Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
UBR4	23352	broad.mit.edu	37	1	19439351	19439351	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:19439351G>T	uc001bbi.2	-	78	11472	c.11468C>A	c.(11467-11469)GCT>GAT	p.A3823D	UBR4_uc001bbj.1_3'UTR	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3823					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		TTTGCGCGAAGCAAAGACTTT	0.398000													69	176					4.67498e-28	5.2286e-28	1	0
HSP90B3P	343477	broad.mit.edu	37	1	92109198	92109198	+	Missense_Mutation	SNP	C	T	T	rs61746483		TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:92109198C>T	uc010osx.1	+	3	1225	c.1225C>T	c.(1225-1227)CGG>TGG	p.R409W		NR_003130				SubName: Full=cDNA FLJ58812, highly similar to Endoplasmin (Heat shock protein 90kDa beta member 1);												0						CCAGTACGGACGGTCTGGCAA	0.453000													5	17					0	0	0	0
AGL	178	broad.mit.edu	37	1	100349945	100349945	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:100349945C>T	uc001dsi.1	+	19	2884	c.2484C>T	c.(2482-2484)CCC>CCT	p.P828P	AGL_uc001dsj.1_Silent_p.P828P|AGL_uc001dsk.1_Silent_p.P828P|AGL_uc001dsl.1_Silent_p.P828P|AGL_uc001dsm.1_Silent_p.P812P|AGL_uc001dsn.1_Silent_p.P811P	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	828	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CAAAAGGGCCCAATGAATATA	0.289000													11	41					0	0	0	0
RPRD2	23248	broad.mit.edu	37	1	150337289	150337289	+	Silent	SNP	G	T	T	rs72696841	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:150337289G>T	uc009wlr.2	+	1	300	c.99G>T	c.(97-99)TCG>TCT	p.S33S	RPRD2_uc010pcc.1_Silent_p.S33S|RPRD2_uc001eup.3_Silent_p.S33S	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	33	CID.						protein binding			ovary(1)	1						AATTCCAGTCGGTAACCAACA	0.552000													6	25					0.000157383	0.000165155	1	0
POU2F1	5451	broad.mit.edu	37	1	167385013	167385013	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:167385013C>T	uc001gec.2	+	17	2360	c.2198C>T	c.(2197-2199)GCG>GTG	p.A733V	POU2F1_uc001ged.2_Missense_Mutation_p.A731V|POU2F1_uc001gee.2_Missense_Mutation_p.A733V|POU2F1_uc010plh.1_Missense_Mutation_p.A670V|POU2F1_uc001gef.2_Missense_Mutation_p.A745V|POU2F1_uc001geg.2_Intron	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	733					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						AGCGGGGCTGCGTCCACCACC	0.617000													62	312					0	0	0	0
MFSD4	148808	broad.mit.edu	37	1	205566948	205566948	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:205566948C>T	uc001hcv.3	+	8	1424	c.1338C>T	c.(1336-1338)GGC>GGT	p.G446G	MFSD4_uc010prk.1_Silent_p.G359G|MFSD4_uc010prl.1_Intron|MFSD4_uc010prm.1_Silent_p.G391G|MFSD4_uc009xbn.2_RNA	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	446	Helical; (Potential).				transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			CAGGAGTTGGCGAGATGGTGC	0.522000													36	178					0	0	0	0
CD34	947	broad.mit.edu	37	1	208073192	208073192	+	Missense_Mutation	SNP	C	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:208073192C>A	uc001hgw.1	-	2	494	c.236G>T	c.(235-237)GGC>GTC	p.G79V	CD34_uc001hgx.1_Missense_Mutation_p.G79V|CD34_uc010psj.1_Missense_Mutation_p.A29S	NM_001025109	NP_001020280	P28906	CD34_HUMAN	CD34 antigen isoform a	79	Extracellular (Potential).				cell-cell adhesion|leukocyte migration|regulation of immune response	integral to membrane	carbohydrate binding			ovary(1)	1						GGCCTCATTGCCATGTTGAGA	0.438000													31	126					2.32173e-10	2.49807e-10	1	0
HLX	3142	broad.mit.edu	37	1	221053233	221053233	+	Missense_Mutation	SNP	T	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:221053233T>A	uc001hmv.3	+	1	491	c.34T>A	c.(34-36)TCC>ACC	p.S12T		NM_021958	NP_068777	Q14774	HLX_HUMAN	H2.0-like homeobox	12					cell differentiation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				GBM - Glioblastoma multiforme(131;0.00914)		CTTCTACGCCTCCAACTTCAG	0.721000													7	14					0	0	0	0
Unknown	0	broad.mit.edu	37	1	227618248	227618248	+	RNA	SNP	G	A	A	rs41304006	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:227618248G>A	uc001hqv.2	+	4		c.1483G>A								Homo sapiens cDNA clone IMAGE:5270051.																		GATCCCTGAAGAGTTCCAGCA	0.502000													15	35					0	0	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090257	238090257	+	RNA	SNP	A	G	G	rs548164	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:238090257A>G	uc010pyc.1	+	12		c.1763A>G				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						GCACAAGAGCATGATGGTGGG	0.597000													9	20					0	0	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090514	238090514	+	RNA	SNP	T	A	A	rs545540	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:238090514T>A	uc010pyc.1	+	12		c.2020T>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						GACCTTCAACTCCCCGGCCAT	0.607000													14	47					0	0	0	0
PLD5	200150	broad.mit.edu	37	1	242277314	242277314	+	Silent	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:242277314G>C	uc001hzn.1	-	7	1075	c.948C>G	c.(946-948)CTC>CTG	p.L316L	PLD5_uc001hzl.3_Silent_p.L254L|PLD5_uc001hzm.3_Silent_p.L106L|PLD5_uc001hzo.1_Silent_p.L224L			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	316						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TAGGGCAAAAGAGTTTTGGAG	0.403000													14	70					0	0	0	0
OR2M3	127062	broad.mit.edu	37	1	248367188	248367188	+	Missense_Mutation	SNP	G	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:248367188G>T	uc010pzg.1	+	1	819	c.819G>T	c.(817-819)ATG>ATT	p.M273I		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	273	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGGACAAGATGGTGTCTGTAT	0.493000													37	168					2.48057e-37	2.81131e-37	1	0
ALDH3B1	221	broad.mit.edu	37	11	67787207	67787207	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr11:67787207C>T	uc010rpy.1	+	7	620	c.504C>T	c.(502-504)GGC>GGT	p.G168G	ALDH3B1_uc001omz.2_Silent_p.G168G|ALDH3B1_uc001ona.2_Silent_p.G131G|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	168					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	TGGTGCTGGGCGGGCCCCAGG	0.667000													41	151					0	0	0	0
SCN3B	55800	broad.mit.edu	37	11	123513320	123513320	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr11:123513320C>T	uc001pza.1	-	4	686	c.279G>A	c.(277-279)CAG>CAA	p.Q93Q	SCN3B_uc001pzb.1_Silent_p.Q93Q	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	93	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		TGCCATTCCACTGCAGGCGCC	0.572000													14	58					0	0	0	0
A2ML1	144568	broad.mit.edu	37	12	8994121	8994121	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr12:8994121G>A	uc001quz.3	+	11	1335	c.1237G>A	c.(1237-1239)GTT>ATT	p.V413I	A2ML1_uc001qva.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	257						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TGGGACAGACGTTTCTCTGGA	0.478000													9	31					0	0	0	0
ZIC2	7546	broad.mit.edu	37	13	100635305	100635305	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr13:100635305C>T	uc001von.2	+	1	987	c.987C>T	c.(985-987)GGC>GGT	p.G329G		NM_007129	NP_009060	O95409	ZIC2_HUMAN	zinc finger protein of the cerebellum 2	329					brain development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|visual perception	cytoplasm|nucleus	chromatin DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TGCACACAGGCGAGAAACCCT	0.607000													57	85					0	0	0	0
CPSF2	53981	broad.mit.edu	37	14	92597374	92597374	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr14:92597374G>A	uc001yah.1	+	3	283	c.46G>A	c.(46-48)GAA>AAA	p.E16K		NM_017437	NP_059133	Q9P2I0	CPSF2_HUMAN	cleavage and polyadenylation specific factor 2	16					histone mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	hydrolase activity|protein binding|RNA binding			ovary(2)	2		all_cancers(154;0.0766)		COAD - Colon adenocarcinoma(157;0.222)		GGTCCAAGAAGAATCTGCCCT	0.373000													17	78					0	0	0	0
RTF1	23168	broad.mit.edu	37	15	41767764	41767764	+	Nonsense_Mutation	SNP	C	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr15:41767764C>G	uc001zny.2	+	10	1340	c.1328C>G	c.(1327-1329)TCA>TGA	p.S443*		NM_015138	NP_055953	Q92541	RTF1_HUMAN	Paf1/RNA polymerase II complex component	443	Plus3.				histone modification|regulation of transcription, DNA-dependent|transcription initiation, DNA-dependent	nucleoplasm	protein binding|single-stranded DNA binding			ovary(2)	2		all_cancers(109;1.79e-19)|all_epithelial(112;8.18e-17)|Lung NSC(122;3.16e-11)|all_lung(180;8.14e-10)|Melanoma(134;0.0179)|Colorectal(260;0.0946)|Ovarian(310;0.143)		OV - Ovarian serous cystadenocarcinoma(18;1.15e-16)|GBM - Glioblastoma multiforme(113;1.81e-06)|BRCA - Breast invasive adenocarcinoma(123;0.119)		GAGTTTGTCTCAAACCAAGAA	0.423000													14	69					0	0	0	0
MPI	4351	broad.mit.edu	37	15	75185035	75185035	+	Nonsense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr15:75185035C>T	uc002azc.1	+	4	384	c.379C>T	c.(379-381)CAG>TAG	p.Q127*	MPI_uc010ulv.1_Nonsense_Mutation_p.Q127*|MPI_uc010ulw.1_Nonsense_Mutation_p.Q77*|MPI_uc002azd.1_Nonsense_Mutation_p.Q127*|MPI_uc010ulx.1_Nonsense_Mutation_p.Q77*|MPI_uc002aze.1_Nonsense_Mutation_p.Q127*	NM_002435	NP_002426	P34949	MPI_HUMAN	mannose-6- phosphate isomerase	127					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	mannose-6-phosphate isomerase activity|zinc ion binding			ovary(2)	2						CCAGGCTCCGCAGCACTACCC	0.602000													13	53					0	0	0	0
MCTP2	55784	broad.mit.edu	37	15	94841555	94841555	+	Missense_Mutation	SNP	A	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr15:94841555A>C	uc002btj.2	+	1	126	c.61A>C	c.(61-63)ATC>CTC	p.I21L	MCTP2_uc010urg.1_Missense_Mutation_p.I21L|MCTP2_uc002bti.2_Missense_Mutation_p.I21L|MCTP2_uc010boj.2_5'UTR|MCTP2_uc010bok.2_Missense_Mutation_p.I21L|MCTP2_uc002btg.3_Missense_Mutation_p.I21L|MCTP2_uc002bth.3_Missense_Mutation_p.I21L	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	21					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			GCCATTGTTGATCAACTTGAG	0.502000													13	48					0	0	0	0
OR4F6	390648	broad.mit.edu	37	15	102346083	102346083	+	Missense_Mutation	SNP	G	A	A	rs61746768	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr15:102346083G>A	uc010utr.1	+	1	161	c.161G>A	c.(160-162)CGT>CAT	p.R54H		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			TCTGACCCTCGTTTACAGTCC	0.468000													60	327					0	0	0	0
GP1BA	2811	broad.mit.edu	37	17	4836510	4836510	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr17:4836510C>T	uc010vsq.1	+	2	686	c.611C>T	c.(610-612)CCA>CTA	p.P204L	uc002fzn.1_RNA	NM_000173	NP_000164	P07359	GP1BA_HUMAN	platelet glycoprotein Ib alpha polypeptide	204											0						TATACAATACCAAAGGGCTTT	0.527000													9	35					0	0	0	0
SPACA3	124912	broad.mit.edu	37	17	31322641	31322641	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr17:31322641C>T	uc002hhs.1	+	2	324	c.249C>T	c.(247-249)CCC>CCT	p.P83P	SPACA3_uc010cte.1_RNA	NM_173847	NP_776246	Q8IXA5	SACA3_HUMAN	sperm acrosome associated 3	83	Helical; Signal-anchor for type II membrane protein; (Potential).				cell wall macromolecule catabolic process|defense response to Gram-positive bacterium|monocyte activation|peptidoglycan catabolic process|positive regulation of macrophage activation|positive regulation of phagocytosis|response to virus	acrosomal membrane|extracellular region|integral to membrane|lysosome	bacterial cell surface binding|lysozyme activity|protein binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.193)			GCCTGCTACCCTCCAGTGAGG	0.612000													15	74					0	0	0	0
EMILIN2	84034	broad.mit.edu	37	18	2890969	2890969	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr18:2890969G>C	uc002kln.2	+	4	1003	c.844G>C	c.(844-846)GAG>CAG	p.E282Q		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	282	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		CAAGCTGGAAGAGCTGGATGG	0.493000													13	45					0	0	0	0
RBBP8	5932	broad.mit.edu	37	18	20548852	20548852	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr18:20548852A>T	uc002ktw.2	+	5	663	c.332A>T	c.(331-333)CAG>CTG	p.Q111L	RBBP8_uc002kty.2_Missense_Mutation_p.Q111L|RBBP8_uc002ktz.2_Missense_Mutation_p.Q111L|RBBP8_uc002kua.2_Missense_Mutation_p.Q111L|RBBP8_uc002ktx.1_Missense_Mutation_p.Q111L	NM_002894	NP_002885	Q99708	COM1_HUMAN	retinoblastoma binding protein 8 isoform a	111	Potential.				cell cycle checkpoint|DNA double-strand break processing involved in repair via single-strand annealing|meiosis|regulation of transcription from RNA polymerase II promoter	nucleus	damaged DNA binding|protein binding|single-stranded DNA specific endodeoxyribonuclease activity			ovary(1)|lung(1)|skin(1)	3	all_cancers(21;4.34e-05)|all_epithelial(16;8.3e-07)|Lung NSC(20;0.0107)|Colorectal(14;0.0202)|all_lung(20;0.0291)|Ovarian(20;0.19)		OV - Ovarian serous cystadenocarcinoma(1;0.00196)			AATATCCGGCAGCAGAATCTT	0.318000								Direct_reversal_of_damage|Homologous_recombination					12	32					0	0	0	0
NLRP9	338321	broad.mit.edu	37	19	56243935	56243935	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr19:56243935G>C	uc002qly.2	-	2	1290	c.1262C>G	c.(1261-1263)TCT>TGT	p.S421C		NM_176820	NP_789790	Q7RTR0	NALP9_HUMAN	NLR family, pyrin domain containing 9	421	NACHT.					cytoplasm	ATP binding			skin(4)|ovary(2)|breast(1)	7		Colorectal(82;0.000133)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.123)		CTCAGACTCAGATAACCCATT	0.498000													41	85					0	0	0	0
RGPD5	84220	broad.mit.edu	37	2	113191010	113191010	+	Missense_Mutation	SNP	A	C	C	rs13021601		TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr2:113191010A>C	uc002ths.1	-	1	98	c.21T>G	c.(19-21)GAT>GAG	p.D7E	RGPD8_uc010fkk.1_Intron|RGPD5_uc010yxm.1_Missense_Mutation_p.D7E	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	7					intracellular transport	cytoplasm	binding				0						ACCGCTCCACATCGGCCTTGC	0.632000													9	45					0	0	0	0
C1QL2	165257	broad.mit.edu	37	2	119914519	119914519	+	Silent	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr2:119914519G>A	uc002tlo.2	-	2	1349	c.723C>T	c.(721-723)AAC>AAT	p.N241N		NM_182528	NP_872334	Q7Z5L3	C1QL2_HUMAN	complement component 1, q subcomponent-like 2	241	C1q.					collagen				pancreas(1)	1						CGTAGTCGTAGTTCTGGTCGG	0.617000										HNSCC(49;0.14)			59	308					0	0	0	0
ANO7	50636	broad.mit.edu	37	2	242154318	242154318	+	Splice_Site	SNP	G	A	A	rs148954456	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr2:242154318G>A	uc002wax.2	+	18	2091	c.1988_splice	c.e18+1	p.P663_splice		NM_001001891	NP_001001891	Q6IWH7	ANO7_HUMAN	transmembrane protein 16G isoform NGEP long							cell junction|chloride channel complex|cytosol	chloride channel activity			pancreas(2)|central_nervous_system(1)	3						TCCTCATCCCGTGAGTCCCCC	0.642000													9	39					0	0	0	0
HCK	3055	broad.mit.edu	37	20	30662496	30662496	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr20:30662496G>A	uc002wxh.2	+	5	571	c.400G>A	c.(400-402)GCC>ACC	p.A134T	HCK_uc010gdy.2_Missense_Mutation_p.A113T|HCK_uc002wxi.2_Missense_Mutation_p.A112T	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	134	SH3.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CAACTATGTCGCCCGCGTTGA	0.468000													89	185					0	0	0	0
NPTXR	23467	broad.mit.edu	37	22	39222627	39222627	+	Missense_Mutation	SNP	G	A	A	rs34637063	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr22:39222627G>A	uc003awk.2	-	3	1130	c.976C>T	c.(976-978)CGG>TGG	p.R326W		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	326	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					GACCTGGACCGCAGCCACATG	0.632000													21	103					0	0	0	0
SCUBE1	80274	broad.mit.edu	37	22	43614380	43614380	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr22:43614380C>T	uc003bdt.1	-	15	1860	c.1772G>A	c.(1771-1773)CGG>CAG	p.R591Q		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	591					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				GAACTGCTGCCGGCCGATGGA	0.652000													43	235					0	0	0	0
EPHA3	2042	broad.mit.edu	37	3	89448519	89448519	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr3:89448519A>T	uc003dqy.2	+	7	1708	c.1483A>T	c.(1483-1485)ACC>TCC	p.T495S	EPHA3_uc003dqx.1_Missense_Mutation_p.T495S|EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	495	Extracellular (Potential).|Fibronectin type-III 2.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		CACAAATGTTACCATCAGTAG	0.413000										TSP Lung(6;0.00050)			14	36					0	0	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125833427	125833427	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr3:125833427G>C	uc003eim.1	-	18	2245	c.2055C>G	c.(2053-2055)GAC>GAG	p.D685E	ALDH1L1_uc010hse.1_Intron|ALDH1L1_uc011bki.1_Missense_Mutation_p.D584E|ALDH1L1_uc003ein.1_Missense_Mutation_p.D220E	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	685	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TGAGGTCACAGTCAGCAAAGA	0.612000													26	129					0	0	0	0
LOC729375	729375	broad.mit.edu	37	3	129821650	129821650	+	RNA	SNP	G	A	A	rs56088005	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr3:129821650G>A	uc003ene.2	-	2		c.266C>T			LOC729375_uc011ble.1_RNA					Homo sapiens cDNA FLJ42457 fis, clone BRACE2018700.												0						GGTTGCGGACGGTAAAGGCCA	0.667000													32	140					0	0	0	0
HLTF	6596	broad.mit.edu	37	3	148760013	148760013	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr3:148760013G>A	uc003ewq.1	-	19	2355	c.2137C>T	c.(2137-2139)CGG>TGG	p.R713W	HLTF_uc003ewr.1_Missense_Mutation_p.R713W|HLTF_uc003ews.1_Missense_Mutation_p.R712W|HLTF_uc010hve.1_Missense_Mutation_p.R712W	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	713					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			CAAATTTGCCGCAGTCTAAGC	0.388000													26	44					0	0	0	0
FGFR3	2261	broad.mit.edu	37	4	1807820	1807820	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:1807820G>A	uc003gdr.3	+	14	2135	c.1879G>A	c.(1879-1881)GAG>AAG	p.E627K	FGFR3_uc003gdu.2_Missense_Mutation_p.E629K|FGFR3_uc003gds.3_Missense_Mutation_p.E515K|FGFR3_uc003gdq.3_Missense_Mutation_p.E628K	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	627	Protein kinase.|Cytoplasmic (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.E627D(1)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	GCTGGTGACCGAGGACAACGT	0.647000		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				7	27					0	0	0	0
RASSF6	166824	broad.mit.edu	37	4	74464410	74464410	+	Missense_Mutation	SNP	T	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:74464410T>C	uc003hhd.1	-	3	310	c.187A>G	c.(187-189)ACC>GCC	p.T63A	RASSF6_uc003hhc.1_Missense_Mutation_p.T31A|RASSF6_uc010iik.1_Missense_Mutation_p.T31A|RASSF6_uc010iil.1_Intron	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	63					apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			ATGTTATAGGTCTTCAATAAA	0.269000													3	3					0	0	0	0
FAT1	2195	broad.mit.edu	37	4	187539651	187539651	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:187539651C>A	uc003izf.2	-	10	8277	c.8089G>T	c.(8089-8091)GAA>TAA	p.E2697*		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	2697	Extracellular (Potential).|Cadherin 24.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGCTGCATTTCCGGTGGAAGG	0.393000										HNSCC(5;0.00058)			27	69					5.45727e-16	6.02426e-16	1	0
CDH12	1010	broad.mit.edu	37	5	21854831	21854831	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr5:21854831C>T	uc010iuc.2	-	4	1053	c.595G>A	c.(595-597)GTT>ATT	p.V199I	CDH12_uc011cno.1_Intron|CDH12_uc003jgk.2_Missense_Mutation_p.V199I	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	199	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						ATGCTGTAAACGACTCTGGCA	0.403000										HNSCC(59;0.17)			13	49					0	0	0	0
PCDHB11	56125	broad.mit.edu	37	5	140580943	140580943	+	Silent	SNP	C	T	T	rs141725405	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr5:140580943C>T	uc003liy.2	+	1	1596	c.1596C>T	c.(1594-1596)GGC>GGT	p.G532G	PCDHB11_uc011daj.1_Silent_p.G167G	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	532	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TCCGCGTGGGCGCCACAGACC	0.677000													31	96					0	0	0	0
FBXO38	81545	broad.mit.edu	37	5	147793811	147793811	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr5:147793811C>G	uc003lpf.1	+	10	1326	c.1206C>G	c.(1204-1206)ATC>ATG	p.I402M	FBXO38_uc003lpg.1_Missense_Mutation_p.I402M|FBXO38_uc003lph.2_Missense_Mutation_p.I402M	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	402						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTTCCTGTATCAAATATCTGG	0.368000													22	84					0	0	0	0
AIM1	202	broad.mit.edu	37	6	106968417	106968417	+	Missense_Mutation	SNP	A	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr6:106968417A>G	uc003prh.2	+	2	2597	c.2110A>G	c.(2110-2112)ATA>GTA	p.I704V		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	704							sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		CACTGAAATTATAAAACAGAT	0.423000													17	53					0	0	0	0
MEOX2	4223	broad.mit.edu	37	7	15652168	15652168	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:15652168C>T	uc003stc.2	-	3	1040	c.759G>A	c.(757-759)GCG>GCA	p.A253A	MEOX2_uc011jxw.1_Silent_p.A253A	NM_005924	NP_005915	P50222	MEOX2_HUMAN	mesenchyme homeobox 2	253					blood circulation|multicellular organismal development	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.0822)		TTTCCCGAGCCGCAGCTCCTT	0.507000													19	83					0	0	0	0
CALCR	799	broad.mit.edu	37	7	93055794	93055794	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:93055794C>T	uc003umv.1	-	15	1662	c.1401G>A	c.(1399-1401)GCG>GCA	p.A467A	CALCR_uc011kia.1_Silent_p.A247A|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.A433A|CALCR_uc003umw.2_Silent_p.A433A	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	449	Poly-Ala.|Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding	p.A433A(1)		ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	CGCCAGCCTCCGCAGCAGCGG	0.582000													26	121					0	0	0	0
AZGP1	563	broad.mit.edu	37	7	99564900	99564900	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:99564900G>A	uc003ush.2	-	4	667	c.623C>T	c.(622-624)TCT>TTT	p.S208F		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	208	Ig-like C1-type.				antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					GACCACCACAGAGGGAGGATC	0.577000													9	30					0	0	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37756684	37756684	+	Silent	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr8:37756684C>T	uc003xkm.1	-	1	320	c.276G>A	c.(274-276)GTG>GTA	p.V92V	RAB11FIP1_uc010lvz.1_Intron|RAB11FIP1_uc003xkn.1_Silent_p.V92V	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	92	C2.				protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			CGCGGTGCAGCACGGTGAGCT	0.741000													3	6					0	0	0	0
ANK1	286	broad.mit.edu	37	8	41551549	41551549	+	Silent	SNP	G	A	A	rs117516263	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr8:41551549G>A	uc003xok.2	-	29	3483	c.3399C>T	c.(3397-3399)ACC>ACT	p.T1133T	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.T449T|ANK1_uc003xoi.2_Silent_p.T1133T|ANK1_uc003xoj.2_Silent_p.T1133T|ANK1_uc003xol.2_Silent_p.T1133T|ANK1_uc003xom.2_Silent_p.T1174T	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1133					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GGGGCTCCACGGTGACAATGG	0.632000													27	66					0	0	0	0
FBXO43	286151	broad.mit.edu	37	8	101153496	101153496	+	Nonsense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr8:101153496G>C	uc003yjd.2	-	2	1699	c.986C>G	c.(985-987)TCA>TGA	p.S329*	FBXO43_uc003yje.2_Nonsense_Mutation_p.S295*|FBXO43_uc010mbp.1_Nonsense_Mutation_p.S329*	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	329					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			TTCAGGCGTTGAAATACTGCC	0.408000													16	83					0	0	0	0
FER1L6	654463	broad.mit.edu	37	8	125082795	125082795	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr8:125082795G>C	uc003yqw.2	+	30	4128	c.3922G>C	c.(3922-3924)GAT>CAT	p.D1308H	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1308	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GTCTACGGAAGATGACCATGG	0.403000													22	122					0	0	0	0
ABCA1	19	broad.mit.edu	37	9	107602634	107602634	+	Missense_Mutation	SNP	T	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr9:107602634T>G	uc004bcl.2	-	9	1293	c.980A>C	c.(979-981)GAC>GCC	p.D327A		NM_005502	NP_005493	O95477	ABCA1_HUMAN	ATP-binding cassette, sub-family A member 1	327	Extracellular.				Cdc42 protein signal transduction|cellular lipid metabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|endosome transport|G-protein coupled receptor protein signaling pathway|high-density lipoprotein particle assembly|interleukin-1 beta secretion|intracellular cholesterol transport|lysosome organization|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|platelet dense granule organization|positive regulation of cAMP biosynthetic process|reverse cholesterol transport	integral to plasma membrane|membrane fraction|membrane raft|phagocytic vesicle	anion transmembrane transporter activity|apolipoprotein A-I receptor activity|ATP binding|ATPase activity|cholesterol transporter activity|phospholipid transporter activity|small GTPase binding|syntaxin-13 binding			large_intestine(4)|lung(4)|ovary(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	17				OV - Ovarian serous cystadenocarcinoma(323;0.023)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GTAGTTGTTGTCCTCATACCA	0.532000													26	64					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139407990	139407990	+	Splice_Site	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr9:139407990C>T	uc004chz.2	-	14	2208	c.2208_splice	c.e14-1	p.G736_splice	NOTCH1_uc004cia.1_5'UTR	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein						aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GCACTTGTACCTGCAAGGGGG	0.627000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			12	42					0	0	0	0
EDA	1896	broad.mit.edu	37	X	68836326	68836326	+	Missense_Mutation	SNP	G	C	C			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:68836326G>C	uc004dxs.2	+	1	416	c.174G>C	c.(172-174)TTG>TTC	p.L58F	EDA_uc004dxr.2_Missense_Mutation_p.L58F|EDA_uc011mpj.1_Missense_Mutation_p.L58F|EDA_uc004dxn.1_Missense_Mutation_p.L58F|EDA_uc004dxm.1_Missense_Mutation_p.L58F|EDA_uc004dxp.1_Missense_Mutation_p.L58F|EDA_uc004dxq.1_Missense_Mutation_p.L58F|EDA_uc004dxl.1_Missense_Mutation_p.L58F	NM_001399	NP_001390	Q92838	EDA_HUMAN	ectodysplasin A isoform EDA-A1	58	Helical; Signal-anchor for type II membrane protein; (Potential).				cell differentiation|ectoderm development|immune response|positive regulation of NF-kappaB transcription factor activity|signal transduction	collagen|cytoskeleton|membrane fraction	tumor necrosis factor receptor binding			ovary(2)|large_intestine(1)	3						TGCTGACGTTGTGCTGCTACC	0.692000													12	53					0	0	0	0
TBX22	50945	broad.mit.edu	37	X	79281198	79281198	+	Silent	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:79281198G>A	uc010nmg.1	+	5	689	c.555G>A	c.(553-555)TCG>TCA	p.S185S	TBX22_uc004edi.1_Silent_p.S65S|TBX22_uc004edj.1_Silent_p.S185S	NM_001109878	NP_001103348	Q9Y458	TBX22_HUMAN	T-box 22 isoform 1	185	T-box.				multicellular organismal development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(7)|large_intestine(3)|central_nervous_system(2)|breast(1)|skin(1)|ovary(1)	15						CACCCTGCTCGGGAGAGACCT	0.493000													9	22					0	0	0	0
PABPC5	140886	broad.mit.edu	37	X	90690749	90690749	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:90690749C>T	uc004efg.2	+	2	613	c.173C>T	c.(172-174)CCC>CTC	p.P58L	PABPC5_uc004eff.1_Intron	NM_080832	NP_543022	Q96DU9	PABP5_HUMAN	poly(A) binding protein, cytoplasmic 5	58	RRM 1.					cytoplasm	nucleotide binding|RNA binding			ovary(1)|lung(1)|pancreas(1)	3						ACCCGCAGCCCCCTGGGCTAT	0.532000													5	8					0	0	0	0
GUCY2F	2986	broad.mit.edu	37	X	108696910	108696910	+	Missense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:108696910G>A	uc004eod.3	-	4	1487	c.1211C>T	c.(1210-1212)TCA>TTA	p.S404L	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	404	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						TACATATTCTGAAATTCCATT	0.478000													10	37					0	0	0	0
CHRDL1	91851	broad.mit.edu	37	X	109943935	109943935	+	Missense_Mutation	SNP	A	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:109943935A>T	uc004eou.3	-	7	905	c.556T>A	c.(556-558)TCA>ACA	p.S186T	CHRDL1_uc004eov.2_Missense_Mutation_p.S180T|CHRDL1_uc004eow.2_Missense_Mutation_p.S185T|CHRDL1_uc010nps.2_Missense_Mutation_p.S185T|CHRDL1_uc004eot.2_Missense_Mutation_p.S106T|CHRDL1_uc011mss.1_Missense_Mutation_p.S100T	NM_001143981	NP_001137453	Q9BU40	CRDL1_HUMAN	chordin-like 1 isoform 1 precursor	179					BMP signaling pathway|cell differentiation|nervous system development|ossification	extracellular region					0						TGTTCCCATGACAGTTCTCCA	0.398000													16	41					0	0	0	0
KLHL13	90293	broad.mit.edu	37	X	117043645	117043645	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:117043645G>A	uc004eql.2	-	5	1047	c.985C>T	c.(985-987)CAG>TAG	p.Q329*	KLHL13_uc004eqk.2_Nonsense_Mutation_p.Q278*|KLHL13_uc011mtn.1_Nonsense_Mutation_p.Q169*|KLHL13_uc011mto.1_Nonsense_Mutation_p.Q323*|KLHL13_uc011mtp.1_Nonsense_Mutation_p.Q331*|KLHL13_uc004eqm.2_Nonsense_Mutation_p.Q278*|KLHL13_uc011mtq.1_Nonsense_Mutation_p.Q313*	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	329					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CTGTCTGACTGCATAACTGGC	0.463000													17	51					0	0	0	0
RPL39	6170	broad.mit.edu	37	X	118920677	118920677	+	Silent	SNP	T	C	C	rs139139562	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:118920677T>C	uc004erx.1	-	3	193	c.126A>G	c.(124-126)AGA>AGG	p.R42R		NM_001000	NP_000991	P62891	RL39_HUMAN	ribosomal protein L39	42					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0						TTCTCCAATGTCTCCTTTTGG	0.408000													12	50					0	0	0	0
GPC4	2239	broad.mit.edu	37	X	132438874	132438874	+	Missense_Mutation	SNP	C	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:132438874C>G	uc004exc.1	-	7	1383	c.1171G>C	c.(1171-1173)GAG>CAG	p.E391Q	GPC4_uc011mvg.1_Missense_Mutation_p.E321Q	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	391					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					TTCAGTTTCTCCTTGACATCA	0.428000													13	22					0	0	0	0
MAP7D3	79649	broad.mit.edu	37	X	135303033	135303033	+	Missense_Mutation	SNP	C	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:135303033C>T	uc004ezt.2	-	16	2468	c.2377G>A	c.(2377-2379)GAT>AAT	p.D793N	MAP7D3_uc004ezs.2_Missense_Mutation_p.D757N|MAP7D3_uc011mwc.1_Missense_Mutation_p.D775N|MAP7D3_uc010nsa.1_Missense_Mutation_p.D751N	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	793						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					CTGGTACCATCTTCTAGAAAT	0.378000													65	131					0	0	0	0
SOX3	6658	broad.mit.edu	37	X	139585912	139585912	+	Silent	SNP	G	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:139585912G>A	uc004fbd.1	-	1	1314	c.1314C>T	c.(1312-1314)AAC>AAT	p.N438N		NM_005634	NP_005625	P41225	SOX3_HUMAN	SRY (sex determining region Y)-box 3	438					face development|hypothalamus development|negative regulation of neuron differentiation|pituitary gland development|regulation of transcription, DNA-dependent|sensory organ development|sex determination|transcription, DNA-dependent	nucleus	DNA binding			pancreas(1)	1	Acute lymphoblastic leukemia(192;7.65e-05)					GCACCGTTCCGTTGACTGCAG	0.592000													5	10					0	0	0	0
OPN1MW	2652	broad.mit.edu	37	X	153496125	153496125	+	Missense_Mutation	SNP	G	A	A	rs1065438	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:153496125G>A	uc004fkd.2	+	5	935	c.853G>A	c.(853-855)GCC>ACC	p.A285T		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	285	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					GGGACCCTACGCCTTCTTCGC	0.567000													32	2					0	0	0	0
PLXNA3	55558	broad.mit.edu	37	X	153688695	153688695	+	Missense_Mutation	SNP	C	T	T	rs147019078	byFrequency	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chrX:153688695C>T	uc004flm.2	+	2	345	c.172C>T	c.(172-174)CCC>TCC	p.P58S		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	58	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TAAGCTGGCCCCCAACCTGAC	0.672000													7	24					0	0	0	0
Unknown	0	broad.mit.edu	37	1	30196370	30196372	+	IGR	DEL	CAA	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:30196370_30196372delCAA								PTPRU (543055 upstream) : MATN1 (987754 downstream)																							ccatcaccaccaacaccaccatc	0.000													---	---	---							
CRB1	23418	broad.mit.edu	37	1	197390841	197390841	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:197390841delT	uc001gtz.2	+	6	2018	c.1883delT	c.(1882-1884)CTTfs	p.L628fs	CRB1_uc010poz.1_Frame_Shift_Del_p.L559fs|CRB1_uc010ppa.1_Intron|CRB1_uc009wza.2_Frame_Shift_Del_p.L516fs|CRB1_uc010ppb.1_Frame_Shift_Del_p.L628fs|CRB1_uc010ppc.1_Intron|CRB1_uc010ppd.1_Frame_Shift_Del_p.L109fs|CRB1_uc001gub.1_Frame_Shift_Del_p.L277fs	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	628	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GTTGCTCTGCTTAACTTCTAT	0.428													---	---	---							
RGS7	6000	broad.mit.edu	37	1	241031928	241031929	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:241031928_241031929insA	uc001hyv.2	-	9	897_898	c.567_568insT	c.(565-570)CTTGACfs	p.L189fs	RGS7_uc010pyh.1_Frame_Shift_Ins_p.L163fs|RGS7_uc010pyj.1_Frame_Shift_Ins_p.L105fs|RGS7_uc001hyu.2_Frame_Shift_Ins_p.L189fs|RGS7_uc009xgn.1_Frame_Shift_Ins_p.L136fs|RGS7_uc001hyw.2_Frame_Shift_Ins_p.L189fs|RGS7_uc001hyt.2_Frame_Shift_Ins_p.L21fs	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	189_190					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTTGGCTGTCAAGGATCTTCC	0.465													---	---	---							
OR2M2	391194	broad.mit.edu	37	1	248343571	248343571	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr1:248343571delC	uc010pzf.1	+	1	284	c.284delC	c.(283-285)GCTfs	p.A95fs		NM_001004688	NP_001004688	Q96R28	OR2M2_HUMAN	olfactory receptor, family 2, subfamily M,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			ATTTCTATGGCTGGTTGTGTC	0.463													---	---	---							
Unknown	0	broad.mit.edu	37	10	81788176	81788176	+	IGR	DEL	A	-	-	rs35380147		TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr10:81788176delA								MBL1P (77393 upstream) : LOC219347 (17815 downstream)																							AGCTGTGCATATCTGGACTCC	0.443													---	---	---							
Unknown	0	broad.mit.edu	37	10	130262814	130262814	+	IGR	DEL	A	-	-	rs142355007		TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr10:130262814delA								MKI67 (338346 upstream) : None (None downstream)																							ctcctcctccaccatcctccc	0.025													---	---	---							
OR6A2	8590	broad.mit.edu	37	11	6816289	6816290	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr11:6816289_6816290delAG	uc001mes.1	-	1	850_851	c.650_651delCT	c.(649-651)TCTfs	p.S217fs		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCCCAGTGACAGAGAGTGGCCC	0.500													---	---	---							
PRB1	5542	broad.mit.edu	37	12	11506214	11506214	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr12:11506214delG	uc001qzw.1	-	4	860	c.823delC	c.(823-825)CGAfs	p.R275fs	PRB1_uc001qzu.1_Frame_Shift_Del_p.R142fs|PRB1_uc001qzv.1_Frame_Shift_Del_p.R122fs	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	336	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|14.					extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			GGAGGAGATCGGGCACTTTGG	0.607													---	---	---							
GRTP1	79774	broad.mit.edu	37	13	114018615	114018616	+	5'Flank	INS	-	G	G			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr13:114018615_114018616insG	uc001vtn.2	-						GRTP1_uc010tkc.1_5'Flank|GRTP1_uc010agv.1_5'Flank	NM_024719	NP_078995	Q5TC63	GRTP1_HUMAN	growth hormone regulated TBC protein 1							intracellular	Rab GTPase activator activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0314)|all_epithelial(44;0.011)|all_lung(25;0.0271)|Lung NSC(25;0.0978)|Breast(118;0.188)	all cancers(43;0.025)|GBM - Glioblastoma multiforme(44;0.206)|Epithelial(84;0.246)			agggcgggggaggggcggggct	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	14	59526440	59526440	+	IGR	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr14:59526440delG								DACT1 (411404 upstream) : DAAM1 (128959 downstream)																							ggcaggggcagggggcagggg	0.104													---	---	---							
Unknown	0	broad.mit.edu	37	14	103615778	103615778	+	IGR	DEL	A	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr14:103615778delA								TNFAIP2 (12002 upstream) : EIF5 (184715 downstream)																							TCTGGACTGTAAAAAAAAAAA	0.224													---	---	---							
CREBBP	1387	broad.mit.edu	37	16	3781324	3781326	+	In_Frame_Del	DEL	AGG	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr16:3781324_3781326delAGG	uc002cvv.2	-	30	5243_5245	c.5039_5041delCCT	c.(5038-5043)TCCTTG>TTG	p.S1680del	CREBBP_uc002cvw.2_In_Frame_Del_p.S1642del	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	1680	Interaction with TRERF1.				cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GAGCGGCGCAAGGAGGAGAACTC	0.645			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				---	---	---							
KRTAP1-5	83895	broad.mit.edu	37	17	39183012	39183012	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr17:39183012delG	uc002hvu.2	-	1	443	c.396delC	c.(394-396)CCCfs	p.P132fs		NM_031957	NP_114163	Q9BYS1	KRA15_HUMAN	keratin associated protein 1.5	132	15 X 5 AA repeats of C-C-[QEPVRC]- [TPIVLE]-[SRHVP].					keratin filament					0		Breast(137;0.00043)	STAD - Stomach adenocarcinoma(17;0.000371)			CCACACAGCAGGGGGGTAGGT	0.667													---	---	---							
KCNG2	26251	broad.mit.edu	37	18	77623691	77623692	+	In_Frame_Ins	INS	-	GGC	GGC	rs71338073		TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr18:77623691_77623692insGGC	uc010xfl.1	+	1	24_25	c.24_25insGGC	c.(22-27)insGGC	p.13_14insG		NM_012283	NP_036415	Q9UJ96	KCNG2_HUMAN	potassium voltage-gated channel, subfamily G,	13_14	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of heart contraction|regulation of insulin secretion	voltage-gated potassium channel complex	delayed rectifier potassium channel activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;6.92e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0244)		CCTGCTccccgggcggcggcgg	0.614													---	---	---							
PLIN5	440503	broad.mit.edu	37	19	4523641	4523642	+	In_Frame_Ins	INS	-	CCCATT	CCCATT			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr19:4523641_4523642insCCCATT	uc002mas.2	-	8	1343_1344	c.1290_1291insAATGGG	c.(1288-1293)insAATGGG	p.430_431insNG		NM_001013706	NP_001013728	Q00G26	PLIN5_HUMAN	lipid storage droplet protein 5	430_431						lipid particle					0						CTGTCCCCATCCCCATTCCCAC	0.688											OREG0025168	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	---	---	---							
AKAP8	10270	broad.mit.edu	37	19	15466133	15466135	+	In_Frame_Del	DEL	CTC	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr19:15466133_15466135delCTC	uc002nav.2	-	14	1731_1733	c.1670_1672delGAG	c.(1669-1674)GGAGAT>GAT	p.G557del	AKAP8_uc010dzy.2_In_Frame_Del_p.G106del	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	557					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						AAATTGTCATCTCCTTCCATTTC	0.542													---	---	---							
MAP4K3	8491	broad.mit.edu	37	2	39499427	39499427	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr2:39499427delG	uc002rro.2	-	26	2061	c.1970delC	c.(1969-1971)CCAfs	p.P657fs	MAP4K3_uc002rrp.2_Frame_Shift_Del_p.P636fs|MAP4K3_uc010yns.1_Frame_Shift_Del_p.P210fs	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	657	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				CCCTTACCTTGGCAGTATTCT	0.358													---	---	---							
Unknown	0	broad.mit.edu	37	21	21112411	21112411	+	IGR	DEL	G	-	-	rs1829338	by1000genomes	TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr21:21112411delG								None (None upstream) : None (None downstream)																							aacaaggagagaaaaaaaaaA	0.154													---	---	---							
Unknown	0	broad.mit.edu	37	22	16349289	16349290	+	IGR	DEL	AC	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr22:16349289_16349290delAC								POTEH (61352 upstream) : OR11H1 (99536 downstream)																							ATATATGTGGACACACACACAC	0.342													---	---	---							
GPRIN3	285513	broad.mit.edu	37	4	90169364	90169364	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:90169364delC	uc003hsm.1	-	2	2417	c.1898delG	c.(1897-1899)CGCfs	p.R633fs		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	633										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GCTGGGCCTGCGTGGGCTGGC	0.572													---	---	---							
GRID2	2895	broad.mit.edu	37	4	94411878	94411878	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:94411878delG	uc011cdt.1	+	12	2205	c.1947delG	c.(1945-1947)ACGfs	p.T649fs	GRID2_uc011cdu.1_Frame_Shift_Del_p.T554fs	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	649	Helical; (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CATCTTACACGGCAAACCTCG	0.438													---	---	---							
Unknown	0	broad.mit.edu	37	4	111321027	111321027	+	IGR	DEL	G	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr4:111321027delG								ELOVL6 (201207 upstream) : ENPEP (76202 downstream)																							GTAGCATGATGGGCCACTGAG	0.512													---	---	---							
LPCAT1	79888	broad.mit.edu	37	5	1489905	1489907	+	In_Frame_Del	DEL	CTA	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr5:1489905_1489907delCTA	uc003jcm.2	-	4	677_679	c.560_562delTAG	c.(559-564)GTAGAA>GAA	p.V187del		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	187	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TTGATTTCTTCTACTGTTTTCCT	0.512													---	---	---							
TCTE1	202500	broad.mit.edu	37	6	44250240	44250241	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr6:44250240_44250241insA	uc003oxi.2	-	4	1058_1059	c.902_903insT	c.(901-903)CGAfs	p.R301fs	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	301										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			CCAGAAGGCTTCGAATTATGAT	0.564													---	---	---							
Unknown	0	broad.mit.edu	37	6	170402621	170402622	+	IGR	DEL	GG	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr6:170402621_170402622delGG								C6orf208 (199652 upstream) : LOC154449 (160800 downstream)																							agcgtggtgtggggggggaccg	0.248													---	---	---							
ABCB5	340273	broad.mit.edu	37	7	20721196	20721197	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:20721196_20721197delTG	uc003suw.3	+	6	987_988	c.441_442delTG	c.(439-444)ATTGTGfs	p.I147fs	ABCB5_uc010kuh.2_Frame_Shift_Del_p.I592fs	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	147_148	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						CAGATTTGATTGTGACCCTAAA	0.416													---	---	---							
ARMC10	83787	broad.mit.edu	37	7	102724150	102724151	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:102724150_102724151insT	uc003vaw.1	+	3	658_659	c.266_267insT	c.(265-267)TATfs	p.Y89fs	ARMC10_uc003vay.1_Frame_Shift_Ins_p.Y89fs|ARMC10_uc003vax.1_Frame_Shift_Ins_p.Y54fs|ARMC10_uc003vbb.1_Frame_Shift_Ins_p.Y54fs|ARMC10_uc011kli.1_Frame_Shift_Ins_p.Y54fs|ARMC10_uc010lis.1_Frame_Shift_Ins_p.Y54fs|ARMC10_uc003vba.1_RNA|ARMC10_uc003vaz.1_5'UTR	NM_031905	NP_114111	Q8N2F6	ARM10_HUMAN	SVH protein isoform a	89					regulation of growth	endoplasmic reticulum membrane|integral to membrane	binding			ovary(1)	1						GATGGTTCATATGATGATGTTC	0.302													---	---	---							
METTL2B	55798	broad.mit.edu	37	7	128119226	128119227	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:128119226_128119227insT	uc003vnf.2	+	3	254_255	c.217_218insT	c.(217-219)AATfs	p.N73fs	METTL2B_uc003vng.2_Frame_Shift_Ins_p.N8fs|METTL2B_uc011kop.1_Translation_Start_Site	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	73							methyltransferase activity			skin(1)	1						TTATGAGATCAATGCCCACAAA	0.337													---	---	---							
OR6V1	346517	broad.mit.edu	37	7	142750181	142750181	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr7:142750181delC	uc011ksv.1	+	1	744	c.744delC	c.(742-744)ATCfs	p.I248fs		NM_001001667	NP_001001667	Q8N148	OR6V1_HUMAN	olfactory receptor, family 6, subfamily V,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.059)					TGGTCTTCATCGGCTACAGTA	0.552													---	---	---							
Unknown	0	broad.mit.edu	37	8	47583907	47583907	+	IGR	DEL	T	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr8:47583907delT								None (None upstream) : BEYLA (168601 downstream)																							AAAATGTTCATTTTTTTTTAT	0.274													---	---	---							
Unknown	0	broad.mit.edu	37	9	74204892	74204892	+	IGR	DEL	A	-	-			TCGA-BB-7872-01A-11D-2229-08	TCGA-BB-7872-10A-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	c05cb0b5-b288-48fb-bdc0-ee9acd6643a8	02e5dbe6-3c6f-4696-80bc-5b5ddb764980	g.chr9:74204892delA								TRPM3 (143072 upstream) : TMEM2 (93390 downstream)																							TATGCTCTTGAAAAAAAAAAT	0.393													---	---	---							
