	0	0	0
ACACB	32	broad.mit.edu	37	12	109609642	109609642	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:109609642G>T	uc001tob.2	+	5	1077	c.958G>T	c.(958-960)GTC>TTC	p.V320F	ACACB_uc001toc.2_Missense_Mutation_p.V320F	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	320	Biotin carboxylation.				acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	TTACGTCCCCGTCCCAGGAGG	0.502													11	51					0.00010058	0.000105083	1	0
GLTP	51228	broad.mit.edu	37	12	110290415	110290415	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:110290415T>C	uc001tpm.2	-	5	689	c.575A>G	c.(574-576)GAT>GGT	p.D192G	GLTP_uc010sxt.1_RNA	NM_016433	NP_057517	Q9NZD2	GLTP_HUMAN	glycolipid transfer protein	192						cytoplasm	glycolipid binding|glycolipid transporter activity				0		Lung NSC(355;2.38e-06)|Breast(359;0.00354)|Myeloproliferative disorder(1001;0.0122)		BRCA - Breast invasive adenocarcinoma(302;0.0025)		GTAGATGACATCGATGGTCGC	0.552											OREG0022112	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	107	391					0	0	0	0
CLIP1	6249	broad.mit.edu	37	12	122794336	122794336	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:122794336G>T	uc001ucg.1	-	19	3673	c.3567C>A	c.(3565-3567)AGC>AGA	p.S1189R	CLIP1_uc001uch.1_Missense_Mutation_p.S1178R|CLIP1_uc001uci.1_Missense_Mutation_p.S1143R|CLIP1_uc001ucj.1_Missense_Mutation_p.S764R	NM_002956	NP_002947	P30622	CLIP1_HUMAN	restin isoform a	1189	Potential.				mitotic prometaphase|positive regulation of microtubule polymerization	centrosome|cytosol|endosome|intermediate filament|kinetochore	nucleic acid binding|protein homodimerization activity|zinc ion binding			ovary(2)|breast(1)	3	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.81e-05)|Epithelial(86;6.85e-05)|BRCA - Breast invasive adenocarcinoma(302;0.226)		CTTCGTCCCTGCTTCTCCCCA	0.552													14	61					2.48551e-13	2.94178e-13	1	0
EP400NL	347918	broad.mit.edu	37	12	132611248	132611248	+	RNA	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:132611248A>T	uc001ujx.1	+	7		c.2154A>T								Homo sapiens cDNA FLJ33915 fis, clone CTONG2016658.												0						CAGTCGCTGAAGCAGTCACAC	0.537													8	19					0	0	0	0
P2RX2	22953	broad.mit.edu	37	12	133197632	133197632	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:133197632C>A	uc001ukj.1	+	8	820	c.820C>A	c.(820-822)CTG>ATG	p.L274M	P2RX2_uc001uki.1_Missense_Mutation_p.L274M|P2RX2_uc001ukk.1_Missense_Mutation_p.L274M|P2RX2_uc001ukl.1_Missense_Mutation_p.L250M|P2RX2_uc001ukm.1_Missense_Mutation_p.L202M|P2RX2_uc001ukn.1_Missense_Mutation_p.L182M|P2RX2_uc009zyt.1_Missense_Mutation_p.L274M|P2RX2_uc001uko.1_Missense_Mutation_p.L240M	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	274	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		TGACCTGGACCTGCCTGCATC	0.602													27	84					1.16021e-09	1.30092e-09	1	0
DCLK1	9201	broad.mit.edu	37	13	36410270	36410270	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr13:36410270C>T	uc001uvf.2	-	8	1362	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	DCLK1_uc001uve.3_Missense_Mutation_p.E70K|DCLK1_uc010teh.1_Missense_Mutation_p.E70K|DCLK1_uc010abk.2_Intron	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	377					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		AAGCCTTCCTCCGACACTTCT	0.358													27	90					0	0	0	0
POSTN	10631	broad.mit.edu	37	13	38151925	38151925	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr13:38151925C>A	uc001uwo.3	-	16	2091	c.1973G>T	c.(1972-1974)GGT>GTT	p.G658V	POSTN_uc010tet.1_Missense_Mutation_p.G186V|POSTN_uc001uwp.3_Missense_Mutation_p.G658V|POSTN_uc001uwr.2_Missense_Mutation_p.G658V|POSTN_uc001uwq.2_Missense_Mutation_p.G658V|POSTN_uc010teu.1_Missense_Mutation_p.G658V|POSTN_uc010tev.1_Missense_Mutation_p.G658V|POSTN_uc010tew.1_Missense_Mutation_p.G658V	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	658					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		GAAGGTGCTACCACGAACAAA	0.318													11	19					6.49762e-13	7.63509e-13	1	0
TRPC4	7223	broad.mit.edu	37	13	38211293	38211293	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr13:38211293C>A	uc001uws.2	-	11	2916	c.2681G>T	c.(2680-2682)CGG>CTG	p.R894L	TRPC4_uc010abv.2_Missense_Mutation_p.R474L|TRPC4_uc001uwt.2_Missense_Mutation_p.R810L|TRPC4_uc010tey.1_Missense_Mutation_p.R753L|TRPC4_uc010abw.2_Missense_Mutation_p.R721L|TRPC4_uc010abx.2_Missense_Mutation_p.R899L|TRPC4_uc010aby.2_Missense_Mutation_p.R745L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	894	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CAGGTCACCCCGTGAAGCTAA	0.468													18	47					3.32936e-07	3.58546e-07	1	0
LMO7	4008	broad.mit.edu	37	13	76414620	76414620	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr13:76414620C>T	uc001vjv.2	+	19	3632	c.2872C>T	c.(2872-2874)CGC>TGC	p.R958C	LMO7_uc010thv.1_Missense_Mutation_p.R909C|LMO7_uc001vjt.1_Missense_Mutation_p.R857C|LMO7_uc010thw.1_Missense_Mutation_p.R835C|LMO7_uc001vjw.1_Missense_Mutation_p.R864C	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1243						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		GGAGCAGGACCGCCTACTGCA	0.542													7	27					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109792671	109792671	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr13:109792671C>A	uc001vqt.1	+	32	4171	c.4045C>A	c.(4045-4047)CGA>AGA	p.R1349R	MYO16_uc010agk.1_Silent_p.R1371R	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	1349					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			GATTCCTCCTCGAAAGCCCAA	0.512													14	23					2.35188e-11	2.69888e-11	1	0
Unknown	0	broad.mit.edu	37	14	28733956	28733956	+	Missense_Mutation	SNP	G	A	A	rs10145770	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:28733956G>A	uc001wqd.2	+	1	337	c.197G>A	c.(196-198)AGC>AAC	p.S66N						SubName: Full=cDNA FLJ60537, highly similar to BCL2/adenovirus E1B 19 kDa protein-interacting protein 3;																		CACTGTGACAGCCCACCTCGC	0.473													15	66					0	0	0	0
MIA2	117153	broad.mit.edu	37	14	39721980	39721980	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:39721980G>A	uc001wux.2	+	5	1790	c.1596G>A	c.(1594-1596)ACG>ACA	p.T532T		NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	Error:Variant_position_missing_in_Q96PC5_after_alignment						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		AGTTACCTACGAGAATTCACG	0.368													19	48					0	0	0	0
LRFN5	145581	broad.mit.edu	37	14	42356278	42356278	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:42356278G>T	uc001wvm.2	+	3	1648	c.450G>T	c.(448-450)GAG>GAT	p.E150D	LRFN5_uc010ana.2_Missense_Mutation_p.E150D	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	150	Extracellular (Potential).|LRR 5.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TCGCCCTTGAGGAGCTGGATC	0.393										HNSCC(30;0.082)			21	49					1.28384e-07	1.39486e-07	1	0
LRFN5	145581	broad.mit.edu	37	14	42356945	42356945	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:42356945C>G	uc001wvm.2	+	3	2315	c.1117C>G	c.(1117-1119)CAT>GAT	p.H373D	LRFN5_uc010ana.2_Missense_Mutation_p.H373D	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	373	Extracellular (Potential).|Ig-like.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		AGTGGATCTTCATATAATTAA	0.403										HNSCC(30;0.082)			19	50					0	0	0	0
POLE2	5427	broad.mit.edu	37	14	50136312	50136312	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:50136312G>T	uc001wwu.2	-	6	436	c.422C>A	c.(421-423)ACC>AAC	p.T141N	SDCCAG1_uc010anj.1_Intron|POLE2_uc001wwv.2_RNA	NM_002692	NP_002683	P56282	DPOE2_HUMAN	DNA-directed DNA polymerase epsilon 2	141					DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity			ovary(1)|skin(1)	2	all_epithelial(31;0.0021)|Breast(41;0.0124)					ATGCCTGTGGGTCCTCTATAA	0.373													13	42					0.000219431	0.0002278	1	0
GPR65	8477	broad.mit.edu	37	14	88477767	88477767	+	Silent	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:88477767T>C	uc001xvv.2	+	2	1106	c.576T>C	c.(574-576)TAT>TAC	p.Y192Y		NM_003608	NP_003599	Q8IYL9	PSYR_HUMAN	G protein-coupled receptor 65	192	Helical; Name=5; (Potential).				actin cytoskeleton reorganization|activation of Rho GTPase activity|apoptosis|immune response|multicellular organismal development|positive regulation of cAMP biosynthetic process|positive regulation of stress fiber assembly|response to acidity	integral to plasma membrane	G-protein coupled receptor activity				0						GTACAGGCTATGCAATACCTT	0.413													20	58					0	0	0	0
BDKRB1	623	broad.mit.edu	37	14	96730747	96730747	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:96730747G>T	uc001yfh.2	+	3	936	c.728G>T	c.(727-729)CGC>CTC	p.R243L	BDKRB1_uc010avn.2_Intron	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	243	Cytoplasmic (Potential).			CGGR -> VRGP (in Ref. 1, 2 and 3).	elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		TGCGGGGGCCGCAAGGATAGC	0.587													19	57					2.35188e-11	2.69888e-11	1	0
ADAM6	8755	broad.mit.edu	37	14	106494149	106494149	+	RNA	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:106494149A>G	uc010tyt.1	-	1760		c.34849T>C								Parts of antibodies, mostly variable regions.												0						TGTGCACAGTAATATGTGGCT	0.542													26	74					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106691817	106691817	+	RNA	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:106691817G>T	uc010tyt.1	-	754		c.20546C>A								Parts of antibodies, mostly variable regions.												0						TACTACTAATGGATGAGACCC	0.512													56	203					1.4709e-25	1.96387e-25	1	0
LOC646214	646214	broad.mit.edu	37	15	21937224	21937224	+	RNA	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:21937224G>C	uc010tzj.1	-	1		c.3516C>G				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AACTATGTTGGGATTTTTTAA	0.378													18	86					0	0	0	0
Unknown	0	broad.mit.edu	37	15	22483116	22483116	+	IGR	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:22483116A>T								OR4N3P (68731 upstream) : MIR1268 (30113 downstream)																							CCCAGACTGCACCAACTGGTC	0.517													18	29					0	0	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889873	23889873	+	Missense_Mutation	SNP	G	C	C	rs138628273	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:23889873G>C	uc001ywj.3	-	1	1303	c.1208C>G	c.(1207-1209)ACC>AGC	p.T403S		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		ATTATCCTGGGTGGCACTGGA	0.587													6	25					0	0	0	0
SNORD115-5	100033442	broad.mit.edu	37	15	25423759	25423759	+	5'Flank	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:25423759A>T	uc001yyv.1	+						uc001yys.1_RNA|SNORD115-7_uc001yyw.1_5'Flank|SNORD115-6_uc001yyx.1_5'Flank	NR_003304				Homo sapiens small nucleolar RNA, C/D box 115-5 (SNORD115-5), non-coding RNA.												0						GTTGTCATCCAGGTGCCCAGC	0.617													5	5					0	0	0	0
Unknown	0	broad.mit.edu	37	15	28900697	28900697	+	RNA	SNP	A	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:28900697A>C	uc010uan.1	+	3		c.628A>C			uc010azc.2_Intron|uc010uao.1_RNA					Homo sapiens cDNA FLJ55955 complete cds, highly similar to HECT domain and RCC1-like domain-containing protein 2.																		TGCCACCCACAGCAGCACACT	0.622													20	76					0	0	0	0
B2M	567	broad.mit.edu	37	15	45007752	45007752	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:45007752G>T	uc001zuc.2	+	2	259	c.199G>T	c.(199-201)GAA>TAA	p.E67*	B2M_uc010uek.1_Nonsense_Mutation_p.E67*|B2M_uc010bdx.1_Nonsense_Mutation_p.E67*	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	67	Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		AGAGAGAATTGAAAAAGTGGA	0.413													48	81					8.00217e-19	1.00799e-18	1	0
UNC13C	440279	broad.mit.edu	37	15	54305604	54305604	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:54305604C>T	uc002ack.2	+	1	504	c.504C>T	c.(502-504)GAC>GAT	p.D168D		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	168					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCAGCTCTGACGGGGAGCGTA	0.473													25	61					0	0	0	0
TLN2	83660	broad.mit.edu	37	15	63092597	63092597	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:63092597G>T	uc002alb.3	+	46	6265	c.6265G>T	c.(6265-6267)GCC>TCC	p.A2089S	TLN2_uc002alc.3_Missense_Mutation_p.A482S	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2089					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						CAAAGATGTGGCCAAGGCCCT	0.537													35	127					2.0683e-36	2.89561e-36	1	0
SLC24A1	9187	broad.mit.edu	37	15	65917057	65917057	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:65917057G>A	uc010ujf.1	+	2	926	c.639G>A	c.(637-639)GCG>GCA	p.A213A	SLC24A1_uc010ujd.1_Silent_p.A213A|SLC24A1_uc010uje.1_Silent_p.A213A|SLC24A1_uc010ujg.1_Silent_p.A213A|SLC24A1_uc010ujh.1_Silent_p.A213A	NM_004727	NP_004718	O60721	NCKX1_HUMAN	solute carrier family 24	213	Extracellular (Potential).				response to light intensity|visual perception	integral to plasma membrane|membrane fraction|outer membrane	calcium, potassium:sodium antiporter activity|protein binding|symporter activity				0						CAAGCCATGCGATCACCCCCA	0.458													8	11					0	0	0	0
ARNT2	9915	broad.mit.edu	37	15	80872831	80872831	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:80872831C>T	uc002bfr.2	+	16	1859	c.1693C>T	c.(1693-1695)CGG>TGG	p.R565W	ARNT2_uc010unm.1_Missense_Mutation_p.R554W|ARNT2_uc002bfs.2_Missense_Mutation_p.R554W	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	565					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			CCAAATCTCCCGGCAGCTAAA	0.542													16	61					0	0	0	0
SH3GL3	6457	broad.mit.edu	37	15	84245351	84245351	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:84245351T>A	uc002bjw.2	+	6	677	c.482T>A	c.(481-483)CTG>CAG	p.L161Q	SH3GL3_uc010uot.1_Missense_Mutation_p.L161Q|SH3GL3_uc002bjx.2_Missense_Mutation_p.L92Q|SH3GL3_uc002bju.2_Missense_Mutation_p.L169Q|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	161	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						CTGAAAAAGCTGGAAGGCCGC	0.393													7	23					0	0	0	0
AKAP13	11214	broad.mit.edu	37	15	86283466	86283466	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:86283466G>A	uc002blv.1	+	34	7741	c.7571G>A	c.(7570-7572)AGC>AAC	p.S2524N	AKAP13_uc002blu.1_Missense_Mutation_p.S2528N|AKAP13_uc002blw.1_Missense_Mutation_p.S989N|AKAP13_uc002blx.1_Missense_Mutation_p.S769N	NM_007200	NP_009131	Q12802	AKP13_HUMAN	A-kinase anchor protein 13 isoform 2	2524	Interaction with ESR1.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane|membrane fraction|nucleus	cAMP-dependent protein kinase activity|metal ion binding|protein binding|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			central_nervous_system(3)|kidney(2)|urinary_tract(1)|liver(1)|skin(1)|ovary(1)	9						GTTGTCCAGAGCGTTGTTCAT	0.473													20	45					0	0	0	0
IQGAP1	8826	broad.mit.edu	37	15	91021068	91021068	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:91021068G>T	uc002bpl.1	+	26	3377	c.3276G>T	c.(3274-3276)GTG>GTT	p.V1092V		NM_003870	NP_003861	P46940	IQGA1_HUMAN	IQ motif containing GTPase activating protein 1	1092	Ras-GAP.|C1.				energy reserve metabolic process|regulation of insulin secretion|small GTPase mediated signal transduction	actin filament|cytoplasm|midbody|nucleus|plasma membrane	calmodulin binding|GTPase inhibitor activity|protein phosphatase binding|Ras GTPase activator activity			ovary(2)|lung(2)|central_nervous_system(2)|pancreas(1)|skin(1)	8	Melanoma(11;0.00551)|Lung NSC(78;0.0237)|all_lung(78;0.0488)		BRCA - Breast invasive adenocarcinoma(143;0.0745)|KIRC - Kidney renal clear cell carcinoma(17;0.138)|Kidney(142;0.194)			CTGACCCTGTGGATATTTACA	0.433													22	92					9.39395e-14	1.11996e-13	1	0
LASS3	204219	broad.mit.edu	37	15	101042026	101042026	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:101042026C>A	uc002bvz.2	-	4	531	c.29G>T	c.(28-30)TGG>TTG	p.W10L	LASS3_uc002bwa.2_Missense_Mutation_p.W21L|LASS3_uc002bwb.2_Missense_Mutation_p.W10L	NM_178842	NP_849164	Q8IU89	CERS3_HUMAN	LAG1 longevity assurance homolog 3	10						endoplasmic reticulum membrane|integral to membrane|nuclear membrane	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4	Lung NSC(78;0.0018)|all_lung(78;0.00278)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000867)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)			TCTTTCCAACCAGAACCATTC	0.373													13	53					0.000566183	0.000582836	1	0
C16orf42	115939	broad.mit.edu	37	16	1400112	1400112	+	Missense_Mutation	SNP	G	A	A	rs142109530	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:1400112G>A	uc002cll.2	-	4	718	c.650C>T	c.(649-651)GCG>GTG	p.A217V	GNPTG_uc002clm.2_5'Flank	NM_001001410	NP_001001410	Q9UJK0	TSR3_HUMAN	hypothetical protein LOC115939	217					rRNA processing						0		Hepatocellular(780;0.0893)				CTCCTGCTCCGCCTGCAGCAC	0.647													4	13					0	0	0	0
HS3ST6	64711	broad.mit.edu	37	16	1961835	1961835	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:1961835C>T	uc002cnf.2	-	2	692	c.692G>A	c.(691-693)CGC>CAC	p.R231H		NM_001009606	NP_001009606	C9JH64	C9JH64_HUMAN	heparan sulfate (glucosamine)	231											0						GTCCTGCACGCGGCCGACCTC	0.667													35	95					0	0	0	0
TBL3	10607	broad.mit.edu	37	16	2028594	2028594	+	Missense_Mutation	SNP	G	C	C	rs147301648	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:2028594G>C	uc002cnu.1	+	22	2437	c.2335G>C	c.(2335-2337)GCT>CCT	p.A779P	TBL3_uc002cnv.1_Missense_Mutation_p.A665P|TBL3_uc010bsc.1_Missense_Mutation_p.A646P|TBL3_uc010uvt.1_Missense_Mutation_p.A248P|TBL3_uc002cnw.1_RNA	NM_006453	NP_006444	Q12788	TBL3_HUMAN	transducin beta-like 3	779					G-protein signaling, coupled to cGMP nucleotide second messenger|rRNA processing	nucleolus|small-subunit processome	receptor signaling protein activity				0						CCAGGCCGCCGCTTTCTTGGA	0.672													31	74					0	0	0	0
AMDHD2	51005	broad.mit.edu	37	16	2579489	2579489	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:2579489C>A	uc002cqq.2	+	11	1252	c.1155C>A	c.(1153-1155)CTC>CTA	p.L385L	AMDHD2_uc002cqp.2_Silent_p.L415L|AMDHD2_uc010uwc.1_Silent_p.L415L|AMDHD2_uc010uwd.1_Silent_p.L179L	NM_015944	NP_057028	Q9Y303	NAGA_HUMAN	amidohydrolase domain containing 2 isoform 1	385					N-acetylglucosamine metabolic process		N-acetylglucosamine-6-phosphate deacetylase activity			skin(2)|large_intestine(1)|breast(1)	4						TCGTGGTGCTCGACGACTCCC	0.657													45	197					7.89702e-26	1.06015e-25	1	0
SCNN1G	6340	broad.mit.edu	37	16	23200940	23200940	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:23200940A>G	uc002dlm.1	+	3	705	c.566A>G	c.(565-567)AAG>AGG	p.K189R		NM_001039	NP_001030	P51170	SCNNG_HUMAN	sodium channel, nonvoltage-gated 1, gamma	189	Extracellular (By similarity).				excretion|sensory perception of taste	apical plasma membrane|integral to plasma membrane	ligand-gated sodium channel activity|WW domain binding			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(48;0.0366)	Amiloride(DB00594)|Triamterene(DB00384)	ATCATTCACAAGGCTTCAAAT	0.512													97	283					0	0	0	0
PRKCB	5579	broad.mit.edu	37	16	24192159	24192159	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:24192159G>C	uc002dmd.2	+	13	1640	c.1443G>C	c.(1441-1443)AAG>AAC	p.K481N	PRKCB_uc002dme.2_Missense_Mutation_p.K481N	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	481	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GACACATCAAGATTGCCGATT	0.453													36	125					0	0	0	0
HS3ST4	9951	broad.mit.edu	37	16	26146942	26146942	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:26146942G>T	uc002dof.2	+	2	1136	c.744G>T	c.(742-744)ATG>ATT	p.M248I		NM_006040	NP_006031	Q9Y661	HS3S4_HUMAN	heparan sulfate D-glucosaminyl	248	Lumenal (Potential).				heparan sulfate proteoglycan metabolic process	extracellular region|Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			large_intestine(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.0988)		GAAATGTGATGCCCAAGACTT	0.423													6	23					2.7689e-08	3.04206e-08	1	0
SLC6A10P	386757	broad.mit.edu	37	16	32890606	32890606	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:32890606G>T	uc002edh.1	-	5	456	c.280C>A	c.(280-282)CCG>ACG	p.P94T	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CCCCACCACGGGTACACGTTG	0.567													8	26					0.000274275	0.000284133	1	0
HEATR3	55027	broad.mit.edu	37	16	50118095	50118095	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:50118095G>A	uc002efw.2	+	9	1345	c.1183G>A	c.(1183-1185)GCA>ACA	p.A395T	HEATR3_uc002efx.2_Missense_Mutation_p.A309T	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	395							binding			ovary(1)|skin(1)	2						TGAAAGTGACGCATTTATGGA	0.502													19	67					0	0	0	0
NUP93	9688	broad.mit.edu	37	16	56855500	56855500	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:56855500G>T	uc002eka.2	+	7	770	c.649G>T	c.(649-651)GAT>TAT	p.D217Y	NUP93_uc002ekb.2_Missense_Mutation_p.D94Y|NUP93_uc010vhi.1_Missense_Mutation_p.D94Y	NM_014669	NP_055484	Q8N1F7	NUP93_HUMAN	nucleoporin 93kDa	217					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(1)|lung(1)	2						AGAGCTCGATGATAAGGTAGC	0.458													22	68					2.21704e-12	2.59271e-12	1	0
CKLF	51192	broad.mit.edu	37	16	66597056	66597056	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:66597056T>C	uc002eow.2	+	3	416	c.269T>C	c.(268-270)TTC>TCC	p.F90S	CKLF_uc002eox.1_Missense_Mutation_p.F90S|CKLF_uc002eot.2_Intron|CKLF_uc002eou.2_Missense_Mutation_p.F37S|CKLF_uc002eov.2_Intron	NM_016951	NP_058647	Q9UBR5	CKLF_HUMAN	chemokine-like factor isoform a	90	Helical; (Potential).|MARVEL.				cell proliferation|lymphocyte chemotaxis|macrophage chemotaxis|neutrophil chemotaxis|secretion by cell	extracellular space|integral to membrane	chemokine activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0689)|Epithelial(162;0.217)		ACAACAGTATTCATGCTCATC	0.378													23	60					0	0	0	0
ELMO3	79767	broad.mit.edu	37	16	67233226	67233226	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:67233226G>C	uc002esa.2	+	1	199	c.156G>C	c.(154-156)TGG>TGC	p.W52C	ELMO3_uc002esb.2_Missense_Mutation_p.W52C|ELMO3_uc002esc.2_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	Error:Variant_position_missing_in_Q96BJ8_after_alignment					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		GTCCCAGCTGGACCATGGCGC	0.682													9	34					0	0	0	0
MARVELD3	91862	broad.mit.edu	37	16	71668581	71668581	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:71668581A>G	uc002fat.2	+	3	1144	c.1081A>G	c.(1081-1083)ATA>GTA	p.I361V	MARVELD3_uc002fau.2_Intron|MARVELD3_uc010cge.2_Intron	NM_052858	NP_443090	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 2	361	MARVEL.|Helical; (Potential).					integral to membrane				skin(1)	1		Ovarian(137;0.125)				CGGAGCAGATATAGGAGCTGG	0.537													11	45					0	0	0	0
CDYL2	124359	broad.mit.edu	37	16	80654697	80654697	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:80654697G>T	uc002ffs.2	-	4	1075	c.970C>A	c.(970-972)CGG>AGG	p.R324R		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	324						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						TCCTTTCGCCGGTCGCTGGAC	0.522													9	44					0.00621372	0.00631685	1	0
MYBBP1A	10514	broad.mit.edu	37	17	4448119	4448119	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:4448119C>A	uc002fyb.3	-	18	2470	c.2408G>T	c.(2407-2409)CGT>CTT	p.R803L	MYBBP1A_uc002fxz.3_Missense_Mutation_p.R803L|MYBBP1A_uc002fya.3_5'Flank|MYBBP1A_uc010vsa.1_5'Flank	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	803					nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						GGCCTGGATACGCAGCTTCTG	0.657													8	5					0.00448238	0.00457576	1	0
TP53	7157	broad.mit.edu	37	17	7577121	7577121	+	Missense_Mutation	SNP	G	T	T	rs121913343		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:7577121G>T	uc002gim.2	-	8	1011	c.817C>A	c.(817-819)CGT>AGT	p.R273S	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141S|TP53_uc010cng.1_Missense_Mutation_p.R141S|TP53_uc002gii.1_Missense_Mutation_p.R141S|TP53_uc010cnh.1_Missense_Mutation_p.R273S|TP53_uc010cni.1_Missense_Mutation_p.R273S|TP53_uc002gij.2_Missense_Mutation_p.R273S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(467)|p.R273C(396)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.F270fs*72(1)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCACAAACACGCACCTCAAAG	0.542	R273C(SH10TC_STOMACH)|R273C(SUDHL4_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(8MGBA_CENTRAL_NERVOUS_SYSTEM)|R273C(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273C(BL70_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(SW1710_URINARY_TRACT)|R273C(RH30_SOFT_TISSUE)|R273C(PANC0213_PANCREAS)|R273C(SJRH30_SOFT_TISSUE)|R273C(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(RDES_BONE)|R273C(TT2609C02_THYROID)|R273C(MFE319_ENDOMETRIUM)|R273C(RPMI8402_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273C(EFO27_OVARY)|R273C(NCIH1048_LUNG)|R273C(KARPAS299_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			9	14					5.4927e-09	6.0892e-09	1	0
DNAH2	146754	broad.mit.edu	37	17	7663202	7663202	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:7663202C>A	uc002giu.1	+	16	2745	c.2731C>A	c.(2731-2733)CCT>ACT	p.P911T		NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	911	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				CTGCCACCTCCCTGACATTCT	0.537													71	195					1.20873e-29	1.64522e-29	1	0
USP43	124739	broad.mit.edu	37	17	9596531	9596531	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:9596531C>T	uc010cod.2	+	9	1441	c.1441C>T	c.(1441-1443)CAC>TAC	p.H481Y	USP43_uc002gma.3_Missense_Mutation_p.H170Y|USP43_uc010vva.1_Missense_Mutation_p.H481Y|USP43_uc010coe.2_Missense_Mutation_p.H278Y	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	481					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCCCCTCTGTCACTGGGCAGT	0.507													5	10					0	0	0	0
MPRIP	23164	broad.mit.edu	37	17	17030066	17030066	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:17030066G>A	uc002gqu.1	+	4	374	c.318G>A	c.(316-318)GTG>GTA	p.V106V	MPRIP_uc002gqv.1_Silent_p.V106V	NM_201274	NP_958431	Q6WCQ1	MPRIP_HUMAN	myosin phosphatase-Rho interacting protein	106	Interaction with F-actin (By similarity).|PH 1.					cytoplasm|cytoskeleton	actin binding				0						GCACAGATGTGGTGGATGGGG	0.602													19	69					0	0	0	0
Unknown	0	broad.mit.edu	37	17	18343437	18343437	+	RNA	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:18343437G>A	uc010vya.1	+	1		c.216G>A								Homo sapiens cDNA FLJ56791 complete cds, highly similar to Keratin, type I cytoskeletal 16.																		CAGCACCTACGGGGGGGCCTG	0.592													2	1					0	0	0	0
FLOT2	2319	broad.mit.edu	37	17	27211325	27211325	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:27211325A>G	uc002hdc.2	-	3	263	c.140T>C	c.(139-141)CTA>CCA	p.L47P		NM_004475	NP_004466	Q14254	FLOT2_HUMAN	flotillin 2	47					cell adhesion|epidermis development	cell surface|endocytic vesicle|endosome|membrane fraction					0	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;3.26e-06)|all cancers(11;1.76e-05)|BRCA - Breast invasive adenocarcinoma(11;0.00015)|OV - Ovarian serous cystadenocarcinoma(11;0.0602)			CATAATCTCTAGGGAAATCCT	0.602													27	65					0	0	0	0
SLFN11	91607	broad.mit.edu	37	17	33690816	33690816	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:33690816T>A	uc010ctp.2	-	4	453	c.11A>T	c.(10-12)AAT>ATT	p.N4I	SLFN11_uc010ctq.2_Missense_Mutation_p.N4I|SLFN11_uc002hjh.3_Missense_Mutation_p.N4I|SLFN11_uc002hjg.3_Missense_Mutation_p.N4I|SLFN11_uc010ctr.2_Missense_Mutation_p.N4I	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	4						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GGGGCACTGATTTGCCTCCAT	0.343													20	59					0	0	0	0
SYNRG	11276	broad.mit.edu	37	17	35914140	35914140	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:35914140C>T	uc002hoa.2	-	14	1768	c.1685G>A	c.(1684-1686)AGA>AAA	p.R562K	SYNRG_uc010wde.1_Missense_Mutation_p.R484K|SYNRG_uc010wdf.1_Missense_Mutation_p.R484K|SYNRG_uc002hoc.2_Missense_Mutation_p.R483K|SYNRG_uc002hoe.2_Missense_Mutation_p.R484K|SYNRG_uc002hod.2_Missense_Mutation_p.R484K|SYNRG_uc010wdg.1_Missense_Mutation_p.R401K|SYNRG_uc002hob.2_Missense_Mutation_p.R562K|SYNRG_uc002hof.2_Missense_Mutation_p.R274K|SYNRG_uc010cvd.1_Missense_Mutation_p.R362K	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	562	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						TCCTGCAGATCTGAATTCTGC	0.383													18	60					0	0	0	0
STXBP4	252983	broad.mit.edu	37	17	53108627	53108627	+	Splice_Site	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:53108627T>C	uc002iuf.1	+	9	970	c.763_splice	c.e9+2	p.D255_splice	STXBP4_uc010dcc.1_Splice_Site_p.D180_splice|STXBP4_uc010dcd.1_Splice_Site_p.D255_splice	NM_178509	NP_848604	Q6ZWJ1	STXB4_HUMAN	syntaxin binding protein 4							cytoplasm	calcium ion binding			ovary(1)	1						CTTTTGGAGGTAATATTAGGT	0.378													13	20					0	0	0	0
MPO	4353	broad.mit.edu	37	17	56349015	56349015	+	Splice_Site	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:56349015C>T	uc002ivu.1	-	11	2207	c.2030_splice	c.e11+1	p.R677_splice		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase						anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	CCCCTCCTCACCGATCACCAT	0.642													14	41					0	0	0	0
PPM1E	22843	broad.mit.edu	37	17	57058234	57058234	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:57058234C>T	uc002iwx.2	+	7	2237	c.2110C>T	c.(2110-2112)CTG>TTG	p.L704L	PPM1E_uc010ddd.2_Silent_p.L467L	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	713					protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			AGGCACTAGCCTGTCCTCACT	0.433													13	44					0	0	0	0
GDPD1	284161	broad.mit.edu	37	17	57298104	57298104	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:57298104A>G	uc002ixk.1	+	1	271	c.134A>G	c.(133-135)CAC>CGC	p.H45R	GDPD1_uc002ixj.2_Missense_Mutation_p.H45R	NM_182569	NP_872375	Q8N9F7	GDPD1_HUMAN	glycerophosphodiester phosphodiesterase domain	45	Cytoplasmic (Potential).|GDPD.				glycerol metabolic process|lipid metabolic process	cytoplasm|integral to membrane	glycerophosphodiester phosphodiesterase activity|metal ion binding				0	all_neural(34;0.0837)|Medulloblastoma(34;0.0922)					CACATCTCTCACCGCGGAGGT	0.572											OREG0024617	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	76					0	0	0	0
GH2	2689	broad.mit.edu	37	17	61957807	61957807	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:61957807C>T	uc002jco.1	-	5	590	c.528G>A	c.(526-528)TCG>TCA	p.S176S	GH2_uc002jcj.2_Intron|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_3'UTR|GH2_uc002jcm.1_Missense_Mutation_p.R175H|GH2_uc002jcn.1_Silent_p.S161S	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	176						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						CATCGTTGTGCGATTTTGTGT	0.542													30	133					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625132	74625132	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:74625132C>T	uc002jsh.2	-	2	967	c.793G>A	c.(793-795)GAG>AAG	p.E265K	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.E133K|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	265	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TATTTTTCCTCAAAATCCCAC	0.567													34	92					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625172	74625172	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:74625172C>T	uc002jsh.2	-	2	927	c.753G>A	c.(751-753)CTG>CTA	p.L251L	ST6GALNAC1_uc002jsi.2_Silent_p.L119L|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	251	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGGCGGCCTTCAGTCTTTGGT	0.547													23	66					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625281	74625281	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:74625281C>G	uc002jsh.2	-	2	818	c.644G>C	c.(643-645)AGA>ACA	p.R215T	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.R83T|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	215	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TCCTTTCTGTCTCGTCCTTGT	0.577													18	86					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625381	74625381	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:74625381C>G	uc002jsh.2	-	2	718	c.544G>C	c.(544-546)GAG>CAG	p.E182Q	ST6GALNAC1_uc002jsi.2_Missense_Mutation_p.E50Q|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	182	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGGTGCTTCTCTGACACCGTC	0.577													43	157					0	0	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74625490	74625490	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:74625490C>G	uc002jsh.2	-	2	609	c.435G>C	c.(433-435)GGG>GGC	p.G145G	ST6GALNAC1_uc002jsi.2_Silent_p.G13G|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	145	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						CAGAGGCCATCCCTGCATCTT	0.572													30	126					0	0	0	0
TNRC6C	57690	broad.mit.edu	37	17	76082941	76082941	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:76082941G>A	uc002jud.2	+	14	4169	c.3569G>A	c.(3568-3570)CGC>CAC	p.R1190H	TNRC6C_uc002juf.2_Missense_Mutation_p.R1187H	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	1190	Potential.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CAGGTTGCGCGCACAATCACT	0.592													52	241					0	0	0	0
CYTH1	9267	broad.mit.edu	37	17	76694411	76694411	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:76694411C>A	uc002jvw.2	-	9	822	c.751G>T	c.(751-753)GGG>TGG	p.G251W	CYTH1_uc010wtw.1_Missense_Mutation_p.G192W|CYTH1_uc010wtx.1_Missense_Mutation_p.G192W	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	251					regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						AGGTCATTCCCGTCGTCTTCT	0.413													50	176					5.47352e-35	7.6411e-35	1	0
CCDC40	55036	broad.mit.edu	37	17	78013758	78013758	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:78013758G>A	uc010dht.2	+	3	268	c.241G>A	c.(241-243)GAG>AAG	p.E81K	CCDC40_uc010wub.1_Missense_Mutation_p.E81K	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	81					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			ggaaggggaagaggaggCTGT	0.353													14	56					0	0	0	0
CD7	924	broad.mit.edu	37	17	80275332	80275332	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:80275332G>C	uc002kel.1	-	1	149	c.40C>G	c.(40-42)CTG>GTG	p.L14V	CD7_uc010din.2_Missense_Mutation_p.L14V|CD7_uc002kem.2_5'UTR|CD7_uc010wvk.1_Missense_Mutation_p.L14V	NM_006137	NP_006128	P09564	CD7_HUMAN	CD7 antigen precursor	14					immune response|T cell activation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|membrane fraction|plasma membrane	receptor activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00463)|BRCA - Breast invasive adenocarcinoma(99;0.0667)			GCCAGCGCCAGAAGCAGGGGC	0.692													4	11					0	0	0	0
RALBP1	10928	broad.mit.edu	37	18	9517250	9517250	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:9517250G>T	uc002kob.2	+	3	875	c.652G>T	c.(652-654)GAT>TAT	p.D218Y	RALBP1_uc002koc.2_Missense_Mutation_p.D218Y	NM_006788	NP_006779	Q15311	RBP1_HUMAN	ralA binding protein 1	218	Rho-GAP.				chemotaxis|positive regulation of Cdc42 GTPase activity|small GTPase mediated signal transduction|transport	cytosol|membrane	ATPase activity, coupled to movement of substances|Rac GTPase activator activity|Rac GTPase binding|Ral GTPase binding			central_nervous_system(1)	1						TGAATGTATAGATTACGTAGA	0.413													17	34					6.33239e-15	7.69943e-15	1	0
ABHD3	171586	broad.mit.edu	37	18	19244105	19244105	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:19244105G>A	uc002ktl.2	-	5	782	c.642C>T	c.(640-642)TTC>TTT	p.F214F	ABHD3_uc002ktm.2_Intron|ABHD3_uc010xao.1_RNA|ABHD3_uc002ktk.2_5'UTR	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	214						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						CTGCTGCCAGGAAAGGAGCAG	0.448													10	24					0	0	0	0
ABHD3	171586	broad.mit.edu	37	18	19244115	19244115	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:19244115G>A	uc002ktl.2	-	5	772	c.632C>T	c.(631-633)TCT>TTT	p.S211F	ABHD3_uc002ktm.2_Intron|ABHD3_uc010xao.1_RNA|ABHD3_uc002ktk.2_5'UTR	NM_138340	NP_612213	Q8WU67	ABHD3_HUMAN	alpha/beta hydrolase domain containing protein	211						integral to membrane	carboxylesterase activity			central_nervous_system(1)	1						GAAAGGAGCAGAAGGGTACAG	0.443													11	27					0	0	0	0
MIB1	57534	broad.mit.edu	37	18	19427048	19427048	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:19427048C>T	uc002ktq.2	+	16	2355	c.2355C>T	c.(2353-2355)CTC>CTT	p.L785L	MIB1_uc002ktp.2_Silent_p.L424L	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	785					Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			ATCCGAATCTCTGCAAAGCAC	0.393													19	62					0	0	0	0
NOL4	8715	broad.mit.edu	37	18	31684009	31684009	+	Splice_Site	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:31684009A>G	uc010dmi.2	-	4	868	c.639_splice	c.e4+1	p.E213_splice	NOL4_uc002kxr.3_Splice_Site_p.E49_splice|NOL4_uc010xbt.1_Splice_Site_p.E139_splice|NOL4_uc010dmh.2_Splice_Site_p.E139_splice|NOL4_uc010xbu.1_Splice_Site_p.E213_splice|NOL4_uc002kxt.3_Splice_Site_p.E213_splice|NOL4_uc010xbw.1_Splice_Site_p.E99_splice	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4							nucleolus	RNA binding			ovary(3)	3						TTTTTATTTTACCTCATCTTG	0.373													20	39					0	0	0	0
INO80C	125476	broad.mit.edu	37	18	33077733	33077733	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:33077733C>T	uc002kyy.3	-	1	223	c.106G>A	c.(106-108)GGC>AGC	p.G36S	INO80C_uc002kyw.1_Missense_Mutation_p.G36S|INO80C_uc002kyx.3_5'Flank|INO80C_uc010dmt.2_Missense_Mutation_p.G36S	NM_194281	NP_919257	Q6PI98	IN80C_HUMAN	Ies6-similar protein isoform 2	36					DNA recombination|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Ino80 complex|MLL1 complex					0						GCGCCATAGCCCCCGCCGCTG	0.622													5	12					0	0	0	0
GALNT1	2589	broad.mit.edu	37	18	33271142	33271142	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:33271142A>G	uc010dmu.2	+	8	1198	c.1145A>G	c.(1144-1146)TAT>TGT	p.Y382C	GALNT1_uc002kyz.3_Missense_Mutation_p.Y322C|GALNT1_uc002kzb.2_Missense_Mutation_p.Y382C	NM_020474	NP_065207	Q10472	GALT1_HUMAN	polypeptide N-acetylgalactosaminyltransferase 1	382	Lumenal (Potential).				protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2						AATTTCTTCTATATAATTTCT	0.403													15	50					0	0	0	0
KCNG2	26251	broad.mit.edu	37	18	77659643	77659643	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr18:77659643C>T	uc010xfl.1	+	2	1228	c.1228C>T	c.(1228-1230)CGC>TGC	p.R410C		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	410	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CACCTTTTCGCGCTCCTACTC	0.697													11	34					0	0	0	0
ABCA7	10347	broad.mit.edu	37	19	1062258	1062258	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:1062258G>A	uc002lqw.3	+	42	5889	c.5658G>A	c.(5656-5658)GAG>GAA	p.E1886E	ABCA7_uc002lqy.2_Silent_p.E339E|ABCA7_uc010dsc.2_RNA	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	1886	ABC transporter 2.				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGGGCCGCGAGCACCTGGAGC	0.692													79	164					0	0	0	0
SIRT6	51548	broad.mit.edu	37	19	4174811	4174811	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:4174811G>A	uc002lzo.2	-	8	931	c.871C>T	c.(871-873)CGC>TGC	p.R291C	SIRT6_uc002lzn.2_3'UTR|SIRT6_uc002lzp.2_3'UTR|SIRT6_uc010xid.1_Missense_Mutation_p.R219C|SIRT6_uc002lzq.2_Missense_Mutation_p.R264C|SIRT6_uc002lzr.2_Missense_Mutation_p.R192C	NM_016539	NP_057623	Q8N6T7	SIRT6_HUMAN	sirtuin 6	291	Pro-rich.				chromatin silencing|protein ADP-ribosylation	nuclear telomeric heterochromatin|nucleoplasm	NAD(P)+-protein-arginine ADP-ribosyltransferase activity|NAD+ ADP-ribosyltransferase activity|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|protein binding|zinc ion binding			skin(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.023)|STAD - Stomach adenocarcinoma(1328;0.18)		GTGGGCGGGCGGGGCAGGGGT	0.706													11	15					0	0	0	0
SHD	56961	broad.mit.edu	37	19	4280258	4280258	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:4280258C>A	uc002lzw.2	+	1	1661	c.198C>A	c.(196-198)CCC>CCA	p.P66P	SHD_uc010dtu.2_Silent_p.P66P	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	66											0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		CCAAGAACCCCGGAGATGCCA	0.672													6	18					3.59834e-05	3.78366e-05	1	0
MUC16	94025	broad.mit.edu	37	19	9075421	9075421	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:9075421G>A	uc002mkp.2	-	3	12229	c.12025C>T	c.(12025-12027)CCT>TCT	p.P4009S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4011	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AAGGAATTAGGCTCTGTTCTA	0.473													16	74					0	0	0	0
COL5A3	50509	broad.mit.edu	37	19	10071183	10071183	+	Silent	SNP	C	T	T	rs144662581		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:10071183C>T	uc002mmq.1	-	67	5228	c.5142G>A	c.(5140-5142)GCG>GCA	p.A1714A		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1714	Fibrillar collagen NC1.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			GCAGAAATCCCGCTCGAGAAG	0.567													36	140					0	0	0	0
CARM1	10498	broad.mit.edu	37	19	11031564	11031564	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:11031564G>C	uc002mpz.2	+	13	1605	c.1479G>C	c.(1477-1479)TCG>TCC	p.S493S	CARM1_uc010dxn.2_RNA|CARM1_uc002mqa.2_Silent_p.S276S	NM_199141	NP_954592	Q86X55	CARM1_HUMAN	coactivator-associated arginine	493					cellular lipid metabolic process|histone H3-R2 methylation|interspecies interaction between organisms|pathogenesis|positive regulation of fat cell differentiation|regulation of estrogen receptor signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleoplasm	beta-catenin binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-R17 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein-arginine omega-N asymmetric methyltransferase activity|transcription regulatory region DNA binding				0						CATCTCCCTCGGAAAACATGT	0.657													66	144					0	0	0	0
ZNF700	90592	broad.mit.edu	37	19	12059494	12059494	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:12059494G>T	uc002msu.2	+	4	781	c.655G>T	c.(655-657)GAT>TAT	p.D219Y	ZNF700_uc010xme.1_Missense_Mutation_p.D237Y|ZNF763_uc010xmf.1_Intron	NM_144566	NP_653167	Q9H0M5	ZN700_HUMAN	zinc finger protein 700	219					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCACAGTGGGGATGGAACTTA	0.378													33	68					1.2782e-34	1.77931e-34	1	0
ZNF564	163050	broad.mit.edu	37	19	12637604	12637604	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:12637604T>C	uc002mty.2	-	4	1528	c.1318A>G	c.(1318-1320)ATG>GTG	p.M440V	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	440	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TGCAGTATCATATGTTTTCTA	0.393													98	149					0	0	0	0
ZNF564	163050	broad.mit.edu	37	19	12638134	12638134	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:12638134T>A	uc002mty.2	-	4	998	c.788A>T	c.(787-789)GAC>GTC	p.D263V	ZNF709_uc002mtx.3_Intron	NM_144976	NP_659413	Q8TBZ8	ZN564_HUMAN	zinc finger protein 564	263	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ACTGGGGCGGTCAAAGGCTTT	0.393													42	50					0	0	0	0
NOTCH3	4854	broad.mit.edu	37	19	15295165	15295165	+	Missense_Mutation	SNP	G	T	T	rs34338511	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:15295165G>T	uc002nan.2	-	16	2583	c.2507C>A	c.(2506-2508)ACC>AAC	p.T836N	NOTCH3_uc002nao.1_Intron	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	836	Extracellular (Potential).|EGF-like 21; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			TCCATGGCAGGTGCAGCTGAA	0.627													22	106					6.36457e-07	6.83913e-07	1	0
ZNF99	7652	broad.mit.edu	37	19	22952081	22952081	+	Nonsense_Mutation	SNP	C	A	A	rs149345966	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:22952081C>A	uc010xrh.1	-	2	112	c.112G>T	c.(112-114)GAG>TAG	p.E38*		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CATTGCCACTCCTCCAGAGCG	0.403													40	46					2.26627e-22	2.97714e-22	1	0
TIMM50	92609	broad.mit.edu	37	19	39976330	39976330	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:39976330G>T	uc002olu.1	+	6	817	c.684G>T	c.(682-684)ATG>ATT	p.M228I	TIMM50_uc002olt.1_RNA|TIMM50_uc002olv.1_5'UTR	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	125	Mitochondrial intermembrane (Potential).				mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TCCCACAGATGATCATCGAGC	0.607													36	91					2.2871e-25	3.04532e-25	1	0
CEACAM3	1084	broad.mit.edu	37	19	42301849	42301849	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:42301849T>A	uc002orn.1	+	2	469	c.393T>A	c.(391-393)AAT>AAA	p.N131K	CEACAM3_uc010eia.1_Missense_Mutation_p.N131K|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	131	Ig-like V-type.|Extracellular (Potential).					integral to membrane				skin(1)	1						ATCTTGTGAATGAAGAAGCAA	0.453													62	242					0	0	0	0
TMEM145	284339	broad.mit.edu	37	19	42824523	42824523	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:42824523G>T	uc002otk.1	+	13	1180	c.1128G>T	c.(1126-1128)TGG>TGT	p.W376C		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	376						integral to membrane					0		Prostate(69;0.00682)				TCCCCAAGTGGGCCCGGGAGA	0.577													27	122					6.32553e-13	7.45075e-13	1	0
ZNF221	7638	broad.mit.edu	37	19	44470148	44470148	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:44470148T>C	uc002oxx.2	+	6	822	c.494T>C	c.(493-495)GTG>GCG	p.V165A	ZNF221_uc010ejb.1_Missense_Mutation_p.V165A|ZNF221_uc010xws.1_Missense_Mutation_p.V165A	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	165					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				ATAAGTCACGTGCAACAGAAA	0.418													29	87					0	0	0	0
ZNF233	353355	broad.mit.edu	37	19	44777835	44777835	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:44777835T>A	uc002oyz.1	+	5	1149	c.1022T>A	c.(1021-1023)CTC>CAC	p.L341H	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Missense_Mutation_p.L156H	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	341					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				GGAGAGAACCTCTACAGATGT	0.512													10	20					0	0	0	0
BCL2L12	83596	broad.mit.edu	37	19	50172114	50172114	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:50172114C>T	uc002ppa.2	+	4	1191	c.509C>T	c.(508-510)GCT>GTT	p.A170V	IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'Flank|IRF3_uc002pov.2_5'Flank|IRF3_uc002pow.2_5'Flank|IRF3_uc002poz.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.A169V	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	170					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CCAGGCCCAGCTACTCCAGAC	0.557													49	179					0	0	0	0
NLRP12	91662	broad.mit.edu	37	19	54314433	54314433	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:54314433G>T	uc002qch.3	-	3	700	c.480C>A	c.(478-480)CTC>CTA	p.L160L	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Silent_p.L160L|NLRP12_uc002qcj.3_Silent_p.L160L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Silent_p.L160L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	160					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		TCACCAGCAGGAGCCGGGTGT	0.617													39	115					8.16904e-11	9.30891e-11	1	0
LILRB3	11025	broad.mit.edu	37	19	54725882	54725882	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:54725882C>T	uc002qef.1	-	4	587	c.476G>A	c.(475-477)GGA>GAA	p.G159E	LILRB3_uc002qee.1_Missense_Mutation_p.G159E|LILRB3_uc002qeh.1_Missense_Mutation_p.G159E|LILRB3_uc002qeg.1_RNA|LILRB3_uc002qei.1_Intron|LILRA6_uc002qek.1_Intron|LILRB3_uc010erh.1_Missense_Mutation_p.G159E|LILRB3_uc002qej.1_Intron|LILRA6_uc002qel.1_Intron|LILRA6_uc002qem.1_Intron|LILRB3_uc002qen.1_Intron|LILRB3_uc002qeo.1_Intron|LILRB3_uc002qep.1_Missense_Mutation_p.G159E|LILRB3_uc002qeq.1_Intron|LILRB3_uc002qer.1_Intron|LILRB3_uc002qes.1_Intron|LILRA6_uc010yep.1_Intron|LILRA6_uc010yeq.1_Intron	NM_006864	NP_006855	O75022	LIRB3_HUMAN	leukocyte immunoglobulin-like receptor,	159	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane	transmembrane receptor activity			skin(2)|ovary(1)	3	all_cancers(19;0.00723)|all_epithelial(19;0.00389)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CTGGTGTTCTCCTTCCTTCAT	0.627													15	7					0	0	0	0
KIR2DS4	3809	broad.mit.edu	37	19	55351035	55351035	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:55351035A>T	uc002qhm.1	+	5	591	c.545A>T	c.(544-546)CAG>CTG	p.Q182L	KIR2DS4_uc010yfj.1_Missense_Mutation_p.R168W|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Missense_Mutation_p.R175W|KIR2DS4_uc002qhn.1_Intron	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	182	Extracellular (Potential).|Ig-like C2-type 2.					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		GGAACATTCCAGGCCGACTTT	0.587													39	85					0	0	0	0
NLRP7	199713	broad.mit.edu	37	19	55451293	55451293	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:55451293C>G	uc002qih.3	-	4	970	c.894G>C	c.(892-894)CTG>CTC	p.L298L	NLRP7_uc002qig.3_Silent_p.L298L|NLRP7_uc002qii.3_Silent_p.L298L|NLRP7_uc010esk.2_Silent_p.L298L|NLRP7_uc010esl.2_Silent_p.L326L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	298	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GCGTGGTGACCAGCAAGGCTG	0.637													10	28					0	0	0	0
ZNF667	63934	broad.mit.edu	37	19	56953709	56953709	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:56953709T>C	uc002qnd.2	-	5	817	c.655A>G	c.(655-657)ATG>GTG	p.M219V	ZNF667_uc010etl.2_Missense_Mutation_p.M1V|ZNF667_uc002qne.2_Missense_Mutation_p.M219V|ZNF667_uc010etm.2_Missense_Mutation_p.M162V	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	219	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		TGAATTCTCATATGTAGAATA	0.368													37	68					0	0	0	0
ZNF773	374928	broad.mit.edu	37	19	58018684	58018684	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:58018684G>T	uc002qox.2	+	4	1361	c.1221G>T	c.(1219-1221)AGG>AGT	p.R407S	ZNF547_uc002qpm.3_Intron|ZNF773_uc002qoy.2_Missense_Mutation_p.R406S|ZNF773_uc002qoz.2_Intron	NM_198542	NP_940944	Q6PK81	ZN773_HUMAN	zinc finger protein 773	407	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0254)		AACATCAGAGGGTTCACACTG	0.418													24	58					2.79863e-10	3.14525e-10	1	0
ZNF135	7694	broad.mit.edu	37	19	58578254	58578254	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:58578254A>T	uc010yhq.1	+	5	534	c.438A>T	c.(436-438)GAA>GAT	p.E146D	ZNF135_uc002qre.2_Missense_Mutation_p.E134D|ZNF135_uc002qrd.1_Missense_Mutation_p.E92D|ZNF135_uc002qrf.2_Missense_Mutation_p.E92D|ZNF135_uc002qrg.2_Missense_Mutation_p.E104D|ZNF135_uc010yhr.1_5'UTR	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	146					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		GCCACTGGGAATGGAGTTGTG	0.542													20	36					0	0	0	0
MZF1	7593	broad.mit.edu	37	19	59081858	59081858	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:59081858C>T	uc002qto.2	-	3	994	c.433G>A	c.(433-435)GAG>AAG	p.E145K	LOC100131691_uc002qtm.2_Intron|MZF1_uc002qtn.2_Missense_Mutation_p.E145K|MZF1_uc010euu.1_Missense_Mutation_p.E186K	NM_198055	NP_932172	P28698	MZF1_HUMAN	zinc finger protein 42 isoform 2	145					viral reproduction	nucleus	protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0443)|all cancers(4;7.92e-14)|Epithelial(4;5.57e-11)|OV - Ovarian serous cystadenocarcinoma(4;1.13e-09)|GBM - Glioblastoma multiforme(193;0.0108)|Lung(386;0.182)		TCCATCTTCTCTGATAGGACC	0.597													7	25					0	0	0	0
FAM110C	642273	broad.mit.edu	37	2	46008	46008	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:46008G>C	uc010yim.1	-	1	378	c.378C>G	c.(376-378)CTC>CTG	p.L126L		NM_001077710	NP_001071178	Q1W6H9	F110C_HUMAN	hypothetical protein LOC642273	126						microtubule|microtubule organizing center|spindle pole					0	all_hematologic(175;0.0429)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.00221)		all cancers(51;0.000815)|Epithelial(75;0.00379)|OV - Ovarian serous cystadenocarcinoma(76;0.0127)|GBM - Glioblastoma multiforme(21;0.232)		GCCCCTGGAAGAGCTTCTTCA	0.687													8	35					0	0	0	0
KIDINS220	57498	broad.mit.edu	37	2	8874867	8874867	+	Missense_Mutation	SNP	C	G	G	rs61742970		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:8874867C>G	uc002qzc.2	-	28	3916	c.3734G>C	c.(3733-3735)CGT>CCT	p.R1245P	KIDINS220_uc010yiv.1_Missense_Mutation_p.R954P|KIDINS220_uc002qzd.2_Missense_Mutation_p.R1146P|KIDINS220_uc010yiw.1_Missense_Mutation_p.R1189P|KIDINS220_uc002qzb.2_Missense_Mutation_p.R99P	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	1245	Cytoplasmic (Potential).				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					AGCTAACACACGGCCATTTAT	0.333													12	45					0	0	0	0
SMC6	79677	broad.mit.edu	37	2	17896314	17896314	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:17896314C>A	uc002rco.2	-	16	1840	c.1544G>T	c.(1543-1545)CGG>CTG	p.R515L	SMC6_uc010exo.2_Missense_Mutation_p.R515L|SMC6_uc002rcn.2_Missense_Mutation_p.R515L|SMC6_uc002rcp.1_Missense_Mutation_p.R541L|SMC6_uc002rcq.2_Missense_Mutation_p.R541L	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	515	Flexible hinge.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					TTCTGGGTCCCGAAGATGAAT	0.388													21	60					1.9806e-07	2.14711e-07	1	0
APOB	338	broad.mit.edu	37	2	21232560	21232560	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:21232560C>A	uc002red.2	-	26	7308	c.7180G>T	c.(7180-7182)GTT>TTT	p.V2394F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	2394					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATAAATCCAACCAATTTCTCA	0.308													9	22					3.09899e-07	3.3521e-07	1	0
APOB	338	broad.mit.edu	37	2	21250809	21250809	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:21250809G>A	uc002red.2	-	14	2086	c.1958C>T	c.(1957-1959)GCC>GTC	p.A653V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	653	Vitellogenin.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCTATTTTGGCTGAGGCTGG	0.398													34	96					0	0	0	0
BRE	9577	broad.mit.edu	37	2	28521258	28521258	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:28521258G>T	uc002rlr.2	+	12	1306	c.988G>T	c.(988-990)GTT>TTT	p.V330F	BRE_uc002rlp.1_Missense_Mutation_p.V330F|BRE_uc002rlq.2_Missense_Mutation_p.V330F|BRE_uc002rls.2_Missense_Mutation_p.V330F|BRE_uc002rlt.2_Missense_Mutation_p.V330F|BRE_uc002rlu.2_Missense_Mutation_p.V330F|BRE_uc002rlv.2_Missense_Mutation_p.V192F|BRE_uc002rlx.2_RNA	NM_199194	NP_954664	Q9NXR7	BRE_HUMAN	brain and reproductive organ-expressed (TNFRSF1A	330	UEV-like 2.				apoptosis|chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of anti-apoptosis|positive regulation of DNA repair|response to ionizing radiation|signal transduction	BRCA1-A complex|BRISC complex|cytoplasm|nuclear ubiquitin ligase complex	peroxisome targeting sequence binding|polyubiquitin binding|tumor necrosis factor receptor binding			lung(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					ATTTCAGTCCGTTTATCACTT	0.433													69	202					3.41413e-29	4.63414e-29	1	0
SIX3	6496	broad.mit.edu	37	2	45170030	45170030	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:45170030G>A	uc002run.1	+	1	994	c.787G>A	c.(787-789)GCC>ACC	p.A263T		NM_005413	NP_005404	O95343	SIX3_HUMAN	SIX homeobox 3	263	Homeobox.|Poly-Ala.				visual perception	nucleus					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)				GCGCGACCGCGCCGCGGCGGC	0.677													8	19					0	0	0	0
SOCS5	9655	broad.mit.edu	37	2	46986867	46986867	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:46986867G>A	uc002rvf.2	+	2	1362	c.1198G>A	c.(1198-1200)GAA>AAA	p.E400K	SOCS5_uc010yoe.1_Missense_Mutation_p.E369K|SOCS5_uc002rvg.2_Missense_Mutation_p.E400K	NM_014011	NP_054730	O75159	SOCS5_HUMAN	suppressor of cytokine signaling 5	400	SH2.				cell growth|cytokine-mediated signaling pathway|intracellular signal transduction|negative regulation of signal transduction|negative regulation of T-helper 2 cell differentiation|positive regulation of T-helper 1 cell differentiation|regulation of growth					ovary(1)|lung(1)|central_nervous_system(1)	3		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			AGGGAAACCTGAAGGCACGTT	0.527													20	35					0	0	0	0
FBXO11	80204	broad.mit.edu	37	2	48066599	48066599	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:48066599G>A	uc010fbl.2	-	3	263	c.149C>T	c.(148-150)GCA>GTA	p.A50V	FBXO11_uc002rwe.2_Missense_Mutation_p.A50V|FBXO11_uc002rwf.2_Missense_Mutation_p.A50V|FBXO11_uc002rwg.1_Missense_Mutation_p.A50V	NM_025133	NP_079409	Q86XK2	FBX11_HUMAN	F-box only protein 11 isoform 1	134					ubiquitin-dependent protein catabolic process	cytoplasm|nucleolus|ubiquitin ligase complex	protein binding|protein-arginine N-methyltransferase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)	2		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TGCACGTTTTGCACGATGACC	0.328													12	47					0	0	0	0
FANCL	55120	broad.mit.edu	37	2	58425730	58425730	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:58425730T>A	uc002rzw.3	-	7	606	c.539A>T	c.(538-540)CAG>CTG	p.Q180L	FANCL_uc002rzx.3_Missense_Mutation_p.Q180L|FANCL_uc010fce.2_Missense_Mutation_p.Q180L|FANCL_uc010fcf.1_Missense_Mutation_p.Q121L	NM_018062	NP_060532	Q9NW38	FANCL_HUMAN	Fanconi anemia, complementation group L isoform	180					DNA repair	cytoplasm|nucleoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						AGAATTTACCTGAGGTGTCCA	0.244								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				15	45					0	0	0	0
MRPL19	9801	broad.mit.edu	37	2	75882378	75882378	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:75882378A>G	uc002snl.2	+	6	871	c.846A>G	c.(844-846)ATA>ATG	p.I282M	MRPL19_uc002snm.1_Missense_Mutation_p.I282M	NM_014763	NP_055578	P49406	RM19_HUMAN	mitochondrial ribosomal protein L19 precursor	282					translation	mitochondrion|nuclear membrane|ribosome	structural constituent of ribosome				0						AAGCTGCAATATGGAAGGAAA	0.363													22	53					0	0	0	0
ZNF514	84874	broad.mit.edu	37	2	95818878	95818878	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:95818878C>A	uc002sue.1	-	3	495	c.121G>T	c.(121-123)GGC>TGC	p.G41C	ZNF514_uc002sud.1_Missense_Mutation_p.G114C	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	41	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTGTGCTCACCCAGAATGGCC	0.547													21	71					1.66031e-10	1.88322e-10	1	0
ASTL	431705	broad.mit.edu	37	2	96803335	96803335	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:96803335C>T	uc010yui.1	-	2	160	c.160G>A	c.(160-162)GAC>AAC	p.D54N		NM_001002036	NP_001002036	Q6HA08	ASTL_HUMAN	astacin-like metalloendopeptidase precursor	54					proteolysis		metalloendopeptidase activity|zinc ion binding				0						GCAGGAATGTCCTTGTCCCCG	0.587													54	128					0	0	0	0
FBLN7	129804	broad.mit.edu	37	2	112933379	112933379	+	Silent	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:112933379A>G	uc002tho.1	+	4	766	c.495A>G	c.(493-495)GGA>GGG	p.G165G	FBLN7_uc002thn.2_Silent_p.G165G|FBLN7_uc010fki.1_Silent_p.G165G|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	165	EGF-like 1; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GTCCTCCAGGAAGGACTGGGA	0.527													29	82					0	0	0	0
RGPD5	84220	broad.mit.edu	37	2	113147642	113147642	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:113147642C>G	uc002ths.1	-	20	2957	c.2880G>C	c.(2878-2880)GTG>GTC	p.V960V	RGPD8_uc010fkk.1_Silent_p.V820V|RGPD5_uc002tht.1_Silent_p.V211V	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	960					intracellular transport	cytoplasm	binding				0						GGCCAAAAATCACACCACGGC	0.423													45	162					0	0	0	0
POTEF	728378	broad.mit.edu	37	2	130832532	130832532	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:130832532G>T	uc010fmh.2	-	17	2913	c.2513C>A	c.(2512-2514)GCT>GAT	p.A838D		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	838	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						GGACAGCACAGCCTGGATGGC	0.587													40	217					5.57489e-27	7.50466e-27	1	0
ZEB2	9839	broad.mit.edu	37	2	145161496	145161496	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:145161496G>T	uc002tvu.2	-	6	1274	c.794C>A	c.(793-795)CCA>CAA	p.P265Q	ZEB2_uc002tvv.2_Missense_Mutation_p.P259Q|ZEB2_uc010zbm.1_Missense_Mutation_p.P236Q|ZEB2_uc010fnp.2_Missense_Mutation_p.P173Q|ZEB2_uc010fnq.1_Missense_Mutation_p.P294Q	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	265						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATCTGTCCCTGGCTTGTGTGT	0.393													44	149					1.23713e-20	1.59106e-20	1	0
GALNT5	11227	broad.mit.edu	37	2	158114943	158114943	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:158114943G>A	uc002tzg.2	+	1	604	c.349G>A	c.(349-351)GCC>ACC	p.A117T	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	117	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						AATGCAGAATGCCCTGGGAAG	0.532													26	98					0	0	0	0
GCA	25801	broad.mit.edu	37	2	163216037	163216037	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:163216037G>T	uc002ucg.2	+	7	778	c.602G>T	c.(601-603)GGG>GTG	p.G201V	GCA_uc010zcu.1_Missense_Mutation_p.G182V	NM_012198	NP_036330	P28676	GRAN_HUMAN	grancalcin, EF-hand calcium binding protein	201					cellular membrane fusion	cytoplasm|plasma membrane	calcium ion binding|protein homodimerization activity				0						TTGCAACAAGGGTCTGCGAAT	0.294													13	35					0.000566183	0.000582836	1	0
SCN7A	6332	broad.mit.edu	37	2	167273291	167273291	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:167273291C>T	uc002udu.1	-	20	3467	c.3340G>A	c.(3340-3342)GAA>AAA	p.E1114K	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	1114					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						AGCATGGATTCGTTAAACAGA	0.378													7	23					0	0	0	0
HOXD12	3238	broad.mit.edu	37	2	176965471	176965471	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:176965471G>A	uc010zev.1	+	2	796	c.796G>A	c.(796-798)GCG>ACG	p.A266T	HOXD12_uc010zew.1_3'UTR	NM_021193	NP_067016	P35452	HXD12_HUMAN	homeobox D12	266						nuclear chromosome	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0521)|READ - Rectum adenocarcinoma(9;0.0678)		TCGGGAGCAGGCGCTGGCGCT	0.592													6	15					0	0	0	0
HOXD10	3236	broad.mit.edu	37	2	176981711	176981711	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:176981711C>A	uc002ukj.2	+	1	220	c.150C>A	c.(148-150)ACC>ACA	p.T50T		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	50						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GAATGCAAACCTGTGGACTGC	0.493													27	78					1.74807e-11	2.01542e-11	1	0
HOXD1	3231	broad.mit.edu	37	2	177054082	177054082	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:177054082C>A	uc002ukv.3	+	1	776	c.553C>A	c.(553-555)CCA>ACA	p.P185T	HOXD1_uc010fqy.2_Missense_Mutation_p.P185T|HOXD1_uc010zez.1_Missense_Mutation_p.P185T	NM_024501	NP_078777	Q9GZZ0	HXD1_HUMAN	homeobox D1	185						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.0226)		ATCCCCGGCCCCAGGCACCTA	0.637													7	18					5.4927e-09	6.0892e-09	1	0
PDE11A	50940	broad.mit.edu	37	2	178936874	178936874	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:178936874G>T	uc002ulq.2	-	1	609	c.291C>A	c.(289-291)CCC>CCA	p.P97P	PDE11A_uc002ulr.2_Intron|PDE11A_uc002ult.1_Intron	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	97					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			TGGGACTCAAGGGAACCCCAC	0.647									Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				22	39					5.35356e-11	6.11479e-11	1	0
TTN	7273	broad.mit.edu	37	2	179466434	179466434	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179466434G>A	uc010zfg.1	-	235	47903	c.47679C>T	c.(47677-47679)GCC>GCT	p.A15893A	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.A9588A|TTN_uc010zfi.1_Silent_p.A9521A|TTN_uc010zfj.1_Silent_p.A9396A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16820							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTATTCTTGGCTGTGATGC	0.353													24	47					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179489296	179489296	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179489296C>G	uc010zfg.1	-	191	37231	c.37007G>C	c.(37006-37008)GGC>GCC	p.G12336A	TTN_uc010zfh.1_Missense_Mutation_p.G6031A|TTN_uc010zfi.1_Missense_Mutation_p.G5964A|TTN_uc010zfj.1_Missense_Mutation_p.G5839A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13263							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTGACCCTGCCATCAGCAAC	0.393													11	55					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179584473	179584473	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179584473G>C	uc010zfg.1	-	79	20238	c.20014C>G	c.(20014-20016)CCA>GCA	p.P6672A	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.P3333A	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7599							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGAGTTCTGGTGTTCCAGTC	0.418													13	60					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179597007	179597007	+	Silent	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179597007T>A	uc010zfg.1	-	54	13181	c.12957A>T	c.(12955-12957)CTA>CTT	p.L4319L	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.L980L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5246							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGCAGGCTAGCTGGGTGG	0.408													30	88					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179598042	179598042	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179598042G>A	uc010zfg.1	-	51	12470	c.12246C>T	c.(12244-12246)CAC>CAT	p.H4082H	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.H743H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5009							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCCACTGTCGTGCAGCTCAG	0.398													19	90					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179599474	179599474	+	Missense_Mutation	SNP	G	T	T	rs74607159	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179599474G>T	uc010zfg.1	-	48	11669	c.11445C>A	c.(11443-11445)GAC>GAA	p.D3815E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D476E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4742							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CACTGCCGACGTCATTCACTG	0.368													49	137					1.4709e-25	1.96387e-25	1	0
TTN	7273	broad.mit.edu	37	2	179638712	179638712	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179638712C>A	uc010zfg.1	-	31	7407	c.7183G>T	c.(7183-7185)GTG>TTG	p.V2395L	TTN_uc010zfh.1_Missense_Mutation_p.V2349L|TTN_uc010zfi.1_Missense_Mutation_p.V2349L|TTN_uc010zfj.1_Missense_Mutation_p.V2349L|TTN_uc002unb.2_Missense_Mutation_p.V2395L|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2395							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGGCTGCACTTCTTGGCCG	0.438													29	94					1.06801e-11	1.23718e-11	1	0
ITGA4	3676	broad.mit.edu	37	2	182392025	182392025	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:182392025T>A	uc002unu.2	+	22	3104	c.2341T>A	c.(2341-2343)TTT>ATT	p.F781I	ITGA4_uc010frj.1_Missense_Mutation_p.F263I|ITGA4_uc002unv.2_Missense_Mutation_p.F26I	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	781	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	TTTTACCAGGTTTGTAAACCC	0.308													12	34					0	0	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187698683	187698683	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:187698683G>A	uc002upu.1	-	6	858	c.818C>T	c.(817-819)ACA>ATA	p.T273I		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	273	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CTCACGAAATGTAAACGTGTG	0.363													17	50					0	0	0	0
COL5A2	1290	broad.mit.edu	37	2	189962026	189962026	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:189962026C>A	uc002uqk.2	-	6	708	c.433G>T	c.(433-435)GAG>TAG	p.E145*		NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	145					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			GGCCCTCGCTCTCCTCTTGGT	0.428													21	49					2.79863e-10	3.14525e-10	1	0
SATB2	23314	broad.mit.edu	37	2	200246504	200246504	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:200246504C>A	uc002uuy.1	-	4	1203	c.386G>T	c.(385-387)AGT>ATT	p.S129I	SATB2_uc010fsq.1_Intron|SATB2_uc002uuz.1_Missense_Mutation_p.S129I|SATB2_uc002uva.1_Missense_Mutation_p.S129I	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	129						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTCACATAACTGAGGGGGAG	0.438													19	58					3.32936e-07	3.58546e-07	1	0
PTH2R	5746	broad.mit.edu	37	2	209308252	209308252	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:209308252A>G	uc002vdb.2	+	6	902	c.689A>G	c.(688-690)AAA>AGA	p.K230R	PTH2R_uc010zjb.1_Missense_Mutation_p.K241R	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	230	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TCTGTGGACAAATCACAATAT	0.363													17	65					0	0	0	0
PRKAG3	53632	broad.mit.edu	37	2	219692034	219692034	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:219692034G>A	uc002vjb.1	-	9	957	c.938C>T	c.(937-939)CCG>CTG	p.P313L	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.R355W	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	313	CBS 2.				cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCTGACACCGGGTCAAGAAC	0.582													9	31					0	0	0	0
CCDC108	255101	broad.mit.edu	37	2	219868777	219868777	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:219868777G>T	uc002vjl.1	-	33	5536	c.5452C>A	c.(5452-5454)CCA>ACA	p.P1818T	uc010fvz.1_5'Flank|MIR375_hsa-mir-375|MI0000783_5'Flank	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	1818	Glu-rich.					integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TCAGGCTGTGGTGTGGGCCCG	0.383													75	270					3.54697e-40	4.97998e-40	1	0
SPEG	10290	broad.mit.edu	37	2	220353896	220353896	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:220353896G>A	uc010fwg.2	+	35	8270	c.8270G>A	c.(8269-8271)GGG>GAG	p.G2757E		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2757	Fibronectin type-III 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		GCTGGGCAGGGGCCCTTCAGC	0.592													33	130					0	0	0	0
TRIP12	9320	broad.mit.edu	37	2	230636255	230636255	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:230636255G>A	uc002vpw.1	-	38	5672	c.5563C>T	c.(5563-5565)CAG>TAG	p.Q1855*	TRIP12_uc002vpx.1_Nonsense_Mutation_p.Q1903*|TRIP12_uc002vpy.1_Nonsense_Mutation_p.Q1585*	NM_004238	NP_004229	Q14669	TRIPC_HUMAN	thyroid hormone receptor interactor 12	1855					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	proteasome complex	thyroid hormone receptor binding|ubiquitin-protein ligase activity			ovary(4)|lung(2)|breast(1)|central_nervous_system(1)|skin(1)	9		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.126)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;4.76e-13)|all cancers(144;4.34e-10)|LUSC - Lung squamous cell carcinoma(224;0.00864)|Lung(119;0.0116)		TAGAAGTACTGAAGATGACTG	0.408													12	48					0	0	0	0
INPP5D	3635	broad.mit.edu	37	2	233986855	233986855	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:233986855G>A	uc010zmo.1	+	3	390	c.237G>A	c.(235-237)CTG>CTA	p.L79L	INPP5D_uc010zmp.1_Silent_p.L79L	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	79	SH2.				apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		TCACCAAGCTGGACCAGCTCA	0.522													24	77					0	0	0	0
COL6A3	1293	broad.mit.edu	37	2	238267208	238267208	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:238267208C>A	uc002vwl.2	-	21	6712	c.6427G>T	c.(6427-6429)GGA>TGA	p.G2143*	COL6A3_uc002vwo.2_Nonsense_Mutation_p.G1937*|COL6A3_uc010znj.1_Nonsense_Mutation_p.G1536*|COL6A3_uc002vwp.1_5'Flank	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2143	Triple-helical region.|Collagen-like 2.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CCTTTCTCTCCTCGAGGTCCT	0.423													35	69					3.54909e-21	4.60067e-21	1	0
ING5	84289	broad.mit.edu	37	2	242644114	242644114	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:242644114G>T	uc002wcd.2	+	2	109	c.84G>T	c.(82-84)ATG>ATT	p.M28I	ING5_uc002wcc.1_Missense_Mutation_p.M28I	NM_032329	NP_115705	Q8WYH8	ING5_HUMAN	inhibitor of growth family, member 5	28					DNA replication|histone H3 acetylation|negative regulation of cell proliferation|negative regulation of growth|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex	protein binding|zinc ion binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;2.16e-33)|all cancers(36;4.99e-31)|OV - Ovarian serous cystadenocarcinoma(60;3.6e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.65e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0839)		TCCAGCTGATGCGAGAGCTGG	0.532													26	113					2.29764e-31	3.17139e-31	1	0
POFUT1	23509	broad.mit.edu	37	20	30803173	30803173	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:30803173C>A	uc002wxp.2	+	3	397	c.348C>A	c.(346-348)CAC>CAA	p.H116Q	POFUT1_uc002wxo.2_Missense_Mutation_p.H116Q|POFUT1_uc010ztt.1_Missense_Mutation_p.H8Q|POFUT1_uc010ztu.1_Intron	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	116					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CACCCACCCACTGGCCCCCTG	0.587													73	93					1.52223e-32	2.11301e-32	1	0
SPAG4	6676	broad.mit.edu	37	20	34208679	34208679	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:34208679A>G	uc002xdb.1	+	11	1268	c.1151A>G	c.(1150-1152)CAG>CGG	p.Q384R	SPAG4_uc010zvi.1_Missense_Mutation_p.Q307R	NM_003116	NP_003107	Q9NPE6	SPAG4_HUMAN	sperm associated antigen 4	384	SUN.				spermatogenesis	cilium|flagellar axoneme|integral to membrane	structural molecule activity				0	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			TCGGAGATTCAGACTTTCCAC	0.512													75	75					0	0	0	0
MATN4	8785	broad.mit.edu	37	20	43930020	43930020	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:43930020G>C	uc002xnn.2	-	4	894	c.707C>G	c.(706-708)TCC>TGC	p.S236C	MATN4_uc002xno.2_Intron|MATN4_uc002xnp.2_Intron|MATN4_uc010zwr.1_Missense_Mutation_p.S184C|MATN4_uc002xnr.1_Missense_Mutation_p.S236C	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	277	EGF-like 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				ACAGAAATAGGAGCCTGGGGA	0.572											OREG0025977	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	75					0	0	0	0
ZNF334	55713	broad.mit.edu	37	20	45130308	45130308	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:45130308G>C	uc002xsc.2	-	5	1854	c.1670C>G	c.(1669-1671)TCA>TGA	p.S557*	ZNF334_uc002xsa.2_Nonsense_Mutation_p.S580*|ZNF334_uc002xsb.2_Nonsense_Mutation_p.S519*|ZNF334_uc002xsd.2_Nonsense_Mutation_p.S519*|ZNF334_uc010ghl.2_Nonsense_Mutation_p.S556*	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	557	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				AGTCAGGGCTGACTTCCTGCA	0.448													46	170					0	0	0	0
TP53RK	112858	broad.mit.edu	37	20	45315596	45315596	+	Silent	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:45315596C>G	uc002xsk.2	-	2	781	c.558G>C	c.(556-558)CTG>CTC	p.L186L	SLC13A3_uc002xsg.1_5'Flank|SLC13A3_uc010gho.1_5'Flank|TP53RK_uc002xsj.2_3'UTR	NM_033550	NP_291028	Q96S44	PRPK_HUMAN	p53-related protein kinase	186	Protein kinase.				lipopolysaccharide biosynthetic process	membrane|nucleus	ATP binding|p53 binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Myeloproliferative disorder(115;0.0122)				AAATGAAACTCAGCCCAAAGT	0.493													24	73					0	0	0	0
ZNF831	128611	broad.mit.edu	37	20	57766302	57766302	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:57766302G>T	uc002yan.2	+	1	228	c.228G>T	c.(226-228)CCG>CCT	p.P76P		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	76	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CCCGCGCCCCGCTAGTGACGG	0.716													7	6					0.00198382	0.00202938	1	0
SLCO4A1	28231	broad.mit.edu	37	20	61288358	61288358	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:61288358G>A	uc002ydb.1	+	2	757	c.552G>A	c.(550-552)TCG>TCA	p.S184S	SLCO4A1_uc002ydc.1_RNA	NM_016354	NP_057438	Q96BD0	SO4A1_HUMAN	solute carrier organic anion transporter family	184	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(1)	1	Breast(26;3.65e-08)		BRCA - Breast invasive adenocarcinoma(19;2.33e-06)			GCACGGGGTCGCTGGTGTTCG	0.697													41	68					0	0	0	0
MYT1	4661	broad.mit.edu	37	20	62838988	62838988	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr20:62838988G>T	uc002yii.2	+	7	803	c.439G>T	c.(439-441)GGC>TGC	p.G147C	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	147					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CAACCCCATCGGCAGCGCCAC	0.557													35	167					6.70999e-13	7.86577e-13	1	0
TPTE	7179	broad.mit.edu	37	21	10920132	10920132	+	Silent	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr21:10920132T>A	uc002yip.1	-	19	1490	c.1122A>T	c.(1120-1122)ACA>ACT	p.T374T	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.T356T|TPTE_uc002yir.1_Silent_p.T336T|TPTE_uc010gkv.1_Silent_p.T236T	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	374	Phosphatase tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGGTTTTATCTGTTCGCCTTT	0.378													14	42					0	0	0	0
SLC37A1	54020	broad.mit.edu	37	21	43974185	43974185	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr21:43974185A>T	uc002zbi.2	+	11	1194	c.782A>T	c.(781-783)TAT>TTT	p.Y261F	SLC37A1_uc002zbj.2_Missense_Mutation_p.Y261F	NM_018964	NP_061837	P57057	GLPT_HUMAN	solute carrier family 37 member 1	261					carbohydrate transport|transmembrane transport	integral to membrane					0						TCAAAAGGCTATGAGAATGGT	0.383													7	8					0	0	0	0
ITGB2	3689	broad.mit.edu	37	21	46308803	46308803	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr21:46308803C>T	uc002zgd.2	-	13	1929	c.1885G>A	c.(1885-1887)GCC>ACC	p.A629T	ITGB2_uc002zge.2_Missense_Mutation_p.A629T|ITGB2_uc002zgf.3_Missense_Mutation_p.A629T|ITGB2_uc011afl.1_Missense_Mutation_p.A551T|ITGB2_uc010gpw.2_Missense_Mutation_p.A572T|ITGB2_uc002zgg.2_Missense_Mutation_p.A629T	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	629	Extracellular (Potential).				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	AGGCACTCGGCGCAGGAGCTG	0.692													14	29					0	0	0	0
MB	4151	broad.mit.edu	37	22	36006993	36006993	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:36006993C>G	uc003anz.2	-	2	336	c.256G>C	c.(256-258)GAG>CAG	p.E86Q	MB_uc003aoa.2_Missense_Mutation_p.E86Q|MB_uc003aob.2_Missense_Mutation_p.E86Q	NM_005368	NP_005359	P02144	MYG_HUMAN	myoglobin	86							heme binding|oxygen transporter activity				0						GGCTTAATCTCTGCCTCATGA	0.463													11	32					0	0	0	0
NCAPH2	29781	broad.mit.edu	37	22	50960669	50960669	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50960669C>T	uc003blr.3	+	14	1344	c.1222C>T	c.(1222-1224)CAG>TAG	p.Q408*	NCAPH2_uc003blv.2_Nonsense_Mutation_p.Q408*|NCAPH2_uc010hbb.2_Intron|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Nonsense_Mutation_p.Q408*|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	408					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		CCGGAAGCTGCAGAGGAGGGA	0.592													18	50					0	0	0	0
NCAPH2	29781	broad.mit.edu	37	22	50961569	50961569	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50961569C>A	uc003blr.3	+	19	1773	c.1651C>A	c.(1651-1653)CGT>AGT	p.R551S	NCAPH2_uc003blv.2_Missense_Mutation_p.R551S|NCAPH2_uc010hbb.2_Intron|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Missense_Mutation_p.R552S|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	551					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		CGAGGTGTGTCGTTCCATGCT	0.647													11	35					5.50884e-06	5.86811e-06	1	0
NCAPH2	29781	broad.mit.edu	37	22	50961585	50961585	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50961585C>T	uc003blr.3	+	19	1789	c.1667C>T	c.(1666-1668)TCC>TTC	p.S556F	NCAPH2_uc003blv.2_Missense_Mutation_p.S556F|NCAPH2_uc010hbb.2_Intron|NCAPH2_uc003blu.3_RNA|NCAPH2_uc003bls.3_RNA|NCAPH2_uc003blt.3_RNA|NCAPH2_uc003blw.3_RNA|NCAPH2_uc003blx.3_Missense_Mutation_p.S557F|NCAPH2_uc003bly.3_RNA	NM_152299	NP_689512	Q6IBW4	CNDH2_HUMAN	kleisin beta isoform 2	556					chromosome condensation	chromosome|nucleus				ovary(1)|skin(1)	2		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.212)		ATGCTGGCCTCCCTGCAGCTG	0.637													14	36					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962141	50962141	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50962141C>T	uc003bma.2	-	2	876	c.700G>A	c.(700-702)GAC>AAC	p.D234N	SCO2_uc003blz.3_Missense_Mutation_p.D234N	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	234	Thioredoxin.				cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		AAGAGGCCGTCAGGGTTGAGC	0.582													42	170					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962592	50962592	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50962592C>G	uc003bma.2	-	2	425	c.249G>C	c.(247-249)GAG>GAC	p.E83D	SCO2_uc003blz.3_Missense_Mutation_p.E83D	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	83					cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		GCTGCAGCCTCTCCTTCTCAG	0.687													20	62					0	0	0	0
SCO2	9997	broad.mit.edu	37	22	50962711	50962711	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50962711C>T	uc003bma.2	-	2	306	c.130G>A	c.(130-132)GCA>ACA	p.A44T	SCO2_uc003blz.3_Missense_Mutation_p.A44T	NM_005138	NP_005129	O43819	SCO2_HUMAN	cytochrome oxidase deficient homolog 2	44					cell redox homeostasis|cellular copper ion homeostasis|copper ion transport|oxidation-reduction process|respiratory chain complex IV assembly	mitochondrial inner membrane	copper ion binding				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CCTGTCTCTGCAGGGCCCTGC	0.687													22	37					0	0	0	0
TYMP	1890	broad.mit.edu	37	22	50967726	50967726	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:50967726C>G	uc003bmb.3	-	2	376	c.256G>C	c.(256-258)GAG>CAG	p.E86Q	TYMP_uc003bmc.3_Missense_Mutation_p.E86Q|TYMP_uc003bmd.3_Missense_Mutation_p.E86Q|TYMP_uc010hbd.2_Missense_Mutation_p.E86Q|TYMP_uc003bme.3_Missense_Mutation_p.E86Q|TYMP_uc003bmf.3_Missense_Mutation_p.E86Q|TYMP_uc011arz.1_Missense_Mutation_p.E86Q	NM_001113756	NP_001107228	P19971	TYPH_HUMAN	endothelial cell growth factor 1	86					angiogenesis|cell differentiation|chemotaxis|DNA replication|mitochondrial genome maintenance|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage|pyrimidine nucleotide metabolic process	cytosol	growth factor activity|platelet-derived growth factor receptor binding|pyrimidine-nucleoside phosphorylase activity|thymidine phosphorylase activity			ovary(1)	1		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)	Capecitabine(DB01101)|Docetaxel(DB01248)|Floxuridine(DB00322)|Fluorouracil(DB00544)|Sulfasalazine(DB00795)|Tamoxifen(DB00675)	GAGGTCTCCTCCAGATCCATG	0.677													10	47					0	0	0	0
SETD5	55209	broad.mit.edu	37	3	9486800	9486800	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:9486800A>C	uc003brt.2	+	12	1691	c.1256A>C	c.(1255-1257)AAT>ACT	p.N419T	SETD5_uc003brs.1_Missense_Mutation_p.N400T|SETD5_uc003bru.2_Missense_Mutation_p.N321T|SETD5_uc003brv.2_Missense_Mutation_p.N308T|SETD5_uc010hck.2_5'UTR|SETD5_uc003brw.1_Missense_Mutation_p.N88T|SETD5_uc003brx.2_Missense_Mutation_p.N88T	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	419										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		AGGAATCCTAATGCTACAGAA	0.463													16	32					0	0	0	0
SCN5A	6331	broad.mit.edu	37	3	38622704	38622704	+	Silent	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:38622704A>G	uc003cio.2	-	17	3140	c.2946T>C	c.(2944-2946)TGT>TGC	p.C982C	SCN5A_uc003cin.2_Silent_p.C982C|SCN5A_uc003cil.3_Silent_p.C982C|SCN5A_uc010hhi.2_Silent_p.C982C|SCN5A_uc010hhk.2_Silent_p.C982C|SCN5A_uc011ayr.1_Silent_p.C982C|SCN5A_uc010hhj.1_Silent_p.C593C	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	982					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCAGGAGACCACAGCAGAAAT	0.672													2	4					0	0	0	0
LRRC2	79442	broad.mit.edu	37	3	46586628	46586628	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:46586628T>C	uc010hji.2	-	3	605	c.241A>G	c.(241-243)AGG>GGG	p.R81G	LRRC2_uc003cpu.3_Missense_Mutation_p.R81G	NM_024512	NP_078788	Q9BYS8	LRRC2_HUMAN	leucine rich repeat containing 2	81										ovary(1)	1		Ovarian(412;0.0563)		OV - Ovarian serous cystadenocarcinoma(275;6.37e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00133)|KIRC - Kidney renal clear cell carcinoma(197;0.0214)|Kidney(197;0.0254)		AGAGTGTTCCTTTCAATCTTG	0.532													69	180					0	0	0	0
COL7A1	1294	broad.mit.edu	37	3	48615932	48615932	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:48615932C>T	uc003ctz.2	-	63	5442	c.5441G>A	c.(5440-5442)CGT>CAT	p.R1814H		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1814	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CTGTTCTCCACGGAGGCCTGG	0.552													30	71					0	0	0	0
CELSR3	1951	broad.mit.edu	37	3	48687962	48687962	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:48687962C>T	uc003cul.2	-	16	6704	c.6423G>A	c.(6421-6423)CAG>CAA	p.Q2141Q	CELSR3_uc003cuf.1_Silent_p.Q2211Q|CELSR3_uc010hkg.2_Silent_p.Q119Q	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2141	Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CAAACTTTGTCTGGGGCCACC	0.617													6	18					0	0	0	0
CELSR3	1951	broad.mit.edu	37	3	48688839	48688839	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:48688839C>G	uc003cul.2	-	14	6420	c.6139G>C	c.(6139-6141)GGT>CGT	p.G2047R	CELSR3_uc003cuf.1_Missense_Mutation_p.G2117R|CELSR3_uc010hkg.2_Missense_Mutation_p.G25R	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	2047	Extracellular (Potential).|EGF-like 7; calcium-binding.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GGATCAAAACCTTTGTGAACA	0.577													26	61					0	0	0	0
CELSR3	1951	broad.mit.edu	37	3	48689419	48689419	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:48689419C>T	uc003cul.2	-	12	6095	c.5814G>A	c.(5812-5814)GTG>GTA	p.V1938V	CELSR3_uc003cuf.1_Silent_p.V2008V|CELSR3_uc010hkg.2_5'UTR	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	1938	Extracellular (Potential).|Laminin G-like 2.				homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		GCTCCGCATTCACTCGGTGGC	0.652													17	32					0	0	0	0
RBM5	10181	broad.mit.edu	37	3	50127886	50127886	+	Splice_Site	SNP	T	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:50127886T>G	uc003cyg.2	+	2	165	c.17_splice	c.e2+2	p.R6_splice	RBM6_uc010hld.1_Splice_Site|RBM6_uc010hle.1_Splice_Site|RBM6_uc010hlf.1_Splice_Site|RBM5_uc003cyf.2_Splice_Site_p.R6_splice|RBM5_uc011bdj.1_Splice_Site|RBM5_uc011bdk.1_Splice_Site	NM_005778	NP_005769	P52756	RBM5_HUMAN	RNA binding motif protein 5						apoptosis|negative regulation of cell proliferation|positive regulation of apoptosis|regulation of alternative nuclear mRNA splicing, via spliceosome|spliceosome assembly	nucleoplasm|spliceosomal complex	DNA binding|mRNA binding|nucleotide binding|protein binding|zinc ion binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000121)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		AGACAAAAGGTAAGTTACTAC	0.358													32	51					0	0	0	0
VPRBP	9730	broad.mit.edu	37	3	51450781	51450781	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:51450781C>G	uc003dbe.1	-	20	4159	c.3991G>C	c.(3991-3993)GGG>CGG	p.G1331R	VPRBP_uc003dbf.1_Missense_Mutation_p.G607R	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1331					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		AAGGATGACCCAAAGGGGCTT	0.428													10	17					0	0	0	0
PBRM1	55193	broad.mit.edu	37	3	52662995	52662995	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:52662995T>C	uc003des.2	-	12	1370	c.1358A>G	c.(1357-1359)AAT>AGT	p.N453S	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.N453S|PBRM1_uc003der.2_Missense_Mutation_p.N421S|PBRM1_uc003det.2_Missense_Mutation_p.N453S|PBRM1_uc003deu.2_Missense_Mutation_p.N453S|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.N453S|PBRM1_uc010hmk.1_Missense_Mutation_p.N453S|PBRM1_uc003dey.2_Missense_Mutation_p.N453S|PBRM1_uc003dez.1_Missense_Mutation_p.N453S|PBRM1_uc003dfb.1_Missense_Mutation_p.N351S	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	453	Bromo 3.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		AAACATTAAATTCAGATCACA	0.328			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								26	35					0	0	0	0
FILIP1L	11259	broad.mit.edu	37	3	99567462	99567462	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:99567462G>T	uc003dtm.2	-	5	3521	c.3058C>A	c.(3058-3060)CCA>ACA	p.P1020T	C3orf26_uc003dtk.1_Intron|C3orf26_uc003dtl.2_Intron|FILIP1L_uc003dto.2_Missense_Mutation_p.P1020T|FILIP1L_uc010hpf.2_Missense_Mutation_p.P596T|FILIP1L_uc010hpg.2_Missense_Mutation_p.P780T|FILIP1L_uc003dtn.2_Missense_Mutation_p.P780T|FILIP1L_uc003dtp.1_Missense_Mutation_p.P780T	NM_182909	NP_878913	Q4L180	FIL1L_HUMAN	filamin A interacting protein 1-like isoform 1	1020						cytoplasm|membrane|myosin complex|nucleus				ovary(1)	1						GTTGGTTCTGGGGAGCGTCCC	0.512													38	174					1.04594e-18	1.31413e-18	1	0
ZBTB11	27107	broad.mit.edu	37	3	101384101	101384101	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:101384101C>T	uc003dve.3	-	4	1560	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	444					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ATTACATTCTCTTTTGAAAGT	0.348													52	181					0	0	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111797614	111797614	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:111797614G>A	uc010hqb.2	+	15	2042	c.1872G>A	c.(1870-1872)CAG>CAA	p.Q624Q	TMPRSS7_uc011bhr.1_Silent_p.Q479Q	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	750	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						TCGTTCTGCAGCAAGCGGAGG	0.413													23	92					0	0	0	0
HGD	3081	broad.mit.edu	37	3	120363269	120363269	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:120363269G>C	uc003edw.2	-	10	1041	c.671C>G	c.(670-672)CCT>CGT	p.P224R	HGD_uc003edv.2_Missense_Mutation_p.P83R	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	224					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GAAATCACGAGGATTGGCCAA	0.448													30	70					0	0	0	0
GOLGB1	2804	broad.mit.edu	37	3	121386956	121386956	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:121386956C>G	uc003eei.3	-	19	9482	c.9356G>C	c.(9355-9357)GGA>GCA	p.G3119A	GOLGB1_uc010hrc.2_Missense_Mutation_p.G3129A|GOLGB1_uc003eej.3_Missense_Mutation_p.G3085A	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	3119	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TCTGTGAACTCCATTCTTTTC	0.463													44	34					0	0	0	0
ADCY5	111	broad.mit.edu	37	3	123023004	123023004	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:123023004G>C	uc003egh.1	-	13	2469	c.2469C>G	c.(2467-2469)CTC>CTG	p.L823L	ADCY5_uc003egg.1_Silent_p.L456L|ADCY5_uc003egi.1_Silent_p.L382L	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	823					activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TCTTCCTGGAGAGGGTCTGCA	0.393													16	88					0	0	0	0
A4GNT	51146	broad.mit.edu	37	3	137843704	137843704	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:137843704T>A	uc003ers.2	-	3	627	c.425A>T	c.(424-426)GAG>GTG	p.E142V		NM_016161	NP_057245	Q9UNA3	A4GCT_HUMAN	alpha-1,4-N-acetylglucosaminyltransferase	142	Lumenal (Potential).				protein O-linked glycosylation	Golgi membrane|Golgi stack|integral to membrane|membrane fraction	acetylglucosaminyltransferase activity|galactosyltransferase activity			central_nervous_system(1)	1						CCAGTTTCTCTCTGCGCTGGC	0.597													42	73					0	0	0	0
AGTR1	185	broad.mit.edu	37	3	148459701	148459701	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:148459701T>A	uc003ewg.2	+	4	1325	c.879T>A	c.(877-879)TTT>TTA	p.F293L	AGTR1_uc003ewh.2_Missense_Mutation_p.F293L|AGTR1_uc003ewi.2_Missense_Mutation_p.F293L|AGTR1_uc003ewj.2_Missense_Mutation_p.F293L|AGTR1_uc003ewk.2_Missense_Mutation_p.F293L	NM_031850	NP_114038	P30556	AGTR1_HUMAN	angiotensin II receptor, type 1	293	Helical; Name=7; (Potential).				calcium-mediated signaling|cell chemotaxis|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|kidney development|low-density lipoprotein particle remodeling|positive regulation of cellular protein metabolic process|positive regulation of cholesterol esterification|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of phospholipase A2 activity|positive regulation of reactive oxygen species metabolic process|regulation of cell growth|regulation of cell proliferation|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|Rho protein signal transduction		acetyltransferase activator activity|angiotensin type I receptor activity|angiotensin type II receptor activity|bradykinin receptor binding|protein heterodimerization activity				0			LUSC - Lung squamous cell carcinoma(72;0.127)|Lung(72;0.152)		Candesartan(DB00796)|Eprosartan(DB00876)|Forasartan(DB01342)|Irbesartan(DB01029)|Losartan(DB00678)|Olmesartan(DB00275)|Saprisartan(DB01347)|Spironolactone(DB00421)|Tasosartan(DB01349)|Telmisartan(DB00966)|Valsartan(DB00177)	TAGCTTATTTTAACAATTGCC	0.363													85	71					0	0	0	0
P2RY13	53829	broad.mit.edu	37	3	151046465	151046465	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:151046465T>A	uc003eyv.2	-	2	400	c.379A>T	c.(379-381)ATG>TTG	p.M127L	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron	NM_176894	NP_795713	Q9BPV8	P2Y13_HUMAN	purinergic receptor P2Y, G-protein coupled, 13	127	Helical; Name=3; (Potential).					integral to membrane|plasma membrane				ovary(3)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0189)|Lung(72;0.0278)			CCCACATACATGGTCTCATAA	0.423													22	104					0	0	0	0
SI	6476	broad.mit.edu	37	3	164737429	164737430	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:164737429_164737430CC>AA	uc003fei.2	-	28	3445_3446	c.3383_3384GG>TT	c.(3382-3384)TGG>TTT	p.W1128F		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1128	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CCCAAGTATTCCAGTTCAGATC	0.436										HNSCC(35;0.089)			74	53					0	0	0	0
SI	6476	broad.mit.edu	37	3	164754255	164754255	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:164754255G>A	uc003fei.2	-	22	2499	c.2437C>T	c.(2437-2439)CCT>TCT	p.P813S		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	813	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	AGTCCTAGAGGATTCTTACGG	0.348										HNSCC(35;0.089)			38	88					0	0	0	0
KIAA1530	57654	broad.mit.edu	37	4	1343557	1343557	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:1343557G>T	uc003gde.3	+	3	791	c.344G>T	c.(343-345)CGG>CTG	p.R115L		NM_020894	NP_065945	Q2YD98	K1530_HUMAN	hypothetical protein LOC57654	115											0			OV - Ovarian serous cystadenocarcinoma(23;0.0138)			GCGACCACCCGGGCCGTGGAA	0.622													8	21					4.68919e-08	5.1288e-08	1	0
DCAF4L1	285429	broad.mit.edu	37	4	41984475	41984475	+	Silent	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:41984475T>C	uc003gwk.2	+	1	763	c.666T>C	c.(664-666)GAT>GAC	p.D222D		NM_001029955	NP_001025126	Q3SXM0	DC4L1_HUMAN	WD repeat domain 21B	222										skin(1)	1						AGTCATTTGATACCAGCAGTG	0.547													45	215					0	0	0	0
KIAA1211	57482	broad.mit.edu	37	4	57182085	57182085	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:57182085C>T	uc003hbk.2	+	8	2808	c.2417C>T	c.(2416-2418)CCT>CTT	p.P806L	KIAA1211_uc010iha.2_Missense_Mutation_p.P799L|KIAA1211_uc011bzz.1_Missense_Mutation_p.P716L|KIAA1211_uc003hbm.1_Missense_Mutation_p.P692L	NM_020722	NP_065773	Q6ZU35	K1211_HUMAN	hypothetical protein LOC57482	806										ovary(1)|skin(1)	2	Glioma(25;0.08)|all_neural(26;0.101)					CTTCCTTACCCTCCGCAGAAA	0.592													16	56					0	0	0	0
EREG	2069	broad.mit.edu	37	4	75231040	75231040	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:75231040G>A	uc003hie.1	+	1	181	c.15G>A	c.(13-15)AGG>AGA	p.R5R	EREG_uc003hid.2_5'UTR	NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	5					angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			CCGCGGGGAGGAGGATGGAGA	0.706													11	38					0	0	0	0
GAR1	54433	broad.mit.edu	37	4	110737454	110737454	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:110737454G>T	uc003hzt.2	+	2	441	c.134G>T	c.(133-135)GGC>GTC	p.G45V	GAR1_uc003hzu.2_Missense_Mutation_p.G45V|GAR1_uc010imh.1_Missense_Mutation_p.G45V|GAR1_uc010imi.2_Missense_Mutation_p.G45V	NM_018983	NP_061856	Q9NY12	GAR1_HUMAN	nucleolar protein family A, member 1	45	RGG-box 1.				rRNA processing|snRNA pseudouridine synthesis	box H/ACA snoRNP complex|Cajal body	cation channel activity|pseudouridine synthase activity|snoRNA binding				0						agaggcggcggcaggggaggA	0.244													21	40					6.33239e-15	7.69943e-15	1	0
FAT4	79633	broad.mit.edu	37	4	126411357	126411357	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:126411357G>C	uc003ifj.3	+	17	13380	c.13380G>C	c.(13378-13380)AGG>AGC	p.R4460S	FAT4_uc011cgp.1_Missense_Mutation_p.R2701S|FAT4_uc003ifi.1_Missense_Mutation_p.R1937S	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4460	EGF-like 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACACGGGAAGGACCTGTGAGA	0.627													26	75					0	0	0	0
SPOCK3	50859	broad.mit.edu	37	4	167983653	167983653	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:167983653G>T	uc003iri.1	-	4	375	c.234C>A	c.(232-234)CCC>CCA	p.P78P	SPOCK3_uc011cjp.1_Silent_p.P75P|SPOCK3_uc011cjq.1_Silent_p.P87P|SPOCK3_uc011cjr.1_5'UTR|SPOCK3_uc003irj.1_Silent_p.P75P|SPOCK3_uc011cjs.1_Silent_p.P27P|SPOCK3_uc011cjt.1_Intron|SPOCK3_uc011cju.1_Intron|SPOCK3_uc011cjv.1_Intron|SPOCK3_uc003irk.3_Silent_p.P75P|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	78					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		CCTGATCGAAGGGTTTTCCTG	0.323													24	36					4.7796e-09	5.32274e-09	1	0
SDHA	6389	broad.mit.edu	37	5	233665	233665	+	Silent	SNP	C	T	T	rs142849100	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:233665C>T	uc003jao.3	+	8	1084	c.969C>T	c.(967-969)GGC>GGT	p.G323G	SDHA_uc003jan.2_Silent_p.G323G|SDHA_uc011clv.1_Silent_p.G323G|SDHA_uc011clw.1_Silent_p.G275G|SDHA_uc003jap.3_Silent_p.G323G|SDHA_uc003jaq.3_Silent_p.G98G|SDHA_uc003jar.3_5'UTR	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	323					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	ACAGTCAAGGCGAAAGGTTTA	0.502									Familial_Paragangliomas				25	132					0	0	0	0
TERT	7015	broad.mit.edu	37	5	1282690	1282690	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:1282690C>A	uc003jcb.1	-	3	1681	c.1623G>T	c.(1621-1623)CTG>CTT	p.L541L	TERT_uc003jbz.1_5'UTR|TERT_uc003jca.1_Silent_p.L541L|TERT_uc003jcc.1_Silent_p.L541L|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	541	RNA-interacting domain 2.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGAACTTGGCCAGGATCTCCT	0.547									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				10	21					7.03913e-09	7.78594e-09	1	0
ADCY2	108	broad.mit.edu	37	5	7773198	7773198	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:7773198C>A	uc003jdz.1	+	18	2435	c.2368C>A	c.(2368-2370)CAG>AAG	p.Q790K	ADCY2_uc011cmo.1_Missense_Mutation_p.Q610K	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	790					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						CGACTACAGCCAGGTCTTATT	0.502													17	58					1.01871e-10	1.15816e-10	1	0
PRDM9	56979	broad.mit.edu	37	5	23524457	23524457	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:23524457C>A	uc003jgo.2	+	10	1147	c.965C>A	c.(964-966)GCC>GAC	p.A322D		NM_020227	NP_064612	Q9NQV7	PRDM9_HUMAN	PR domain containing 9	322	SET.				meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleoplasm	histone-lysine N-methyltransferase activity|nucleic acid binding|zinc ion binding			ovary(3)|large_intestine(2)|pancreas(1)	6						GTGAACTGTGCCCGGGATGAT	0.537										HNSCC(3;0.000094)			17	48					4.35082e-09	4.85626e-09	1	0
ZFR	51663	broad.mit.edu	37	5	32390394	32390394	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:32390394G>A	uc003jhr.1	-	12	2209	c.2129C>T	c.(2128-2130)CCT>CTT	p.P710L	ZFR_uc011cny.1_5'Flank	NM_016107	NP_057191	Q96KR1	ZFR_HUMAN	zinc finger RNA binding protein	710					multicellular organismal development	chromosome|cytoplasm|nucleus	DNA binding|RNA binding|zinc ion binding				0				STAD - Stomach adenocarcinoma(35;0.19)		AGGCCCCTGAGGCTGAGGAGG	0.532													27	99					0	0	0	0
ELOVL7	79993	broad.mit.edu	37	5	60063670	60063670	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:60063670G>A	uc003jsi.3	-	5	516	c.316C>T	c.(316-318)CGG>TGG	p.R106W	ELOVL7_uc011cqo.1_Missense_Mutation_p.R19W|ELOVL7_uc010iwk.2_Missense_Mutation_p.R106W|ELOVL7_uc003jsj.3_Missense_Mutation_p.R93W	NM_024930	NP_079206	A1L3X0	ELOV7_HUMAN	elongation of very long chain fatty acids-like	106					fatty acid elongation, polyunsaturated fatty acid|fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	fatty acid elongase activity|protein binding				0		Lung NSC(810;2.56e-06)|Prostate(74;0.0115)|Breast(144;0.0244)|Ovarian(174;0.0481)				GTGGGTGACCGTGAATAGTCA	0.363													17	43					0	0	0	0
MAST4	375449	broad.mit.edu	37	5	66458461	66458461	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:66458461C>G	uc003jut.1	+	27	3313	c.3245C>G	c.(3244-3246)GCC>GGC	p.A1082G	MAST4_uc003juw.2_Missense_Mutation_p.A1010G	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1274						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		AAAAAGCTAGCCAAGCAGCCT	0.473													13	36					0	0	0	0
MTX3	345778	broad.mit.edu	37	5	79281439	79281439	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:79281439C>G	uc010jag.2	-	8	810	c.783G>C	c.(781-783)CAG>CAC	p.Q261H	MTX3_uc010jah.2_Intron|MTX3_uc003kge.3_Missense_Mutation_p.Q200H	NM_001010891	NP_001010891	Q5HYI7	MTX3_HUMAN	metaxin 3	261					protein targeting to mitochondrion	mitochondrial outer membrane					0		Lung NSC(167;0.00428)|all_lung(232;0.00455)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;1.63e-45)|Epithelial(54;2.9e-40)|all cancers(79;4.68e-35)		GTGTGAGTTTCTGCAGATTTG	0.373													8	11					0	0	0	0
VCAN	1462	broad.mit.edu	37	5	82843903	82843903	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:82843903G>A	uc003kii.3	+	10	9849	c.9493G>A	c.(9493-9495)GAT>AAT	p.D3165N	VCAN_uc003kij.3_Missense_Mutation_p.D2178N|VCAN_uc010jau.2_Missense_Mutation_p.D1411N|VCAN_uc003kik.3_Missense_Mutation_p.D424N|VCAN_uc003kil.3_Missense_Mutation_p.D1829N	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3165					cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TTGTGAGCAAGGTAAGAGCTA	0.383													13	30					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90106265	90106265	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:90106265T>A	uc003kju.2	+	74	15284	c.15188T>A	c.(15187-15189)CTG>CAG	p.L5063Q	GPR98_uc003kjt.2_Missense_Mutation_p.L2769Q|GPR98_uc003kjw.2_Missense_Mutation_p.L724Q	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5063	Calx-beta 33.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AATGGGGAACTGTTTTTTCAA	0.358													7	10					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90144565	90144565	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:90144565C>G	uc003kju.2	+	79	17227	c.17131C>G	c.(17131-17133)CAC>GAC	p.H5711D	GPR98_uc003kjt.2_Missense_Mutation_p.H3417D|GPR98_uc003kjw.2_Missense_Mutation_p.H1372D	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5711	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GGGATTCAGTCACTTTGCTGA	0.393													14	24					0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90149125	90149125	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:90149125C>A	uc003kju.2	+	80	17325	c.17229C>A	c.(17227-17229)TGC>TGA	p.C5743*	GPR98_uc003kjt.2_Nonsense_Mutation_p.C3449*|GPR98_uc003kjw.2_Nonsense_Mutation_p.C1404*	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	5743	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTGATAGTTGCCCATATTTGT	0.368													23	73					6.12954e-19	7.74091e-19	1	0
SLC22A4	6583	broad.mit.edu	37	5	131647926	131647926	+	Missense_Mutation	SNP	G	A	A	rs141478353		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:131647926G>A	uc003kwq.2	+	2	631	c.466G>A	c.(466-468)GGC>AGC	p.G156S	SLC22A4_uc010jdq.1_RNA|uc003kwr.3_RNA	NM_003059	NP_003050	Q9H015	S22A4_HUMAN	solute carrier family 22 member 4	156	Helical; Name=2; (Potential).				body fluid secretion|sodium ion transport	apical plasma membrane|integral to plasma membrane|mitochondrion	ATP binding|carnitine transporter activity|cation:cation antiporter activity|PDZ domain binding|secondary active organic cation transmembrane transporter activity|symporter activity				0		all_cancers(142;0.0752)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Carnitine(DB00583)	CGTGCTCCTCGGCTCCTTCGT	0.587													64	219					0	0	0	0
CATSPER3	347732	broad.mit.edu	37	5	134343829	134343829	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:134343829G>A	uc003lag.2	+	4	743	c.675G>A	c.(673-675)ACG>ACA	p.T225T		NM_178019	NP_821138	Q86XQ3	CTSR3_HUMAN	cation channel, sperm associated 3	225					cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GCTTGGCCACGGTACTGTGTT	0.562													15	38					0	0	0	0
TRPC7	57113	broad.mit.edu	37	5	135692925	135692925	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:135692925C>A	uc003lbn.1	-	1	151	c.148G>T	c.(148-150)GCT>TCT	p.A50S	TRPC7_uc010jef.1_Missense_Mutation_p.A42S|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Missense_Mutation_p.A42S|TRPC7_uc010jei.1_Missense_Mutation_p.A42S|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	51	Cytoplasmic (Potential).|ANK 1.				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CCATACTCAGCCGAGTCCAGG	0.607													49	178					1.38909e-20	1.78182e-20	1	0
KDM3B	51780	broad.mit.edu	37	5	137726869	137726869	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:137726869G>A	uc003lcy.1	+	8	1748	c.1548G>A	c.(1546-1548)CAG>CAA	p.Q516Q	KDM3B_uc010jew.1_Silent_p.Q172Q|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	516					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						AAGAGGCACAGAAAGACACTG	0.438													15	42					0	0	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139907848	139907848	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:139907848T>G	uc003lfs.1	+	29	5441	c.5317T>G	c.(5317-5319)TTG>GTG	p.L1773V	ANKHD1_uc003lfr.2_Missense_Mutation_p.L1773V|ANKHD1-EIF4EBP3_uc011czh.1_Missense_Mutation_p.L512V|ANKHD1_uc003lfw.2_Missense_Mutation_p.L411V|ANKHD1_uc010jfl.2_Missense_Mutation_p.L208V|ANKHD1-EIF4EBP3_uc003lfx.1_5'UTR	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	1773						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACTGGAAGACTTGATTCCTAA	0.393													24	75					0	0	0	0
PCDHB9	56127	broad.mit.edu	37	5	140568492	140568492	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:140568492C>G	uc003liw.1	+	3	1601	c.1601C>G	c.(1600-1602)TCA>TGA	p.S534*		NM_019119	NP_061992	Q9Y5E1	PCDB9_HUMAN	protocadherin beta 9 precursor	534	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGGGCGCCTCAGACCGCGGC	0.662													25	86					0	0	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711648	140711648	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:140711648C>A	uc003lji.1	+	1	1397	c.1397C>A	c.(1396-1398)CCC>CAC	p.P466H	PCDHGA1_uc011dan.1_Missense_Mutation_p.P466H	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	466	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAAAACAACCCCAGAGGAGCC	0.483													25	96					6.55177e-30	8.94253e-30	1	0
PCDHGA9	56107	broad.mit.edu	37	5	140784222	140784222	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:140784222C>G	uc003lkh.1	+	1	1703	c.1703C>G	c.(1702-1704)CCC>CGC	p.P568R	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.P568R	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	568	Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCTGCCCTCCCCACTGATGGT	0.552													67	298					0	0	0	0
FAT2	2196	broad.mit.edu	37	5	150945353	150945353	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:150945353G>A	uc003lue.3	-	1	3153	c.3140C>T	c.(3139-3141)TCG>TTG	p.S1047L	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.S1047L	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1047	Cadherin 9.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding	p.S1047*(1)		ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CTGAGTTCCCGAGGGGCTGTT	0.597													23	83					0	0	0	0
GRIA1	2890	broad.mit.edu	37	5	153085517	153085517	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:153085517G>C	uc003lva.3	+	11	2078	c.1713G>C	c.(1711-1713)GAG>GAC	p.E571D	GRIA1_uc003luy.3_Missense_Mutation_p.E571D|GRIA1_uc003luz.3_Missense_Mutation_p.E476D|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.E491D|GRIA1_uc011dcx.1_Missense_Mutation_p.E502D|GRIA1_uc011dcy.1_Missense_Mutation_p.E581D|GRIA1_uc011dcz.1_Missense_Mutation_p.E581D|GRIA1_uc010jia.1_Missense_Mutation_p.E551D	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	571	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AAGAGTTTGAGGAAGGACGGG	0.488													34	100					0	0	0	0
FAM71B	153745	broad.mit.edu	37	5	156589904	156589904	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:156589904C>T	uc003lwn.2	-	2	1472	c.1372G>A	c.(1372-1374)GGG>AGG	p.G458R		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	458	Bipartite nuclear localization signal (Potential).					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TTCTTGTCCCCCGCTCTCCTG	0.483													28	85					0	0	0	0
CYFIP2	26999	broad.mit.edu	37	5	156810320	156810320	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:156810320G>T	uc003lwq.2	+	30	3298	c.3160G>T	c.(3160-3162)GCC>TCC	p.A1054S	CYFIP2_uc011ddn.1_Missense_Mutation_p.A1028S|CYFIP2_uc011ddo.1_Missense_Mutation_p.A858S|CYFIP2_uc003lwr.2_Missense_Mutation_p.A1054S|CYFIP2_uc003lws.2_Missense_Mutation_p.A1054S|CYFIP2_uc003lwt.2_Missense_Mutation_p.A957S|CYFIP2_uc011ddp.1_Missense_Mutation_p.A788S|CYFIP2_uc003lwv.2_Missense_Mutation_p.A9S	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	1079					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGCCAAGTATGCCCCGCTCCA	0.502													12	24					2.62699e-14	3.16271e-14	1	0
ODZ2	57451	broad.mit.edu	37	5	167673800	167673800	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:167673800A>G	uc010jjd.2	+	27	5829	c.5829A>G	c.(5827-5829)ATA>ATG	p.I1943M	ODZ2_uc003lzr.3_Missense_Mutation_p.I1713M|ODZ2_uc003lzt.3_Missense_Mutation_p.I1316M|ODZ2_uc010jje.2_Missense_Mutation_p.I1207M	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTCAGTATATATTTGAGTATG	0.517													112	368					0	0	0	0
GABRP	2568	broad.mit.edu	37	5	170236736	170236736	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:170236736C>A	uc003mau.2	+	9	1195	c.997C>A	c.(997-999)CAG>AAG	p.Q333K	GABRP_uc011dev.1_Intron	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	333	Cytoplasmic (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CAGTTCCTTACAGCAGATGGC	0.512											OREG0017032	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	92					1.87028e-06	1.9966e-06	1	0
GRM6	2916	broad.mit.edu	37	5	178418425	178418425	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:178418425C>A	uc003mjr.2	-	3	1036	c.857G>T	c.(856-858)AGG>ATG	p.R286M	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	286	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ACTGTCCCACCTGATGTCATC	0.597													72	167					5.21738e-30	7.14111e-30	1	0
NUP153	9972	broad.mit.edu	37	6	17629417	17629417	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:17629417G>C	uc003ncd.1	-	18	3213	c.3013C>G	c.(3013-3015)CTT>GTT	p.L1005V	NUP153_uc011dje.1_Missense_Mutation_p.L1036V|NUP153_uc010jpl.1_Missense_Mutation_p.L963V	NM_005124	NP_005115	P49790	NU153_HUMAN	nucleoporin 153kDa	1005					carbohydrate metabolic process|glucose transport|interspecies interaction between organisms|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleolus|nucleoplasm	DNA binding|protein binding|transporter activity|zinc ion binding			lung(4)|ovary(2)|breast(2)|skin(1)	9	Breast(50;0.0259)|Ovarian(93;0.0584)	all_hematologic(90;0.125)	all cancers(50;0.0981)|Epithelial(50;0.112)			TCCTGTCCAAGATTAGATACC	0.378													11	23					0	0	0	0
HIST1H3E	8353	broad.mit.edu	37	6	26225383	26225383	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:26225383A>G	uc003nhb.2	+	2	361	c.1A>G	c.(1-3)ATG>GTG	p.M1V	HIST1H3E_uc003nhc.3_Missense_Mutation_p.M1V	NM_021018	NP_066298	P68431	H31_HUMAN	histone cluster 1, H3f	1					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.0223)|Acute lymphoblastic leukemia(11;0.0351)				CAGATGAACTATGGCGCGTAC	0.517													29	96					0	0	0	0
HIST1H2AH	85235	broad.mit.edu	37	6	27114966	27114966	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:27114966C>A	uc003niz.2	+	1	59	c.59C>A	c.(58-60)TCT>TAT	p.S20Y	HIST1H2BK_uc003nix.1_5'Flank|hsa-mir-3143|MI0014167_5'Flank	NM_080596	NP_542163	Q96KK5	H2A1H_HUMAN	histone cluster 1, H2ah	20					nucleosome assembly	nucleosome|nucleus	DNA binding				0						ACCCGCTCTTCTCGGGCTGGG	0.617													18	62					6.33239e-15	7.69943e-15	1	0
ZNF193	7746	broad.mit.edu	37	6	28200832	28200832	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:28200832T>A	uc003nkq.1	+	4	1176	c.1061T>A	c.(1060-1062)ATT>AAT	p.I354N	ZNF193_uc003nkr.1_Missense_Mutation_p.I354N|ZNF193_uc010jqz.1_Missense_Mutation_p.I405N	NM_006299	NP_006290	O15535	ZN193_HUMAN	zinc finger protein 193	354	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCATTTCTCATTGAACATCAG	0.493													8	20					0	0	0	0
DHX16	8449	broad.mit.edu	37	6	30638996	30638996	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:30638996C>A	uc003nqz.2	-	2	475	c.263G>T	c.(262-264)CGG>CTG	p.R88L	DHX16_uc011dmo.1_Missense_Mutation_p.R28L	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	88					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						CAGCAGGGCCCGGGCCTCTCG	0.547													78	305					3.89792e-41	5.48846e-41	1	0
C6orf25	80739	broad.mit.edu	37	6	31691750	31691750	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:31691750C>T	uc011doc.1	+	2	396	c.396C>T	c.(394-396)CCC>CCT	p.P132P	LY6G6C_uc003nwh.2_5'Flank|LY6G6C_uc010jtd.2_5'Flank|C6orf25_uc003nwk.2_Silent_p.P132P|C6orf25_uc011dod.1_Silent_p.P132P|C6orf25_uc011doe.1_Silent_p.P132P|C6orf25_uc003nwo.2_Silent_p.P132P|C6orf25_uc003nwn.2_Silent_p.P132P	NM_138272	NP_612116	O95866	G6B_HUMAN	G6B protein isoform G6b-B precursor	132	Extracellular (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	heparin binding|receptor activity				0						GCAAGGCCCCCGGGCCTACCC	0.637													30	97					0	0	0	0
B3GALT4	8705	broad.mit.edu	37	6	33246192	33246192	+	Missense_Mutation	SNP	C	G	G	rs141217533	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:33246192C>G	uc003odr.2	+	1	1276	c.996C>G	c.(994-996)CAC>CAG	p.H332Q		NM_003782	NP_003773	O96024	B3GT4_HUMAN	UDP-Gal:betaGlcNAc beta	332	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	ganglioside galactosyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)|breast(1)	2						TGACGTCCCACAGGCTGGACC	0.627													38	140					0	0	0	0
LRFN2	57497	broad.mit.edu	37	6	40399496	40399496	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:40399496G>A	uc003oph.1	-	2	1822	c.1357C>T	c.(1357-1359)CAG>TAG	p.Q453*		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	453	Fibronectin type-III.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					TACTGCAGCTGGTACATCTTC	0.597													20	70					0	0	0	0
RPL7L1	285855	broad.mit.edu	37	6	42851353	42851353	+	Splice_Site	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:42851353G>T	uc003osq.1	+	3	289	c.284_splice	c.e3+1	p.R95_splice	RPL7L1_uc011dux.1_Splice_Site_p.R95_splice|RPL7L1_uc010jxw.1_Splice_Site|RPL7L1_uc003osr.1_Splice_Site|RPL7L1_uc011duy.1_Splice_Site_p.R95_splice|RPL7L1_uc003oss.1_Splice_Site|RPL7L1_uc003ost.2_Splice_Site_p.R95_splice|RPL7L1_uc003osu.2_Splice_Site	NM_198486	NP_940888	Q6DKI1	RL7L_HUMAN	ribosomal protein L7-like 1						translation	large ribosomal subunit	protein binding|structural constituent of ribosome				0	Colorectal(47;0.196)		Colorectal(64;0.00237)|all cancers(41;0.00288)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.088)			GCATCGAAAGGTAAGGAACTG	0.468													15	31					8.60227e-14	1.02808e-13	1	0
LRRC1	55227	broad.mit.edu	37	6	53787436	53787436	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:53787436A>C	uc003pcd.1	+	14	1697	c.1420A>C	c.(1420-1422)ACA>CCA	p.T474P		NM_018214	NP_060684	Q9BTT6	LRRC1_HUMAN	leucine rich repeat containing 1	474						cytoplasm|membrane				ovary(1)	1	Lung NSC(77;0.0147)			BRCA - Breast invasive adenocarcinoma(397;0.0745)		TTTTTAGAGAACACTTCTAAG	0.403													22	75					0	0	0	0
C6orf221	154288	broad.mit.edu	37	6	74073398	74073398	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:74073398C>T	uc003pgt.3	+	3	522	c.469C>T	c.(469-471)CAG>TAG	p.Q157*		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	157										skin(2)	2						GGCCGGGACCCAGCGTTCGGT	0.672													12	48					0	0	0	0
MYO6	4646	broad.mit.edu	37	6	76550980	76550980	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:76550980G>A	uc003pih.1	+	9	980	c.701G>A	c.(700-702)AGG>AAG	p.R234K	MYO6_uc003pig.1_Missense_Mutation_p.R234K|MYO6_uc003pii.1_Missense_Mutation_p.R234K	NM_004999	NP_004990	Q9UM54	MYO6_HUMAN	myosin VI	234	Myosin head-like.				actin filament-based movement|DNA damage response, signal transduction by p53 class mediator|endocytosis|intracellular protein transport|positive regulation of transcription from RNA polymerase II promoter|regulation of secretion|sensory perception of sound|synaptic transmission	cell cortex|clathrin coated vesicle membrane|coated pit|cytosol|DNA-directed RNA polymerase II, holoenzyme|filamentous actin|Golgi apparatus|nuclear membrane|perinuclear region of cytoplasm|ruffle membrane|unconventional myosin complex	actin filament binding|ADP binding|ATP binding|calmodulin binding|minus-end directed microfilament motor activity|protein binding			kidney(1)|pancreas(1)	2		all_hematologic(105;0.189)		BRCA - Breast invasive adenocarcinoma(397;0.223)		GAGAAATCTAGGATCTGTGTT	0.313													10	45					0	0	0	0
KIAA1009	22832	broad.mit.edu	37	6	84872925	84872925	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:84872925A>G	uc010kbp.2	-	19	2547	c.2450T>C	c.(2449-2451)GTA>GCA	p.V817A	KIAA1009_uc003pkj.3_Missense_Mutation_p.V741A|KIAA1009_uc003pki.3_Missense_Mutation_p.V203A	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	817	Potential.				cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		TTCGAAGTCTACTTCAAGAGC	0.328													23	76					0	0	0	0
MDN1	23195	broad.mit.edu	37	6	90411328	90411328	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:90411328G>A	uc003pnn.1	-	55	8492	c.8376C>T	c.(8374-8376)TTC>TTT	p.F2792F		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	2792					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TTATACCAGCGAAGCCACCAG	0.413													16	44					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152647535	152647535	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:152647535G>A	uc010kiw.2	-	79	15791	c.15189C>T	c.(15187-15189)ATC>ATT	p.I5063I	SYNE1_uc003qot.3_Silent_p.I4992I|SYNE1_uc003qou.3_Silent_p.I5063I|SYNE1_uc010kiz.2_Silent_p.I818I	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5063	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CGGTTGGCTTGATGAGTGGGT	0.517										HNSCC(10;0.0054)			21	47					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152711563	152711564	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:152711563_152711564CT>AC	uc010kiw.2	-	53	8630_8631	c.8028_8029AG>GT	c.(8026-8031)GAAGGG>GAGTGG	p.G2677W	SYNE1_uc003qot.3_Missense_Mutation_p.G2684W|SYNE1_uc003qou.3_Missense_Mutation_p.G2677W|SYNE1_uc010kjb.1_Missense_Mutation_p.G2660W	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2677	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTAACTTCCCCTTCACCTTTCA	0.411										HNSCC(10;0.0054)			13	45					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152749342	152749342	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:152749342C>G	uc010kiw.2	-	37	5576	c.4974G>C	c.(4972-4974)CAG>CAC	p.Q1658H	SYNE1_uc003qot.3_Missense_Mutation_p.Q1665H|SYNE1_uc003qou.3_Missense_Mutation_p.Q1658H|SYNE1_uc010kjb.1_Missense_Mutation_p.Q1641H|SYNE1_uc003qow.2_Missense_Mutation_p.Q953H	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	1658	Spectrin 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGCTCACCTCTGCCAGTGGG	0.507										HNSCC(10;0.0054)			74	372					0	0	0	0
RGS17	26575	broad.mit.edu	37	6	153345580	153345580	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:153345580C>G	uc003qpm.2	-	4	417	c.261G>C	c.(259-261)AAG>AAC	p.K87N		NM_012419	NP_036551	Q9UGC6	RGS17_HUMAN	regulator of G-protein signalling 17	87	RGS.				negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			pancreas(1)	1		Ovarian(120;0.126)		OV - Ovarian serous cystadenocarcinoma(155;1.09e-09)|BRCA - Breast invasive adenocarcinoma(81;0.0429)		CCTTCATCATCTTGTCAAAAT	0.473									Lung_Cancer_Familial_Clustering_of				20	45					0	0	0	0
SLC22A2	6582	broad.mit.edu	37	6	160645781	160645781	+	Silent	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:160645781C>A	uc003qtf.2	-	10	1727	c.1557G>T	c.(1555-1557)GGG>GGT	p.G519G	SLC22A2_uc003qte.1_Silent_p.G519G	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	519	Cytoplasmic (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		GCAAAGCTTTCCCTTTAGTTT	0.378													34	107					3.09479e-21	4.0224e-21	1	0
LPAL2	80350	broad.mit.edu	37	6	160908392	160908392	+	RNA	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:160908392T>A	uc003qtj.2	-	4		c.581A>T			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		CCCACCTGACTTTGGGATCCG	0.493													11	40					0	0	0	0
LPAL2	80350	broad.mit.edu	37	6	160908404	160908404	+	RNA	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:160908404T>C	uc003qtj.2	-	4		c.569A>G			LPAL2_uc011efy.1_RNA	NR_028093				Homo sapiens cDNA FLJ43922 fis, clone TESTI4012406.												0		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.214)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)		TGGGATCCGTTGTATAACACC	0.502													13	48					0	0	0	0
C7orf30	115416	broad.mit.edu	37	7	23340489	23340489	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:23340489G>A	uc003swd.1	+	2	320	c.288G>A	c.(286-288)ATG>ATA	p.M96I		NM_138446	NP_612455	Q96EH3	CG030_HUMAN	hypothetical protein LOC115416	96						mitochondrion					0			GBM - Glioblastoma multiforme(13;0.154)			ACATCGATATGATGGTTTCAC	0.408													46	126					0	0	0	0
HOXA6	3203	broad.mit.edu	37	7	27186927	27186927	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:27186927C>A	uc003syo.1	-	1	442	c.442G>T	c.(442-444)GGT>TGT	p.G148C	uc003syp.1_Missense_Mutation_p.P4T	NM_024014	NP_076919	P31267	HXA6_HUMAN	homeobox A6	148						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						TATGTCTTACCCGCGCAGGAG	0.453													21	89					1.36565e-18	1.71142e-18	1	0
Unknown	0	broad.mit.edu	37	7	29771597	29771597	+	Silent	SNP	A	C	C	rs850084	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:29771597A>C	uc003tai.2	+	3	135	c.15A>C	c.(13-15)GCA>GCC	p.A5A						Homo sapiens DPY-19-like 2 pseudogene 3 (DPY19L2P3) pseudogene mRNA, complete sequence.																		CTACAATGGCAAGCGTGAAGC	0.398													12	47					0	0	0	0
EPDR1	54749	broad.mit.edu	37	7	37989907	37989907	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:37989907A>T	uc003tfp.2	+	3	963	c.944A>T	c.(943-945)CAG>CTG	p.Q315L	EPDR1_uc003tfq.2_3'UTR|EPDR1_uc010kxh.2_Missense_Mutation_p.Q134L	NM_017549	NP_060019	Q9UM22	EPDR1_HUMAN	ependymin related protein 1 precursor	195					cell-matrix adhesion	extracellular region	calcium ion binding			upper_aerodigestive_tract(1)	1						TTTGACATCCAGCTGGGTATT	0.493													9	31					0	0	0	0
AEBP1	165	broad.mit.edu	37	7	44151818	44151819	+	Missense_Mutation	DNP	CA	TC	TC			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:44151818_44151819CA>TC	uc003tkb.2	+	17	2420_2421	c.2115_2116CA>TC	c.(2113-2118)CTCAAC>CTTCAC	p.N706H	AEBP1_uc003tkc.3_Missense_Mutation_p.N281H|AEBP1_uc003tkd.2_5'UTR	NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	706	Interaction with PTEN (By similarity).				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						TCCCGGATCTCAACTCTGTGCT	0.579													33	75					0	0	0	0
AUTS2	26053	broad.mit.edu	37	7	69064857	69064857	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:69064857C>A	uc003tvw.3	+	1	961	c.218C>A	c.(217-219)CCG>CAG	p.P73Q	AUTS2_uc003tvv.3_Missense_Mutation_p.P73Q|AUTS2_uc003tvx.3_Missense_Mutation_p.P73Q	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	73										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		CCCAGACCCCCGCGGAGGAAG	0.562													15	36					0.000308642	0.00031906	1	0
CALN1	83698	broad.mit.edu	37	7	71743729	71743729	+	Silent	SNP	C	T	T	rs146054367	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:71743729C>T	uc003twa.3	-	2	587	c.60G>A	c.(58-60)TCG>TCA	p.S20S	CALN1_uc003twb.3_Silent_p.S62S|CALN1_uc003twc.3_Silent_p.S20S	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	20	Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				CAGCAGAGAGCGATCGGTTGA	0.572													17	34					0	0	0	0
SEMA3E	9723	broad.mit.edu	37	7	83014750	83014750	+	Splice_Site	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:83014750C>T	uc003uhy.1	-	16	2202	c.1736_splice	c.e16-1	p.G579_splice		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor						axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				AAAGCATCCCCTACAACAGGA	0.353													32	109					0	0	0	0
GAL3ST4	79690	broad.mit.edu	37	7	99758003	99758003	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:99758003T>C	uc003utt.2	-	3	2026	c.1009A>G	c.(1009-1011)AAG>GAG	p.K337E	C7orf43_uc011kjj.1_5'Flank|C7orf43_uc003utr.2_5'Flank|C7orf43_uc003uts.2_5'Flank|GAL3ST4_uc003utu.2_Missense_Mutation_p.K337E|GAL3ST4_uc010lgq.2_Missense_Mutation_p.K275E	NM_024637	NP_078913	Q96RP7	G3ST4_HUMAN	galactose-3-O-sulfotransferase 4	337	Lumenal (Potential).				cell-cell signaling|oligosaccharide metabolic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi cisterna membrane|integral to membrane|membrane fraction	3'-phosphoadenosine 5'-phosphosulfate binding|galactosylceramide sulfotransferase activity|proteoglycan sulfotransferase activity			ovary(3)	3	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AGGCCCTGCTTATGTCCAGCC	0.597													32	118					0	0	0	0
MUC17	140453	broad.mit.edu	37	7	100675429	100675429	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:100675429C>A	uc003uxp.1	+	3	785	c.732C>A	c.(730-732)AGC>AGA	p.S244R	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	244	Extracellular (Potential).|1.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TTGAAATCAGCACACCTGTGA	0.493													49	185					1.05386e-31	1.45873e-31	1	0
FBXL13	222235	broad.mit.edu	37	7	102572330	102572330	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:102572330T>A	uc003vaq.2	-	9	1202	c.775A>T	c.(775-777)ACA>TCA	p.T259S	FBXL13_uc010liq.1_Missense_Mutation_p.T74S|FBXL13_uc010lir.1_Missense_Mutation_p.T259S|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.T259S|LRRC17_uc003vat.2_Intron|LRRC17_uc003vau.2_Intron	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	259	LRR 2.										0						ATACTCACTGTGAATGTTGGG	0.373													19	54					0	0	0	0
DOCK4	9732	broad.mit.edu	37	7	111395598	111395598	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:111395598G>T	uc003vfx.2	-	41	4631	c.4362C>A	c.(4360-4362)CGC>CGA	p.R1454R	DOCK4_uc011kml.1_Silent_p.R335R|DOCK4_uc011kmm.1_Silent_p.R361R|DOCK4_uc003vfw.2_Silent_p.R904R|DOCK4_uc003vfy.2_Silent_p.R1499R	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1454	DHR-2.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				CTTCAAACCAGCGAGAGATGC	0.443													14	51					2.94398e-08	3.22718e-08	1	0
CFTR	1080	broad.mit.edu	37	7	117171062	117171062	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:117171062G>C	uc003vjd.2	+	4	515	c.383G>C	c.(382-384)TGC>TCC	p.C128S	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	128	Helical; Name=2; (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ATAGGCTTATGCCTTCTCTTT	0.428									Cystic_Fibrosis				15	36					0	0	0	0
KCND2	3751	broad.mit.edu	37	7	119914918	119914918	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:119914918C>A	uc003vjj.1	+	1	1197	c.232C>A	c.(232-234)CCA>ACA	p.P78T		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	78	Cytoplasmic (Potential).|Interaction with KCNIP1 (By similarity).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					TTTCTACCACCCAGAAACTCA	0.542													59	200					8.81991e-31	1.21398e-30	1	0
TNPO3	23534	broad.mit.edu	37	7	128640492	128640492	+	Silent	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:128640492A>T	uc003vol.1	-	7	1376	c.1002T>A	c.(1000-1002)CCT>CCA	p.P334P	TNPO3_uc003vom.1_Silent_p.P268P|TNPO3_uc010lly.1_Silent_p.P334P|TNPO3_uc010llz.1_Silent_p.P334P	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	334					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						CCTCATATTGAGGATGGCCTG	0.398													18	65					0	0	0	0
CPA5	93979	broad.mit.edu	37	7	129986364	129986364	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:129986364C>A	uc010lmd.1	+	4	658	c.38C>A	c.(37-39)CCA>CAA	p.P13Q	CPA5_uc003vps.2_Missense_Mutation_p.P13Q|CPA5_uc003vpt.2_Missense_Mutation_p.P13Q|CPA5_uc010lme.1_Missense_Mutation_p.P13Q|CPA5_uc003vpu.1_Missense_Mutation_p.P13Q	NM_001127441	NP_001120913	Q8WXQ8	CBPA5_HUMAN	carboxypeptidase A5 isoform 1	13					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2	Melanoma(18;0.0435)					CGCCCTGGGCCATCCCCCGTG	0.627													29	148					2.20474e-14	2.67406e-14	1	0
KIAA1549	57670	broad.mit.edu	37	7	138603863	138603863	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:138603863C>T	uc011kql.1	-	2	558	c.509G>A	c.(508-510)CGG>CAG	p.R170Q	KIAA1549_uc003vuk.3_Missense_Mutation_p.R120Q|KIAA1549_uc011kqj.1_Missense_Mutation_p.R170Q	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	170						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						AGAAACCATCCGTGGAGTGGT	0.478			O	BRAF	pilocytic astrocytoma								42	127					0	0	0	0
TAS2R3	50831	broad.mit.edu	37	7	141464364	141464364	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:141464364G>T	uc003vwp.1	+	1	468	c.406G>T	c.(406-408)GGT>TGT	p.G136C		NM_016943	NP_058639	Q9NYW6	TA2R3_HUMAN	taste receptor T2R3	136	Helical; Name=4; (Potential).				sensory perception of taste		taste receptor activity			central_nervous_system(1)	1	Melanoma(164;0.0171)					GATGCTGTTGGGTGCACTGCT	0.483													36	101					1.07121e-22	1.4148e-22	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146997362	146997362	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:146997362G>T	uc003weu.1	+	9	1994	c.1478G>T	c.(1477-1479)GGC>GTC	p.G493V		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	493	Extracellular (Potential).|Laminin G-like 2.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GTTAAAACTGGCGAGAAGTAC	0.373										HNSCC(39;0.1)			21	78					5.35356e-11	6.11479e-11	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147914428	147914428	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:147914428A>T	uc003weu.1	+	19	3575	c.3059A>T	c.(3058-3060)CAG>CTG	p.Q1020L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1020	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TATAACTTTCAGGCACCAGCA	0.498										HNSCC(39;0.1)			44	94					0	0	0	0
ABCB8	11194	broad.mit.edu	37	7	150738275	150738275	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:150738275G>A	uc003wil.3	+	14	1717	c.1624G>A	c.(1624-1626)GAC>AAC	p.D542N	ABCB8_uc010lpw.1_Silent_p.*417*|ABCB8_uc010lpx.2_Missense_Mutation_p.D525N|ABCB8_uc011kvd.1_Missense_Mutation_p.D437N|ABCB8_uc003wim.3_Missense_Mutation_p.D320N|ABCB8_uc003wik.3_Missense_Mutation_p.D525N	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	542	ABC transporter.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GCGCACCCTTGACCCCTCCTG	0.687													21	61					0	0	0	0
SLC4A2	6522	broad.mit.edu	37	7	150767628	150767628	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:150767628G>C	uc003wit.3	+	11	1790	c.1534G>C	c.(1534-1536)GAG>CAG	p.E512Q	SLC4A2_uc011kve.1_Missense_Mutation_p.E503Q|SLC4A2_uc003wiu.3_Missense_Mutation_p.E498Q|SLC4A2_uc003wiv.3_5'Flank	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	512	Cytoplasmic (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAGATTCCTGAGAATGCCGA	0.617													6	19					0	0	0	0
DPP6	1804	broad.mit.edu	37	7	154561180	154561180	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:154561180C>A	uc003wlk.2	+	9	1066	c.937C>A	c.(937-939)CTC>ATC	p.L313I	DPP6_uc003wli.2_Missense_Mutation_p.L249I|DPP6_uc003wlm.2_Missense_Mutation_p.L251I|DPP6_uc011kvq.1_Missense_Mutation_p.L206I	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	313	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TGGCACGAGACTCGCCTACGC	0.522													17	64					1.96292e-10	2.22132e-10	1	0
DPP6	1804	broad.mit.edu	37	7	154679436	154679436	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:154679436G>T	uc003wlk.2	+	23	2425	c.2296G>T	c.(2296-2298)GCA>TCA	p.A766S	DPP6_uc003wli.2_Missense_Mutation_p.A702S|DPP6_uc003wlm.2_Missense_Mutation_p.A704S|DPP6_uc011kvq.1_Missense_Mutation_p.A659S	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	766	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TGACAACAGAGCATACGAGGT	0.577													62	222					1.931e-44	2.72677e-44	1	0
PAXIP1	22976	broad.mit.edu	37	7	154738435	154738435	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:154738435G>T	uc003wlp.2	-	18	3054	c.3011C>A	c.(3010-3012)TCC>TAC	p.S1004Y	LOC100132707_uc011kvr.1_RNA|LOC100132707_uc003wlo.2_RNA|PAXIP1_uc003wlq.1_Missense_Mutation_p.S970Y|PAXIP1_uc011kvs.1_Missense_Mutation_p.S968Y	NM_007349	NP_031375	Q6ZW49	PAXI1_HUMAN	PAX interacting protein 1	1004	Interaction with TP53BP1.|BRCT 6.				DNA damage response, signal transduction by p53 class mediator|DNA recombination|DNA repair|histone H3-K4 methylation|positive regulation of histone acetylation|positive regulation of histone H3-K36 methylation|positive regulation of histone H3-K4 methylation|positive regulation of isotype switching|positive regulation of protein ubiquitination|positive regulation of transcription initiation from RNA polymerase II promoter|response to ionizing radiation|transcription, DNA-dependent	histone methyltransferase complex|nuclear matrix				lung(2)|ovary(1)|breast(1)|pancreas(1)	5	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0296)	UCEC - Uterine corpus endometrioid carcinoma (81;0.178)		TGGCTGCTTGGATAACACCTT	0.473													7	25					0.000157383	0.000163732	1	0
VIPR2	7434	broad.mit.edu	37	7	158896469	158896469	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:158896469G>C	uc003woh.2	-	4	522	c.336C>G	c.(334-336)AGC>AGG	p.S112R	VIPR2_uc010lqx.2_RNA|VIPR2_uc010lqy.2_RNA	NM_003382	NP_003373	P41587	VIPR2_HUMAN	vasoactive intestinal peptide receptor 2	112	Extracellular (Potential).				cell-cell signaling	integral to plasma membrane				lung(1)|central_nervous_system(1)	2	Ovarian(565;0.152)	all_cancers(7;1.13e-11)|all_epithelial(9;0.000545)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.2)|STAD - Stomach adenocarcinoma(7;0.18)		CCTCCGGGTCGCTGTAGCCAC	0.532													20	70					0	0	0	0
C8orf74	203076	broad.mit.edu	37	8	10555226	10555226	+	Missense_Mutation	SNP	G	A	A	rs141492052	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:10555226G>A	uc003wtd.1	+	3	388	c.359G>A	c.(358-360)CGC>CAC	p.R120H	C8orf74_uc003wte.1_RNA	NM_001040032	NP_001035121	Q6P047	CH074_HUMAN	hypothetical protein LOC203076	120											0				COAD - Colon adenocarcinoma(149;0.0811)		ACCTTCATCCGCCACTACAAA	0.597													50	242					0	0	0	0
SOX17	64321	broad.mit.edu	37	8	55372293	55372293	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:55372293C>A	uc003xsb.3	+	2	1187	c.983C>A	c.(982-984)CCG>CAG	p.P328Q		NM_022454	NP_071899	Q9H6I2	SOX17_HUMAN	SRY-box 17	328	Gln/Pro-rich.|Sox C-terminal.				angiogenesis|cardiac cell fate determination|endocardial cell differentiation|endocardium formation|endoderm formation|heart formation|heart looping|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|outflow tract morphogenesis|positive regulation of transcription, DNA-dependent|protein destabilization|protein stabilization|regulation of embryonic development|renal system development|vasculogenesis|Wnt receptor signaling pathway	transcription factor complex	beta-catenin binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			lung(1)	1		Lung NSC(129;0.109)|all_epithelial(80;0.176)|all_lung(136;0.181)	OV - Ovarian serous cystadenocarcinoma(7;1.9e-07)|Epithelial(17;1.7e-05)|all cancers(17;0.000159)			caccaCCCCCCGGGCCCCGGA	0.542													3	2					0.004672	0.00475942	1	0
CHD7	55636	broad.mit.edu	37	8	61749499	61749499	+	Silent	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:61749499A>G	uc003xue.2	+	17	4590	c.4113A>G	c.(4111-4113)TTA>TTG	p.L1371L		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1371	Helicase C-terminal.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CAGGAGGTTTAGGCATTAACC	0.483													44	121					0	0	0	0
RALYL	138046	broad.mit.edu	37	8	85799862	85799862	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:85799862G>C	uc003ycq.3	+	9	1125	c.709G>C	c.(709-711)GAG>CAG	p.E237Q	RALYL_uc003ycr.3_Missense_Mutation_p.E237Q|RALYL_uc003ycs.3_Missense_Mutation_p.E237Q|RALYL_uc010lzy.2_Missense_Mutation_p.E226Q|RALYL_uc003yct.3_Missense_Mutation_p.E250Q|RALYL_uc003ycu.3_Missense_Mutation_p.E164Q|RALYL_uc003ycv.3_Intron	NM_001100392	NP_001093862	Q86SE5	RALYL_HUMAN	RALY RNA binding protein-like isoform 2	237	Potential.						identical protein binding|nucleotide binding|RNA binding			ovary(1)	1						GCAATTGGAAGAGAGTCTAGT	0.483													36	81					0	0	0	0
CNGB3	54714	broad.mit.edu	37	8	87738761	87738761	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:87738761G>T	uc003ydx.2	-	3	382	c.336C>A	c.(334-336)AAC>AAA	p.N112K		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	112	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ATGCTCACCTGTTTGGACCTT	0.453													60	211					2.93687e-30	4.031e-30	1	0
DCAF4L2	138009	broad.mit.edu	37	8	88885094	88885094	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:88885094G>T	uc003ydz.2	-	1	1203	c.1106C>A	c.(1105-1107)TCT>TAT	p.S369Y		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	369										ovary(1)	1						GAGGCGAGAAGAGAAGGCCAC	0.587													16	51					3.45872e-05	3.66041e-05	1	0
VPS13B	157680	broad.mit.edu	37	8	100443889	100443889	+	Silent	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:100443889A>T	uc003yiv.2	+	22	3318	c.3207A>T	c.(3205-3207)CTA>CTT	p.L1069L	VPS13B_uc003yiw.2_Silent_p.L1069L|VPS13B_uc003yiu.1_Silent_p.L1069L|VPS13B_uc003yix.1_Silent_p.L539L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	1069					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			ATCTCACACTACAGGTAAAAT	0.299													13	34					0	0	0	0
CSMD3	114788	broad.mit.edu	37	8	113585814	113585814	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:113585814G>T	uc003ynu.2	-	24	4117	c.3958C>A	c.(3958-3960)CTT>ATT	p.L1320I	CSMD3_uc003yns.2_Missense_Mutation_p.L592I|CSMD3_uc003ynt.2_Missense_Mutation_p.L1280I|CSMD3_uc011lhx.1_Missense_Mutation_p.L1216I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1320	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTACTACTAAGTGTCAGTCCG	0.343										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			49	132					3.37043e-27	4.54962e-27	1	0
NOV	4856	broad.mit.edu	37	8	120435139	120435139	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:120435139T>A	uc003yoq.2	+	5	1062	c.841T>A	c.(841-843)TGC>AGC	p.C281S		NM_002514	NP_002505	P48745	NOV_HUMAN	nephroblastoma overexpressed precursor	281	CTCK.				regulation of cell growth		growth factor activity|insulin-like growth factor binding			ovary(2)|skin(2)|kidney(1)	5	all_cancers(13;3.84e-26)|Lung NSC(37;1.19e-08)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.000507)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTTCAAGAACTGCACCAGCCT	0.488													29	75					0	0	0	0
TAF2	6873	broad.mit.edu	37	8	120831623	120831623	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:120831623C>G	uc003you.2	-	3	532	c.262G>C	c.(262-264)GAC>CAC	p.D88H		NM_003184	NP_003175	Q6P1X5	TAF2_HUMAN	TBP-associated factor 2	88					G2/M transition of mitotic cell cycle|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor TFIID complex|transcription factor TFTC complex	metallopeptidase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			large_intestine(2)|ovary(2)|kidney(1)|skin(1)	6	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AAGGTTGGGTCATTATAAATA	0.318													38	168					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139164215	139164215	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:139164215C>G	uc003yuy.2	-	13	2674	c.2503G>C	c.(2503-2505)GAT>CAT	p.D835H	FAM135B_uc003yux.2_Missense_Mutation_p.D736H|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.D397H|FAM135B_uc003yvb.2_Missense_Mutation_p.D397H	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	835										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTGTCAGCATCTAAAACTATC	0.527										HNSCC(54;0.14)			16	61					0	0	0	0
COL22A1	169044	broad.mit.edu	37	8	139737680	139737680	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:139737680G>T	uc003yvd.2	-	24	2590	c.2143C>A	c.(2143-2145)CCT>ACT	p.P715T	COL22A1_uc011ljo.1_Missense_Mutation_p.P15T	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	715	Collagen-like 5.|Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			GGTCCTGGAGGGCCCTGTAGA	0.577										HNSCC(7;0.00092)			24	66					9.80776e-20	1.24826e-19	1	0
CYP11B1	1584	broad.mit.edu	37	8	143957720	143957720	+	Silent	SNP	C	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:143957720C>T	uc003yxi.2	-	5	898	c.891G>A	c.(889-891)GCG>GCA	p.A297A	CYP11B1_uc010mex.2_5'Flank|CYP11B1_uc003yxh.2_5'UTR|CYP11B1_uc003yxj.2_Silent_p.A297A|CYP11B1_uc010mey.2_Silent_p.A368A	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	297					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	GCGACAGTTCCGCATTCAACA	0.582									Familial_Hyperaldosteronism_type_I				17	55					0	0	0	0
PARP10	84875	broad.mit.edu	37	8	145058724	145058724	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:145058724C>A	uc003zal.3	-	5	1554	c.1446G>T	c.(1444-1446)ATG>ATT	p.M482I	PARP10_uc003zak.3_Missense_Mutation_p.M188I|PARP10_uc011lku.1_Missense_Mutation_p.M494I|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.M482I|PARP10_uc010mfn.1_Missense_Mutation_p.M397I|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	482						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAAAGCCAGTCATATCCGGTC	0.582													23	80					3.8784e-16	4.79904e-16	1	0
ZNF7	7553	broad.mit.edu	37	8	146068370	146068370	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr8:146068370G>A	uc003zeg.3	+	5	2015	c.1878G>A	c.(1876-1878)AAG>AAA	p.K626K	ZNF7_uc010mge.2_Silent_p.K637K|ZNF7_uc011lln.1_Silent_p.K530K|ZNF7_uc003zeh.2_Intron|ZNF7_uc003zek.3_Silent_p.K530K|COMMD5_uc003zel.1_Intron	NM_003416	NP_003407	P17097	ZNF7_HUMAN	zinc finger protein 7	626					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		GCCGTAAAAAGGTTAATACTA	0.433													17	49					0	0	0	0
IL33	90865	broad.mit.edu	37	9	6252955	6252955	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:6252955A>G	uc003zjt.2	+	5	490	c.433A>G	c.(433-435)ATA>GTA	p.I145V	IL33_uc011lmg.1_Intron|IL33_uc011lmh.1_Intron|IL33_uc003zju.1_Missense_Mutation_p.I145V	NM_033439	NP_254274	O95760	IL33_HUMAN	interleukin 33 precursor	145					positive regulation of chemokine secretion|positive regulation of inflammatory response|positive regulation of macrophage activation|positive regulation of transcription from RNA polymerase II promoter	extracellular space	cytokine activity				0		Acute lymphoblastic leukemia(23;0.158)|Prostate(43;0.167)		GBM - Glioblastoma multiforme(50;0.0161)|Lung(218;0.105)		AAGTTATGAGATATATGTTGA	0.264													8	15					0	0	0	0
LINGO2	158038	broad.mit.edu	37	9	27949502	27949502	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:27949502C>G	uc003zqu.1	-	2	1362	c.1168G>C	c.(1168-1170)GAG>CAG	p.E390Q	LINGO2_uc010mjf.1_Missense_Mutation_p.E390Q|LINGO2_uc003zqv.1_Missense_Mutation_p.E390Q	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	390	LRRCT.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		AAAGACCTCTCACGGATGGTG	0.507													18	51					0	0	0	0
TLN1	7094	broad.mit.edu	37	9	35720872	35720872	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:35720872C>G	uc003zxt.2	-	11	1497	c.1143G>C	c.(1141-1143)CAG>CAC	p.Q381H		NM_006289	NP_006280	Q9Y490	TLN1_HUMAN	talin 1	381	FERM.|Interaction with LAYN (By similarity).				axon guidance|cell adhesion|cell-cell junction assembly|cellular component movement|cytoskeletal anchoring at plasma membrane|muscle contraction|platelet activation|platelet degranulation	actin cytoskeleton|centrosome|cytosol|extracellular region|focal adhesion|intracellular membrane-bounded organelle|ruffle membrane	actin binding|insulin receptor binding|LIM domain binding|structural constituent of cytoskeleton|vinculin binding			lung(7)|breast(3)|ovary(2)|central_nervous_system(1)	13	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)			CTTCAGTTGTCTGTACTGAGT	0.493													20	86					0	0	0	0
MELK	9833	broad.mit.edu	37	9	36677296	36677296	+	Nonsense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:36677296A>T	uc003zzn.2	+	18	2056	c.1918A>T	c.(1918-1920)AGA>TGA	p.R640*	MELK_uc011lpm.1_Nonsense_Mutation_p.R509*|MELK_uc011lpn.1_Nonsense_Mutation_p.R599*|MELK_uc011lpo.1_Nonsense_Mutation_p.R446*|MELK_uc010mll.2_Nonsense_Mutation_p.R608*|MELK_uc011lpp.1_Nonsense_Mutation_p.R592*|MELK_uc010mlm.2_Nonsense_Mutation_p.R569*|MELK_uc011lpq.1_Nonsense_Mutation_p.R446*|MELK_uc011lpr.1_Nonsense_Mutation_p.R569*|MELK_uc011lps.1_Nonsense_Mutation_p.R560*	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	640	KA1.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			GGTTTACAAAAGATTAGTGGA	0.458													10	28					0	0	0	0
FRMPD1	22844	broad.mit.edu	37	9	37733514	37733514	+	Missense_Mutation	SNP	G	A	A	rs148144624		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:37733514G>A	uc004aag.1	+	11	1084	c.1040G>A	c.(1039-1041)CGA>CAA	p.R347Q	FRMPD1_uc004aah.1_Missense_Mutation_p.R347Q|FRMPD1_uc011lqm.1_Missense_Mutation_p.R169Q|FRMPD1_uc011lqn.1_Missense_Mutation_p.R216Q	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	347	FERM.					cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		ACTTTACTCCGAAACATGAAA	0.453													23	40					0	0	0	0
IARS	3376	broad.mit.edu	37	9	95018990	95018990	+	Silent	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:95018990G>T	uc004art.1	-	20	2366	c.2109C>A	c.(2107-2109)CTC>CTA	p.L703L	IARS_uc004ars.1_Silent_p.L548L|IARS_uc004aru.3_Silent_p.L703L|IARS_uc010mqr.2_Silent_p.L593L|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	703					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	AGAAGCCAATGAGAGACTGCA	0.433													17	50					8.34094e-07	8.94324e-07	1	0
ANKS6	203286	broad.mit.edu	37	9	101540676	101540676	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:101540676G>A	uc004ayu.2	-	7	1420	c.1399C>T	c.(1399-1401)CGA>TGA	p.R467*	ANKS6_uc004ayt.2_Nonsense_Mutation_p.R166*|ANKS6_uc004ayv.1_5'Flank|ANKS6_uc004ayw.1_Nonsense_Mutation_p.R49*|ANKS6_uc004ayx.1_RNA|ANKS6_uc004ayy.1_RNA	NM_173551	NP_775822	Q68DC2	ANKS6_HUMAN	ankyrin repeat and sterile alpha motif domain	467										ovary(2)	2		Acute lymphoblastic leukemia(62;0.0527)				TTGAGCTTTCGGAACCGATTG	0.587													9	23					0	0	0	0
SVEP1	79987	broad.mit.edu	37	9	113208148	113208148	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:113208148C>A	uc010mtz.2	-	26	4769	c.4432G>T	c.(4432-4434)GAC>TAC	p.D1478Y	SVEP1_uc010mua.1_Missense_Mutation_p.D1478Y	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1478	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AAGGTATTGTCGCTGCCGTTA	0.453													32	117					6.29468e-14	7.54131e-14	1	0
SLC27A4	10999	broad.mit.edu	37	9	131107796	131107796	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:131107796G>A	uc004but.2	+	3	808	c.524G>A	c.(523-525)CGG>CAG	p.R175Q	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	175					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						TCGCGCGCACGGGCCCTTGTC	0.642													14	13					0	0	0	0
SPTAN1	6709	broad.mit.edu	37	9	131365869	131365869	+	Silent	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:131365869G>A	uc004bvl.3	+	28	3740	c.3627G>A	c.(3625-3627)AAG>AAA	p.K1209K	SPTAN1_uc011mbh.1_Silent_p.K1221K|SPTAN1_uc004bvm.3_Silent_p.K1209K|SPTAN1_uc004bvn.3_Silent_p.K1189K	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1209	Spectrin 13.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						ATTCCATCAAGGTAAGAAGCA	0.493													33	129					0	0	0	0
BAT2L1	84726	broad.mit.edu	37	9	134351780	134351780	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:134351780T>G	uc004can.3	+	15	4319	c.4264T>G	c.(4264-4266)TCC>GCC	p.S1422A	BAT2L1_uc010mzj.1_Missense_Mutation_p.S1005A|BAT2L1_uc004cao.3_Missense_Mutation_p.S780A	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1422							protein binding				0						GAGGAGCTTCTCCAGTCAGAG	0.652											OREG0019561	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	4					0	0	0	0
VAV2	7410	broad.mit.edu	37	9	136641200	136641200	+	Silent	SNP	C	A	A	rs150295787		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr9:136641200C>A	uc004ces.2	-	24	2014	c.1968G>T	c.(1966-1968)CCG>CCT	p.P656P	VAV2_uc004cer.2_Silent_p.P646P|VAV2_uc004cet.1_Silent_p.P195P	NM_001134398	NP_001127870	P52735	VAV2_HUMAN	vav 2 guanine nucleotide exchange factor isoform	656					angiogenesis|apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	metal ion binding|Rho guanyl-nucleotide exchange factor activity			central_nervous_system(3)|ovary(2)|lung(2)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(145;3.9e-07)|Epithelial(140;2.07e-06)|all cancers(34;9.39e-06)		GGCTGATGGGCGGCTGGTGGC	0.617													22	70					7.92952e-12	9.20727e-12	1	0
SFRS17A	8227	broad.mit.edu	37	X	1712358	1712358	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:1712358G>T	uc004cqa.2	+	2	199	c.3G>T	c.(1-3)ATG>ATT	p.M1I	SFRS17A_uc010ncx.1_Missense_Mutation_p.M1I|SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_5'Flank	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	1					B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGAGGCTATGGCAGCGGCTA	0.627													42	136					1.57019e-19	1.99325e-19	1	0
FRMPD4	9758	broad.mit.edu	37	X	12736225	12736225	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:12736225T>C	uc004cuz.1	+	16	3786	c.3280T>C	c.(3280-3282)TAT>CAT	p.Y1094H	FRMPD4_uc011mij.1_Missense_Mutation_p.Y1086H	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	1094					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						TCAAAGATGGTATGTGGCCAC	0.493													35	66					0	0	0	0
RBBP7	5931	broad.mit.edu	37	X	16881168	16881168	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:16881168C>G	uc004cxt.2	-	3	575	c.217G>C	c.(217-219)GAT>CAT	p.D73H	RBBP7_uc004cxs.1_Missense_Mutation_p.D117H|RBBP7_uc004cxu.2_Missense_Mutation_p.D73H	NM_002893	NP_002884	Q16576	RBBP7_HUMAN	retinoblastoma binding protein 7	73	WD 1.				cell proliferation|cellular heat acclimation|CenH3-containing nucleosome assembly at centromere|DNA replication|multicellular organismal development|negative regulation of cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	ESC/E(Z) complex|NuRD complex	protein binding			upper_aerodigestive_tract(1)|ovary(1)	2	Hepatocellular(33;0.0997)					TTCTGCTCATCAGACGTATGA	0.418													49	75					0	0	0	0
PHEX	5251	broad.mit.edu	37	X	22132680	22132680	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:22132680C>G	uc004dah.2	+	11	1481	c.1278C>G	c.(1276-1278)TAC>TAG	p.Y426*	PHEX_uc011mjr.1_Nonsense_Mutation_p.Y426*|PHEX_uc011mjs.1_Nonsense_Mutation_p.Y329*	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	426	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TAGATGTGTACTTCCAGGAAG	0.413													25	46					0	0	0	0
IL1RAPL1	11141	broad.mit.edu	37	X	29973758	29973758	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:29973758C>A	uc004dby.2	+	11	2420	c.1912C>A	c.(1912-1914)CTG>ATG	p.L638M		NM_014271	NP_055086	Q9NZN1	IRPL1_HUMAN	interleukin 1 receptor accessory protein-like 1	638	Cytoplasmic (Potential).|Interaction with NCS1.				innate immune response|negative regulation of calcium ion transport via voltage-gated calcium channel activity|negative regulation of exocytosis|regulation of neuron projection development	cytoplasm|integral to membrane|plasma membrane	protein binding|transmembrane receptor activity			ovary(3)|lung(1)|pancreas(1)	5						TACCGGCACCCTGCCTCTTAC	0.502													13	18					3.45872e-05	3.66041e-05	1	0
CXorf59	286464	broad.mit.edu	37	X	36162888	36162888	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:36162888A>T	uc004ddk.1	+	11	1657	c.1471A>T	c.(1471-1473)AGG>TGG	p.R491W		NM_173695	NP_775966	Q8N9S7	CX059_HUMAN	hypothetical protein LOC286464	491						integral to membrane				central_nervous_system(1)	1						cctttggagcaggatgcattt	0													4	6					0	0	0	0
HEPH	9843	broad.mit.edu	37	X	65417622	65417622	+	Silent	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:65417622T>A	uc011moz.1	+	10	1668	c.1608T>A	c.(1606-1608)GCT>GCA	p.A536A	HEPH_uc004dwn.2_Silent_p.A536A|HEPH_uc004dwo.2_Silent_p.A266A|HEPH_uc010nkr.2_Intron|HEPH_uc011mpa.1_Silent_p.A536A	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	533	Extracellular (Potential).|Plastocyanin-like 3.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						AGGATCCTGCTTGTCTCACTT	0.572													19	71					0	0	0	0
MED12	9968	broad.mit.edu	37	X	70342150	70342150	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:70342150C>G	uc004dyy.2	+	8	1401	c.1202C>G	c.(1201-1203)CCG>CGG	p.P401R	MED12_uc011mpq.1_Missense_Mutation_p.P401R|MED12_uc004dyz.2_Missense_Mutation_p.P401R|MED12_uc004dza.2_Missense_Mutation_p.P248R	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	401					androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					CCTATTGCCCCGTCCAACCTG	0.522													47	95					0	0	0	0
MED12	9968	broad.mit.edu	37	X	70357671	70357671	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:70357671G>T	uc004dyy.2	+	41	6121	c.5922G>T	c.(5920-5922)CAG>CAT	p.Q1974H	MED12_uc011mpq.1_Intron|MED12_uc004dyz.2_Missense_Mutation_p.Q1973H|MED12_uc004dza.2_Missense_Mutation_p.Q1824H|MED12_uc010nla.2_Missense_Mutation_p.Q603H	NM_005120	NP_005111	Q93074	MED12_HUMAN	mediator complex subunit 12	1974	Gln-rich.|Interaction with CTNNB1 and GLI3.				androgen receptor signaling pathway|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|protein C-terminus binding|protein domain specific binding|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4	Renal(35;0.156)					AGCCTTACCAGAGCACCCACC	0.582													50	94					1.21353e-23	1.60711e-23	1	0
MIR374A	442919	broad.mit.edu	37	X	73507157	73507157	+	RNA	SNP	T	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:73507157T>A	hsa-mir-374a|MI0000782	-			c.36T>A			NCRNA00182_uc010nlq.1_Intron|NCRNA00182_uc004ebr.1_Intron|MIR545_hsa-mir-545|MI0003516_5'Flank|uc011mqm.1_RNA																	0						ataagtgctataaCACTTATC	0.234													44	158					0	0	0	0
RLIM	51132	broad.mit.edu	37	X	73811417	73811417	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:73811417G>A	uc004ebu.2	-	5	2023	c.1733C>T	c.(1732-1734)ACA>ATA	p.T578I	RLIM_uc004ebw.2_Missense_Mutation_p.T578I	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	578	RING-type.				random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						GTTGCCTTCTGTATATTCTGT	0.408													26	75					0	0	0	0
ATRX	546	broad.mit.edu	37	X	76778862	76778862	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:76778862C>A	uc004ecp.3	-	31	6949	c.6717G>T	c.(6715-6717)GAG>GAT	p.E2239D	ATRX_uc004ecq.3_Missense_Mutation_p.E2201D|ATRX_uc004eco.3_Missense_Mutation_p.E2024D	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	2239					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	TCTGAAGGAGCTCTGCAAGTA	0.368			Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						30	72					4.3181e-19	5.46736e-19	1	0
BRWD3	254065	broad.mit.edu	37	X	79990691	79990691	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:79990691C>G	uc004edt.2	-	10	1183	c.920G>C	c.(919-921)CGC>CCC	p.R307P	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.R136P|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_5'UTR	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	307										ovary(4)	4						TTTCACCGGGCGATCTCTAAA	0.388													17	44					0	0	0	0
BRWD3	254065	broad.mit.edu	37	X	79999663	79999663	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:79999663G>T	uc004edt.2	-	8	944	c.681C>A	c.(679-681)GAC>GAA	p.D227E	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.D56E|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	227	WD 3.									ovary(4)	4						TAACAGCCATGTCAGAAATTT	0.433													32	81					1.22384e-17	1.5259e-17	1	0
PCDH11X	27328	broad.mit.edu	37	X	91132397	91132397	+	Silent	SNP	G	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:91132397G>C	uc004efk.1	+	2	2003	c.1158G>C	c.(1156-1158)ACG>ACC	p.T386T	PCDH11X_uc004efl.1_Silent_p.T386T|PCDH11X_uc004efo.1_Silent_p.T386T|PCDH11X_uc010nmv.1_Silent_p.T386T|PCDH11X_uc004efm.1_Silent_p.T386T|PCDH11X_uc004efn.1_Silent_p.T386T|PCDH11X_uc004efh.1_Silent_p.T386T|PCDH11X_uc004efj.1_Silent_p.T386T	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	386	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						TAACTGTGACGGATAAGGATG	0.413													28	52					0	0	0	0
ARMCX5	64860	broad.mit.edu	37	X	101858708	101858708	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:101858708G>T	uc004ejg.2	+	6	2520	c.1639G>T	c.(1639-1641)GTG>TTG	p.V547L	ARMCX5_uc004ejh.2_Missense_Mutation_p.V547L	NM_022838	NP_073749	Q6P1M9	ARMX5_HUMAN	armadillo repeat containing, X-linked 5	547							binding			ovary(1)	1						TGATCCCGAAGTGAGAGATAA	0.378													36	73					4.32679e-17	5.38104e-17	1	0
CXorf56	63932	broad.mit.edu	37	X	118675341	118675341	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:118675341C>G	uc004erk.1	-	6	602	c.556G>C	c.(556-558)GAA>CAA	p.E186Q	uc004eri.2_5'Flank|CXorf56_uc004erj.1_Missense_Mutation_p.E137Q|CXorf56_uc011mtu.1_Missense_Mutation_p.E172Q	NM_022101	NP_071384	Q9H5V9	CX056_HUMAN	hypothetical protein LOC63932	186	Potential.						protein binding				0						AGCTGTTTTTCAATCACTTTG	0.483													49	80					0	0	0	0
GPC4	2239	broad.mit.edu	37	X	132436980	132436980	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:132436980C>A	uc004exc.1	-	9	1798	c.1586G>T	c.(1585-1587)AGT>ATT	p.S529I	GPC4_uc011mvg.1_Missense_Mutation_p.S459I	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	529					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					GACACCAGCACTGTCGGCTTT	0.517													119	211					6.47804e-62	9.17411e-62	1	0
MCF2	4168	broad.mit.edu	37	X	138714492	138714492	+	Splice_Site	SNP	A	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:138714492A>T	uc004fau.2	-	2	465	c.171_splice	c.e2+1	p.P57_splice	MCF2_uc004fav.2_Splice_Site_p.P57_splice|MCF2_uc011mwl.1_Splice_Site_p.P57_splice|MCF2_uc010nsh.1_Splice_Site_p.P57_splice|MCF2_uc011mwm.1_Splice_Site_p.P57_splice|MCF2_uc011mwn.1_Splice_Site_p.P202_splice|MCF2_uc004faw.2_Splice_Site_p.P117_splice|MCF2_uc011mwo.1_Splice_Site_p.P117_splice	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					ATATACTCTTACTGGTAATTT	0.338													24	40					0	0	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994994	140994994	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:140994994G>A	uc004fbt.2	+	4	2090	c.1804G>A	c.(1804-1806)GGG>AGG	p.G602R	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	602							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCCTCCTCAGGGGGAGGACTC	0.582										HNSCC(15;0.026)			135	249					0	0	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995039	140995039	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:140995039C>G	uc004fbt.2	+	4	2135	c.1849C>G	c.(1849-1851)CAG>GAG	p.Q617E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	617							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GAGTCCTCTTCAGGGGGAGGA	0.572										HNSCC(15;0.026)			106	187					0	0	0	0
SLITRK2	84631	broad.mit.edu	37	X	144905688	144905688	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:144905688C>G	uc004fcd.2	+	5	2735	c.1745C>G	c.(1744-1746)CCA>CGA	p.P582R	SLITRK2_uc010nsp.2_Missense_Mutation_p.P582R|SLITRK2_uc010nso.2_Missense_Mutation_p.P582R|SLITRK2_uc011mwq.1_Missense_Mutation_p.P582R|SLITRK2_uc011mwr.1_Missense_Mutation_p.P582R|SLITRK2_uc011mws.1_Missense_Mutation_p.P582R|SLITRK2_uc004fcg.2_Missense_Mutation_p.P582R|SLITRK2_uc011mwt.1_Missense_Mutation_p.P582R	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	582	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGACAGCCCAAACTTGTCA	0.473													24	31					0	0	0	0
ARHGAP4	393	broad.mit.edu	37	X	153174934	153174934	+	Missense_Mutation	SNP	T	G	G	rs145982906	byFrequency	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:153174934T>G	uc004fjk.1	-	20	2512	c.2470A>C	c.(2470-2472)AGT>CGT	p.S824R	ARHGAP4_uc004fjj.1_Missense_Mutation_p.S175R|ARHGAP4_uc011mzf.1_Missense_Mutation_p.S801R|ARHGAP4_uc004fjl.1_Missense_Mutation_p.S864R|ARHGAP4_uc010nup.1_RNA	NM_001666	NP_001657	P98171	RHG04_HUMAN	Rho GTPase activating protein 4 isoform 2	824					apoptosis|cytoskeleton organization|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|Rho protein signal transduction	cytosol|focal adhesion|nucleus	Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			central_nervous_system(1)	1	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					CCCTCGGGACTGCTCCCAGAC	0.672													11	50					0	0	0	0
F8	2157	broad.mit.edu	37	X	154225261	154225261	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:154225261C>G	uc004fmt.2	-	3	546	c.375G>C	c.(373-375)TGG>TGC	p.W125C	F8_uc011mzx.1_Missense_Mutation_p.W90C	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	125	Plastocyanin-like 1.|F5/8 type A 1.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	CAGAAGCTTTCCAGTAGGATA	0.438													72	132					0	0	0	0
Unknown	0	broad.mit.edu	37	1	158425012	158425012	+	IGR	DEL	C	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:158425012delC								OR10K2 (34356 upstream) : OR10K1 (10340 downstream)																							CAGAGAAGTTCCCTTCACCTC	0.547													---	---	---							
AIM2	9447	broad.mit.edu	37	1	159038376	159038376	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr1:159038376delT	uc001ftj.1	-	3	623	c.378delA	c.(376-378)AAAfs	p.K126fs		NM_004833	NP_004824	O14862	AIM2_HUMAN	absent in melanoma 2	126					cellular response to drug|immune response|interleukin-1 beta secretion	mitochondrion|nucleus				ovary(2)|pancreas(1)	3	all_hematologic(112;0.0429)					GAGGAGAGACTTTTGGTGCAG	0.448													---	---	---							
CTR9	9646	broad.mit.edu	37	11	10772990	10772991	+	Frame_Shift_Ins	INS	-	G	G			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:10772990_10772991insG	uc001mja.2	+	1	180_181	c.31_32insG	c.(31-33)CGGfs	p.R11fs		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	11					histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		GATTCCCCTCCGGGACACTGAC	0.619													---	---	---							
HPS5	11234	broad.mit.edu	37	11	18313218	18313219	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:18313218_18313219insA	uc001mod.1	-	16	2488_2489	c.2210_2211insT	c.(2209-2211)CTGfs	p.L737fs	HPS5_uc001moe.1_Frame_Shift_Ins_p.L623fs|HPS5_uc001mof.1_Frame_Shift_Ins_p.L623fs	NM_181507	NP_852608	Q9UPZ3	HPS5_HUMAN	Hermansky-Pudlak syndrome 5 isoform a	737						cytosol				ovary(1)|pancreas(1)|skin(1)	3						TCAATTCAGCCAGGTCGTTCCG	0.431									Hermansky-Pudlak_syndrome				---	---	---							
PPFIA1	8500	broad.mit.edu	37	11	70194407	70194407	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr11:70194407delC	uc001opo.2	+	16	2242	c.2044delC	c.(2044-2046)CCCfs	p.P682fs	PPFIA1_uc001opn.1_Frame_Shift_Del_p.P682fs|PPFIA1_uc001opp.2_RNA|PPFIA1_uc001opq.1_RNA	NM_003626	NP_003617	Q13136	LIPA1_HUMAN	PTPRF interacting protein alpha 1 isoform b	682					cell-matrix adhesion	cytoplasm	protein binding|signal transducer activity			lung(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(2;1.04e-44)|LUSC - Lung squamous cell carcinoma(11;1.46e-14)|STAD - Stomach adenocarcinoma(18;0.0513)			GAGCTCCATTCCCCCCTACCC	0.557													---	---	---							
Unknown	0	broad.mit.edu	37	12	97639114	97639115	+	IGR	DEL	AC	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:97639114_97639115delAC								NEDD1 (291653 upstream) : RMST (219684 downstream)																							CTACCCCCAAACACTATAACTC	0.421													---	---	---							
TBX3	6926	broad.mit.edu	37	12	115112304	115112304	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr12:115112304delA	uc001tvt.1	-	7	2400	c.1436delT	c.(1435-1437)TTCfs	p.F479fs	TBX3_uc001tvu.1_Frame_Shift_Del_p.F459fs	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	479					anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		GAGCGGCGCGAAGGCCTCCTT	0.781													---	---	---							
OR11H12	440153	broad.mit.edu	37	14	19378395	19378395	+	Frame_Shift_Del	DEL	A	-	-	rs143934872	by1000genomes	TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr14:19378395delA	uc010tkp.1	+	1	802	c.802delA	c.(802-804)AGCfs	p.S268fs		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	268	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ACTGTGCTATAGCTCTCTTAT	0.468													---	---	---							
Unknown	0	broad.mit.edu	37	15	51957744	51957746	+	IGR	DEL	ACC	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr15:51957744_51957746delACC								DMXL2 (42777 upstream) : SCG3 (15804 downstream)																							cttcccaactaccaccaccacca	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	16	89670177	89670178	+	IGR	INS	-	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr16:89670177_89670178insA								CPNE7 (6524 upstream) : DPEP1 (9538 downstream)																							GGCTGGAGGGGAGCCCTGGAGG	0.738													---	---	---							
KRTAP1-1	81851	broad.mit.edu	37	17	39197441	39197441	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr17:39197441delC	uc002hvw.1	-	1	273	c.209delG	c.(208-210)TGCfs	p.C70fs		NM_030967	NP_112229	Q07627	KRA11_HUMAN	keratin associated protein 1-1	70			Missing (in allele KAP1.7).			extracellular region|keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			TGGCTGGCAGCAGCTAGAGTC	0.587													---	---	---							
ZNF528	84436	broad.mit.edu	37	19	52909866	52909866	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:52909866delG	uc002pzh.2	+	6	667	c.241delG	c.(241-243)GGCfs	p.G81fs	ZNF528_uc002pzi.2_5'UTR	NM_032423	NP_115799	Q3MIS6	ZN528_HUMAN	zinc finger protein 528	81					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(134;0.00249)|OV - Ovarian serous cystadenocarcinoma(262;0.00817)		CGATCCAGACGGCAGGGAGTG	0.428													---	---	---							
LILRB2	10288	broad.mit.edu	37	19	54783338	54783338	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:54783338delG	uc002qfb.2	-	5	786	c.520delC	c.(520-522)CGTfs	p.R174fs	LILRA6_uc002qew.1_Intron|LILRB2_uc010eri.2_Frame_Shift_Del_p.R174fs|LILRB2_uc010erj.2_RNA|LILRB2_uc002qfc.2_Frame_Shift_Del_p.R174fs|LILRB2_uc010yet.1_Frame_Shift_Del_p.R58fs|LILRB2_uc010yeu.1_RNA	NM_005874	NP_005865	Q8N423	LIRB2_HUMAN	leukocyte immunoglobulin-like receptor,	174	Extracellular (Potential).|Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|cellular defense response|immune response|regulation of immune response	integral to plasma membrane|membrane fraction	receptor activity			skin(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GACGACCCACGGGCATGGGGC	0.582													---	---	---							
TNNT1	7138	broad.mit.edu	37	19	55658051	55658053	+	In_Frame_Del	DEL	TCC	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr19:55658051_55658053delTCC	uc002qjb.3	-	4	158_160	c.69_71delGGA	c.(67-72)GAGGAA>GAA	p.23_24EE>E	TNNT1_uc002qiz.3_5'UTR|TNNT1_uc002qja.3_5'UTR|TNNT1_uc002qjc.3_In_Frame_Del_p.23_24EE>E|TNNT1_uc002qje.3_In_Frame_Del_p.23_24EE>E|TNNT1_uc002qjd.3_In_Frame_Del_p.23_24EE>E|TNNT1_uc002qjf.2_In_Frame_Del_p.23_24EE>E	NM_003283	NP_003274	P13805	TNNT1_HUMAN	troponin T1, skeletal, slow isoform a	23_24					muscle filament sliding|negative regulation of muscle contraction	cytosol|troponin complex	tropomyosin binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.047)		GACCTCACCTTCCTCCTCCTCCT	0.724													---	---	---							
ST3GAL5	8869	broad.mit.edu	37	2	86073500	86073501	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:86073500_86073501insA	uc002sqq.1	-	5	977_978	c.848_849insT	c.(847-849)CTGfs	p.L283fs	ST3GAL5_uc010fgq.1_Frame_Shift_Ins_p.L155fs|ST3GAL5_uc002sqp.1_Frame_Shift_Ins_p.L260fs	NM_003896	NP_003887	Q9UNP4	SIAT9_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	283	Lumenal (Potential).				ganglioside biosynthetic process|protein glycosylation	integral to Golgi membrane|integral to plasma membrane	lactosylceramide alpha-2,3-sialyltransferase activity|neolactotetraosylceramide alpha-2,3-sialyltransferase activity				0						TAGTGCTTACCAGGGTTTCCTT	0.332													---	---	---							
Unknown	0	broad.mit.edu	37	2	89476110	89476111	+	RNA	INS	-	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:89476110_89476111insC	uc010ytr.1	-	28		c.3370_3371insG			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		CATCACAATATCCCCACTGGAT	0.431													---	---	---							
Unknown	0	broad.mit.edu	37	2	109311337	109311338	+	IGR	INS	-	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:109311337_109311338insT								LIMS1 (10450 upstream) : RANBP2 (24599 downstream)																							GCATTATCGTATTGTCATGAAA	0.416													---	---	---							
FASTKD1	79675	broad.mit.edu	37	2	170419780	170419781	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:170419780_170419781insT	uc002uev.3	-	4	914_915	c.526_527insA	c.(526-528)ATAfs	p.I176fs	FASTKD1_uc002uew.3_RNA|FASTKD1_uc002uex.3_Frame_Shift_Ins_p.I162fs|FASTKD1_uc002uey.2_Frame_Shift_Ins_p.I139fs	NM_024622	NP_078898	Q53R41	FAKD1_HUMAN	FAST kinase domains 1	176					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity			ovary(4)	4						AATATCAGCTATTTTTCCCATT	0.267													---	---	---							
TTN	7273	broad.mit.edu	37	2	179584424	179584424	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179584424delT	uc010zfg.1	-	79	20287	c.20063delA	c.(20062-20064)GACfs	p.D6688fs	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Frame_Shift_Del_p.D3349fs	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7615							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGTTTGCTGTCTGCAGACAA	0.403													---	---	---							
TTN	7273	broad.mit.edu	37	2	179615464	179615464	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr2:179615464delT	uc002unb.2	-	46	11887	c.11663delA	c.(11662-11664)AATfs	p.N3888fs	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTCAACATTTACAAGTGT	0.353													---	---	---							
ZDHHC8	29801	broad.mit.edu	37	22	20119514	20119515	+	Frame_Shift_Ins	INS	-	C	C			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:20119514_20119515insC	uc002zrq.2	+	1	150_151	c.44_45insC	c.(43-45)ATCfs	p.I15fs	ZDHHC8_uc002zrr.1_Frame_Shift_Ins_p.I15fs	NM_013373	NP_037505	Q9ULC8	ZDHC8_HUMAN	zinc finger, DHHC domain containing 8	15	Helical; (Potential).					cytoplasmic vesicle membrane|integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Colorectal(54;0.0993)					GCCAAGTACATCCCGGTGGCCA	0.653													---	---	---							
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45122513	45122513	+	Frame_Shift_Del	DEL	G	-	-	rs28450358		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr22:45122513delG	uc003bfd.2	+	4	593	c.321delG	c.(319-321)GAGfs	p.E107fs	PRR5_uc003bew.1_Frame_Shift_Del_p.E98fs|PRR5_uc003bex.1_Frame_Shift_Del_p.E12fs|PRR5_uc010gzt.1_Frame_Shift_Del_p.E130fs|PRR5_uc010gzu.1_Frame_Shift_Del_p.E71fs|PRR5_uc003bey.1_Frame_Shift_Del_p.E98fs|PRR5_uc003bez.1_Frame_Shift_Del_p.E12fs|PRR5-ARHGAP8_uc003bfc.2_Frame_Shift_Del_p.E107fs|PRR5-ARHGAP8_uc011aqi.1_Frame_Shift_Del_p.E98fs|PRR5-ARHGAP8_uc011aqj.1_Frame_Shift_Del_p.E12fs|PRR5_uc003bfa.1_Frame_Shift_Del_p.R2fs|PRR5_uc003bfb.1_Frame_Shift_Del_p.E107fs|PRR5_uc003bfe.1_RNA|PRR5-ARHGAP8_uc003bfg.1_Frame_Shift_Del_p.E12fs	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GCTTCTATGAGGGTGAGTGTG	0.622													---	---	---							
PRKCD	5580	broad.mit.edu	37	3	53217541	53217541	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:53217541delG	uc003dgl.2	+	9	1084	c.731delG	c.(730-732)TGTfs	p.C244fs	PRKCD_uc003dgm.2_Frame_Shift_Del_p.C244fs|PRKCD_uc010hmt.1_Frame_Shift_Del_p.C16fs	NM_006254	NP_006245	Q05655	KPCD_HUMAN	protein kinase C, delta	244	Phorbol-ester/DAG-type 2.				activation of phospholipase C activity|cellular component disassembly involved in apoptosis|cellular senescence|interferon-gamma-mediated signaling pathway|intracellular signal transduction|mRNA metabolic process|negative regulation of insulin receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of protein binding|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of ceramide biosynthetic process|positive regulation of glucosylceramide catabolic process|positive regulation of protein dephosphorylation|positive regulation of sphingomyelin catabolic process|protein stabilization|regulation of receptor activity|termination of signal transduction	cytosol|endoplasmic reticulum|nucleoplasm	ATP binding|calcium-independent protein kinase C activity|enzyme activator activity|enzyme binding|insulin receptor substrate binding|metal ion binding|protein C-terminus binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9		Ovarian(412;0.0728)		OV - Ovarian serous cystadenocarcinoma(275;3.58e-08)|BRCA - Breast invasive adenocarcinoma(193;0.000142)|Kidney(197;0.00153)|KIRC - Kidney renal clear cell carcinoma(197;0.00173)		CCCACCTTCTGTGACCACTGC	0.602													---	---	---							
SI	6476	broad.mit.edu	37	3	164709191	164709191	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:164709191delA	uc003fei.2	-	44	5120	c.5058delT	c.(5056-5058)CGTfs	p.R1686fs		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1686	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGTGACCACCACGGACATGTA	0.393										HNSCC(35;0.089)			---	---	---							
Unknown	0	broad.mit.edu	37	3	169621379	169621379	+	IGR	DEL	T	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:169621379delT								LRRC31 (33719 upstream) : SAMD7 (8103 downstream)																							GCTTGTAGGCTTTTTACTTCC	0.507													---	---	---							
Unknown	0	broad.mit.edu	37	3	192873921	192873923	+	IGR	DEL	ATG	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr3:192873921_192873923delATG								C3orf59 (237971 upstream) : HRASLS (84995 downstream)																							CAGATGTTACATGATACCTTGTC	0.488													---	---	---							
GK2	2712	broad.mit.edu	37	4	80327926	80327926	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr4:80327926delG	uc003hlu.2	-	1	1447	c.1429delC	c.(1429-1431)CAGfs	p.Q477fs		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	477					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GACAAAGCCTGGGGTTCAAGG	0.483													---	---	---							
MSH3	4437	broad.mit.edu	37	5	80109506	80109506	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr5:80109506delC	uc003kgz.2	+	20	3012	c.2759delC	c.(2758-2760)TCCfs	p.S920fs		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	920					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		CAGATTGGCTCCTATGTTCCT	0.398								MMR					---	---	---							
RNF39	80352	broad.mit.edu	37	6	30043524	30043525	+	Frame_Shift_Ins	INS	-	CC	CC			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:30043524_30043525insCC	uc003npe.2	-	1	104_105	c.42_43insGG	c.(40-45)AAGAGAfs	p.K14fs	RNF39_uc003npd.2_Frame_Shift_Ins_p.K14fs	NM_025236	NP_079512	Q9H2S5	RNF39_HUMAN	ring finger protein 39 isoform 1	14_15						cytoplasm	zinc ion binding				0						ATTGCCTCTCTCTTCAACCAGA	0.579													---	---	---							
BAT4	7918	broad.mit.edu	37	6	31630061	31630062	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:31630061_31630062insT	uc003nvn.2	-	3	1697_1698	c.1052_1053insA	c.(1051-1053)TACfs	p.Y351fs	C6orf47_uc003nvm.1_5'Flank|BAT4_uc003nvo.3_Frame_Shift_Ins_p.Y351fs|BAT4_uc003nvp.3_Frame_Shift_Ins_p.Y351fs|BAT4_uc003nvq.2_Frame_Shift_Ins_p.Y351fs	NM_033177	NP_149417	O95872	GPAN1_HUMAN	HLA-B associated transcript 4	351						intracellular	nucleic acid binding				0						CGAGGTTCATGTAAGTCCTTAG	0.579													---	---	---							
LAMA2	3908	broad.mit.edu	37	6	129636919	129636919	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:129636919delG	uc003qbn.2	+	26	3853	c.3748delG	c.(3748-3750)GGGfs	p.G1250fs	LAMA2_uc003qbo.2_Frame_Shift_Del_p.G1250fs	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1250	Laminin IV type A 2.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GATGGCCTATGGGGGCAAACT	0.383													---	---	---							
FRMD1	79981	broad.mit.edu	37	6	168479649	168479649	+	Frame_Shift_Del	DEL	C	-	-	rs146200905		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr6:168479649delC	uc003qwo.3	-	1	191	c.126delG	c.(124-126)CCGfs	p.P42fs		NM_024919	NP_079195	Q8N878	FRMD1_HUMAN	FERM domain containing 1 isoform 1	42						cytoskeleton	binding			ovary(1)	1		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		TTCCCAGGGTCGGCTCCTGCT	0.667													---	---	---							
SSPO	23145	broad.mit.edu	37	7	149515189	149515189	+	Splice_Site	DEL	A	-	-	rs112122477		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chr7:149515189delA	uc010lpk.2	+	81	11577	c.11577_splice	c.e81+2	p.E3859_splice		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor						cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GACCTCGAGTAACTGCCCCAG	0.562													---	---	---							
EFNB1	1947	broad.mit.edu	37	X	68058522	68058523	+	Frame_Shift_Ins	INS	-	C	C	rs148907346		TCGA-BB-7871-01A-11D-2229-08	TCGA-BB-7871-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	8e13f8a5-5d80-4e34-bffa-54ae808114e7	28a3eef0-d823-4a45-a686-4f8abb8e2647	g.chrX:68058522_68058523insC	uc004dxd.3	+	2	971_972	c.191_192insC	c.(190-192)TGCfs	p.C64fs	EFNB1_uc004dxe.2_Frame_Shift_Ins_p.C64fs	NM_004429	NP_004420	P98172	EFNB1_HUMAN	ephrin-B1 precursor	64	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to plasma membrane|soluble fraction|synapse	ephrin receptor binding				0						GACATCATCTGCCCCCGAGCAG	0.574													---	---	---							
