Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
HTR1D	3352	broad.mit.edu	37	1	23519918	23519918	+	Silent	SNP	C	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:23519918C>T	uc001bgn.2	-	1	1305	c.795G>A	c.(793-795)TCG>TCA	p.S265S		NM_000864	NP_000855	P28221	5HT1D_HUMAN	5-hydroxytryptamine (serotonin) receptor 1D	265	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|intestine smooth muscle contraction|synaptic transmission	integral to plasma membrane	serotonin receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000779)|all_lung(284;0.00135)|Breast(348;0.0385)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0561)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;4.69e-27)|Colorectal(126;4.86e-08)|COAD - Colon adenocarcinoma(152;2.86e-06)|GBM - Glioblastoma multiforme(114;0.00012)|BRCA - Breast invasive adenocarcinoma(304;0.000949)|KIRC - Kidney renal clear cell carcinoma(1967;0.00122)|STAD - Stomach adenocarcinoma(196;0.0123)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.083)|LUSC - Lung squamous cell carcinoma(448;0.185)	Almotriptan(DB00918)|Dihydroergotamine(DB00320)|Eletriptan(DB00216)|Ergotamine(DB00696)|Frovatriptan(DB00998)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Tegaserod(DB01079)|Ziprasidone(DB00246)|Zolmitriptan(DB00315)	CAGCCGAGTGCGAGTGCCCCT	0.582000													24	78					0	0	0	0
SYNC	81493	broad.mit.edu	37	1	33149861	33149861	+	Silent	SNP	A	G	G			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:33149861A>G	uc001bvt.2	-	3	1456	c.1356T>C	c.(1354-1356)TAT>TAC	p.Y452Y	SYNC_uc010ohl.1_Silent_p.Y452Y|RBBP4_uc001bvr.2_3'UTR|RBBP4_uc001bvs.2_3'UTR|RBBP4_uc010ohj.1_3'UTR|RBBP4_uc010ohk.1_3'UTR	NM_030786	NP_110413	Q9H7C4	SYNCI_HUMAN	syncoilin, intermediate filament 1 isoform 1	452	Coil 2.					intermediate filament|perinuclear region of cytoplasm	structural molecule activity			ovary(1)	1						AAACTGACTTATAAGTAGAGA	0.428000													106	259					0	0	0	0
HPDL	84842	broad.mit.edu	37	1	45793539	45793539	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:45793539G>A	uc001cne.2	+	1	995	c.719G>A	c.(718-720)CGA>CAA	p.R240Q		NM_032756	NP_116145	Q96IR7	HPDL_HUMAN	glyoxalase domain containing 1	240					aromatic amino acid family metabolic process		4-hydroxyphenylpyruvate dioxygenase activity|metal ion binding				0	Acute lymphoblastic leukemia(166;0.155)					GCGACGACACGACAGGACCAG	0.652000													33	116					0	0	0	0
CCDC76	54482	broad.mit.edu	37	1	100613819	100613819	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:100613819A>G	uc001dsv.2	+	10	1206	c.1187A>G	c.(1186-1188)GAT>GGT	p.D396G	CCDC76_uc010ouf.1_RNA|CCDC76_uc009wea.2_Intron	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	396					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		CAGAATGATGATAGTGAAGAG	0.408000													36	90					0	0	0	0
PEAR1	375033	broad.mit.edu	37	1	156878077	156878077	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:156878077T>A	uc001fqj.1	+	9	1176	c.1060T>A	c.(1060-1062)TTC>ATC	p.F354I	PEAR1_uc009wsl.1_Missense_Mutation_p.F155I|PEAR1_uc001fqk.1_5'UTR	NM_001080471	NP_001073940	Q5VY43	PEAR1_HUMAN	platelet endothelial aggregation receptor 1	354						integral to membrane				ovary(2)|central_nervous_system(1)	3	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCCGACGGCTTCTACGGTCT	0.692000													6	8					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186113447	186113447	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:186113447G>A	uc001grq.1	+	90	14296	c.14067G>A	c.(14065-14067)ATG>ATA	p.M4689I	HMCN1_uc001grs.1_Missense_Mutation_p.M258I	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4689	TSP type-1 3.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAACACAGATGCAAGTTTGCA	0.388000													34	132					0	0	0	0
Unknown	0	broad.mit.edu	37	1	211380770	211380770	+	Missense_Mutation	SNP	T	C	C	rs7525401	by1000genomes	TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:211380770T>C	uc001hid.2	+	1	382	c.190T>C	c.(190-192)TGC>CGC	p.C64R						SubName: Full=Px19-like protein, isoform CRA_c; SubName: Full=cDNA, FLJ92457, Homo sapiens px19-like protein (PX19), mRNA;																		CAGGACGCCCTGCTGGGCCGA	0.552000													6	19					0	0	0	0
NLRP3	114548	broad.mit.edu	37	1	247597557	247597557	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:247597557G>A	uc001icr.2	+	7	2618	c.2480G>A	c.(2479-2481)TGC>TAC	p.C827Y	NLRP3_uc001ics.2_Missense_Mutation_p.C827Y|NLRP3_uc001icu.2_Missense_Mutation_p.C827Y|NLRP3_uc001icw.2_Missense_Mutation_p.C770Y|NLRP3_uc001icv.2_Missense_Mutation_p.C770Y|NLRP3_uc010pyw.1_Missense_Mutation_p.C805Y	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	827					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			CACCTGTTGTGCAATCTGAAG	0.592000													21	71					0	0	0	0
FOLH1	2346	broad.mit.edu	37	11	49168484	49168484	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr11:49168484C>T	uc001ngy.2	-	19	2338	c.2077G>A	c.(2077-2079)GCT>ACT	p.A693T	FOLH1_uc001ngx.2_Missense_Mutation_p.M92I|FOLH1_uc001ngz.2_Missense_Mutation_p.A662T|FOLH1_uc009yly.2_Missense_Mutation_p.A678T|FOLH1_uc009ylz.2_Missense_Mutation_p.A647T|FOLH1_uc009yma.2_Missense_Mutation_p.A385T	NM_004476	NP_004467	Q04609	FOLH1_HUMAN	folate hydrolase 1 isoform 1	693	Extracellular (Probable).				proteolysis	cytoplasm|integral to plasma membrane|membrane fraction|nucleus	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity			large_intestine(1)|ovary(1)|skin(1)	3					Capromab(DB00089)|L-Glutamic Acid(DB00142)	CTGCTTGGAGCATAGATGACA	0.438000													22	81					0	0	0	0
ARRB1	408	broad.mit.edu	37	11	74987886	74987886	+	Missense_Mutation	SNP	G	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr11:74987886G>T	uc001owe.1	-	10	995	c.773C>A	c.(772-774)GCT>GAT	p.A258D	ARRB1_uc001owf.1_Missense_Mutation_p.A258D	NM_004041	NP_004032	P49407	ARRB1_HUMAN	arrestin beta 1 isoform A	258					G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(2)	2						CACTTACTCAGCCTCTTCCAT	0.537000													11	23					5.16669e-11	5.47061e-11	1	0
C11orf53	341032	broad.mit.edu	37	11	111156492	111156492	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr11:111156492G>C	uc001plc.2	+	4	571	c.424G>C	c.(424-426)GGG>CGG	p.G142R		NM_198498	NP_940900	Q8IXP5	CK053_HUMAN	hypothetical protein LOC341032	142											0		all_cancers(61;2.05e-09)|Melanoma(852;4.04e-05)|all_epithelial(67;6.15e-05)|all_hematologic(158;0.000826)|Acute lymphoblastic leukemia(157;0.000966)|all_neural(223;0.0332)|Medulloblastoma(222;0.0425)|Breast(348;0.147)		Epithelial(105;1.7e-06)|BRCA - Breast invasive adenocarcinoma(274;3.16e-06)|all cancers(92;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0507)		GCTTGAGTCCGGGAGCATCGC	0.642000													21	61					0	0	0	0
Unknown	0	broad.mit.edu	37	11	113661349	113661349	+	RNA	SNP	A	G	G	rs1713675	by1000genomes	TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr11:113661349A>G	uc001pof.1	+	1		c.1397A>G								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		GGGTATAGATAACCTGGAAAC	0.478000													27	69					0	0	0	0
TMCC3	57458	broad.mit.edu	37	12	94972193	94972193	+	Missense_Mutation	SNP	A	G	G			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr12:94972193A>G	uc001tdj.2	-	3	1226	c.1108T>C	c.(1108-1110)TAC>CAC	p.Y370H	TMCC3_uc001tdi.2_Missense_Mutation_p.Y339H	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	370	Potential.					integral to membrane				ovary(1)|skin(1)	2						GAGCGCTCGTAGGCCTGGTAG	0.542000													20	60					0	0	0	0
CETP	1071	broad.mit.edu	37	16	57007305	57007305	+	Silent	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr16:57007305G>A	uc002eki.2	+	9	870	c.813G>A	c.(811-813)CTG>CTA	p.L271L	CETP_uc002ekj.2_Intron	NM_000078	NP_000069	P11597	CETP_HUMAN	cholesteryl ester transfer protein, plasma	271					cholesterol homeostasis|cholesterol metabolic process|high-density lipoprotein particle remodeling|lipoprotein metabolic process|low-density lipoprotein particle remodeling|phosphatidylcholine metabolic process|phospholipid homeostasis|receptor-mediated endocytosis|regulation of cholesterol efflux|triglyceride homeostasis|triglyceride metabolic process|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle|vesicle	cholesterol binding|cholesterol transporter activity|phosphatidylcholine binding|phospholipid transporter activity|triglyceride binding			central_nervous_system(1)|skin(1)	2						CGCCCACACTGCTGGGGGACT	0.597000													24	61					0	0	0	0
MEIS3P1	4213	broad.mit.edu	37	17	15690888	15690888	+	Missense_Mutation	SNP	C	G	G	rs4791638	by1000genomes	TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr17:15690888C>G	uc002gpc.2	+	1	725	c.704C>G	c.(703-705)GCC>GGC	p.A235G		NR_002211				RecName: Full=Homeobox protein Meis3; AltName: Full=Meis1-related protein 2;												0						CAGGGTGCAGCCTTCAGCCCA	0.582000													7	23					0	0	0	0
RHBDF2	79651	broad.mit.edu	37	17	74467882	74467882	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr17:74467882G>A	uc002jrq.1	-	19	2697	c.2404C>T	c.(2404-2406)CGG>TGG	p.R802W	RHBDF2_uc002jrp.1_Missense_Mutation_p.R773W|RHBDF2_uc002jrr.1_3'UTR	NM_024599	NP_078875	Q6PJF5	RHDF2_HUMAN	rhomboid, veinlet-like 6 isoform 1	802	Cytoplasmic (Potential).				negative regulation of protein secretion|protein transport|proteolysis	endoplasmic reticulum membrane|integral to membrane	growth factor binding|serine-type endopeptidase activity				0						ATGAGTGCCCGCTTGCGGTAC	0.617000													5	11					0	0	0	0
ARHGEF1	9138	broad.mit.edu	37	19	42409386	42409386	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:42409386G>A	uc002orx.2	+	24	2418	c.2309G>A	c.(2308-2310)CGC>CAC	p.R770H	ARHGEF1_uc002ory.2_Missense_Mutation_p.R737H|ARHGEF1_uc002orz.2_Missense_Mutation_p.R608H|ARHGEF1_uc002osa.2_Missense_Mutation_p.R785H|ARHGEF1_uc002osb.2_Missense_Mutation_p.R752H|ARHGEF1_uc002osc.2_Missense_Mutation_p.R524H|ARHGEF1_uc002osd.2_Missense_Mutation_p.R429H|ARHGEF1_uc002ose.2_Missense_Mutation_p.R214H	NM_004706	NP_004697	Q92888	ARHG1_HUMAN	Rho guanine nucleotide exchange factor 1 isoform	770					cell proliferation|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|positive regulation of axonogenesis|regulation of Rho protein signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(3)|large_intestine(1)	4		Renal(1328;0.000518)|Hepatocellular(1079;0.0046)|Medulloblastoma(540;0.0425)		Epithelial(262;5.89e-46)|GBM - Glioblastoma multiforme(1328;2.49e-12)|STAD - Stomach adenocarcinoma(1328;0.00644)		CCTGCCTCTCGCCCTAAGCCC	0.667000													26	77					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44891069	44891069	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:44891069G>C	uc002ozd.3	-	4	1425	c.1338C>G	c.(1336-1338)CAC>CAG	p.H446Q	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.H453Q	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	446	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						GGACTCTCTGGTGAATGTGAA	0.473000													14	51					0	0	0	0
BCL3	602	broad.mit.edu	37	19	45262784	45262784	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:45262784C>T	uc010xxe.1	+	9	1347	c.1277C>T	c.(1276-1278)CCA>CTA	p.P426L		NM_005178	NP_005169	P20749	BCL3_HUMAN	B-cell CLL/lymphoma 3	426	Pro/Ser-rich.				DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|I-kappaB kinase/NF-kappaB cascade|maintenance of protein location in nucleus|negative regulation of apoptosis|negative regulation of interleukin-8 biosynthetic process|negative regulation of transcription, DNA-dependent|positive regulation of translation|protein import into nucleus, translocation|regulation of DNA binding|regulation of NF-kappaB import into nucleus|response to UV-C|response to virus	Bcl3-Bcl10 complex|Bcl3/NF-kappaB2 complex|nucleus|perinuclear region of cytoplasm	protein binding, bridging|transcription factor binding			ovary(1)|lung(1)	2	Lung NSC(12;0.000698)|all_lung(12;0.002)	Ovarian(192;0.0728)				CTTCCTTCCCCATCTCCACCC	0.682000			T	IGH@	CLL 								89	331					0	0	0	0
IFNAR1	3454	broad.mit.edu	37	21	34725168	34725168	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr21:34725168T>A	uc002yrn.2	+	9	1395	c.1248T>A	c.(1246-1248)AAT>AAA	p.N416K	IFNAR1_uc011adv.1_Missense_Mutation_p.N347K	NM_000629	NP_000620	P17181	INAR1_HUMAN	interferon-alpha receptor 1 precursor	416	Fibronectin type-III 3.|Extracellular (Potential).				JAK-STAT cascade|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	integral to plasma membrane	type I interferon receptor activity			central_nervous_system(1)|skin(1)	2					Interferon Alfa-2a, Recombinant(DB00034)|Interferon Alfa-2b, Recombinant(DB00105)|Interferon alfa-n1(DB00011)|Interferon alfa-n3(DB00018)|Interferon alfacon-1(DB00069)|Interferon beta-1b(DB00068)|Peginterferon alfa-2a(DB00008)|Peginterferon alfa-2b(DB00022)	AAAAGCTGAATAAAAGCAGTG	0.323000													15	50					0	0	0	0
SAPS2	9701	broad.mit.edu	37	22	50854550	50854550	+	Silent	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr22:50854550G>A	uc003blb.1	+	7	1004	c.582G>A	c.(580-582)AGG>AGA	p.R194R	SAPS2_uc003bky.1_Silent_p.R194R|SAPS2_uc003bkz.1_Silent_p.R194R|SAPS2_uc003blc.2_Silent_p.R194R|SAPS2_uc003bla.1_Silent_p.R194R	NM_014678	NP_055493	O75170	PP6R2_HUMAN	SAPS domain family, member 2	194						cytoplasm|intracellular membrane-bounded organelle	protein binding				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.222)		TCATCCAGAGGCTTGTGGAGT	0.517000													19	64					0	0	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86333749	86333749	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr6:86333749T>A	uc003pla.2	-	7	1289	c.748A>T	c.(748-750)ATT>TTT	p.I250F	SYNCRIP_uc003pku.2_Missense_Mutation_p.I250F|SYNCRIP_uc003pkw.2_Missense_Mutation_p.I250F|SYNCRIP_uc003pky.2_Missense_Mutation_p.I152F|SYNCRIP_uc003pkv.2_Missense_Mutation_p.I250F|SYNCRIP_uc003pkx.2_Missense_Mutation_p.I98F|SYNCRIP_uc003pkz.2_Missense_Mutation_p.I250F	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	250	RRM 2.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CTCTTAGGAATAGAGCCCACA	0.348000													12	27					0	0	0	0
RARS2	57038	broad.mit.edu	37	6	88227948	88227948	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr6:88227948C>A	uc003pme.2	-	17	1510	c.1450G>T	c.(1450-1452)GAC>TAC	p.D484Y	RARS2_uc003pmb.2_Missense_Mutation_p.D309Y|RARS2_uc003pmc.2_Missense_Mutation_p.D309Y|RARS2_uc003pmd.2_Missense_Mutation_p.D121Y|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	484					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		GTGTTGAAGTCATTCAGGTAC	0.383000													23	70					9.86323e-18	1.10961e-17	1	0
TMEM184A	202915	broad.mit.edu	37	7	1588285	1588285	+	Silent	SNP	G	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr7:1588285G>A	uc003skv.3	-	7	1001	c.684C>T	c.(682-684)AAC>AAT	p.N228N	TMEM184A_uc003skt.3_Silent_p.N207N|TMEM184A_uc003skw.3_Silent_p.N33N	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	228	Helical; (Potential).					integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		TGACGGAGGCGTTGTAGATGA	0.632000													17	46					0	0	0	0
ELP3	55140	broad.mit.edu	37	8	28017757	28017757	+	Silent	SNP	A	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr8:28017757A>T	uc003xgo.3	+	13	1417	c.1269A>T	c.(1267-1269)GTA>GTT	p.V423V	ELP3_uc003xgn.3_Silent_p.V408V|ELP3_uc011laq.1_Silent_p.V351V|ELP3_uc011lar.1_Silent_p.V331V|ELP3_uc011las.1_Silent_p.V304V|ELP3_uc011lat.1_Silent_p.V304V	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	423	N-acetyltransferase.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		TTGAATTGGTAAGGAGAGATT	0.313000													10	36					0	0	0	0
TRHR	7201	broad.mit.edu	37	8	110099808	110099808	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr8:110099808G>T	uc003ymz.3	+	1	83	c.67G>T	c.(67-69)GAA>TAA	p.E23*		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	23	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			GGTGGCCTTAGAATACCAGGT	0.458000													12	36					7.93312e-07	8.15978e-07	1	0
DFNB31	25861	broad.mit.edu	37	9	117266568	117266568	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr9:117266568C>T	uc004biz.3	-	1	1163	c.514G>A	c.(514-516)GAA>AAA	p.E172K	DFNB31_uc004biy.3_5'Flank|DFNB31_uc004bja.3_Missense_Mutation_p.E172K|DFNB31_uc004bjb.2_Missense_Mutation_p.E172K	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	172	PDZ 1.				inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GAGCCTGGTTCCACCAGAGAC	0.662000													28	100					0	0	0	0
DPP7	29952	broad.mit.edu	37	9	140006472	140006472	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr9:140006472C>T	uc004clh.2	-	10	1090	c.1060G>A	c.(1060-1062)GAG>AAG	p.E354K		NM_013379	NP_037511	Q9UHL4	DPP2_HUMAN	dipeptidyl peptidase 7 preproprotein	354						cytoplasmic membrane-bounded vesicle|extracellular region|lysosome	aminopeptidase activity|protein binding|serine-type peptidase activity				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;4.25e-05)|Epithelial(140;0.000633)		AGGTTGATCTCGGTGCAGGCC	0.657000													14	55					0	0	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811300	5811300	+	Missense_Mutation	SNP	T	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chrX:5811300T>A	uc010ndh.2	-	6	2510	c.2009A>T	c.(2008-2010)GAT>GTT	p.D670V	NLGN4X_uc004crp.2_Missense_Mutation_p.D690V|NLGN4X_uc004crq.2_Missense_Mutation_p.D670V|NLGN4X_uc010ndi.2_Missense_Mutation_p.D707V|NLGN4X_uc004crr.2_Missense_Mutation_p.D670V|NLGN4X_uc010ndj.2_Missense_Mutation_p.D670V	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	670	Extracellular (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						GGTGGAATAATCTCGTTTGGT	0.498000													30	43					0	0	0	0
NXF3	56000	broad.mit.edu	37	X	102333543	102333543	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chrX:102333543C>A	uc004eju.2	-	17	1467	c.1396G>T	c.(1396-1398)GGT>TGT	p.G466C	NXF3_uc010noi.1_Missense_Mutation_p.G312V	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	466	NTF2.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						AGAACAGAACCCTGAGACTGT	0.532000													34	119					4.25531e-23	4.94166e-23	1	0
KPRP	448834	broad.mit.edu	37	1	152733723	152733724	+	Frame_Shift_Ins	INS	-	C	C			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:152733723_152733724insC	uc001fal.1	+	2	1717_1718	c.1659_1660insC	c.(1657-1662)GAGCGGfs	p.E553fs		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	553_554						cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGTTTCCAGAGCGGAGGGGTCA	0.540													---	---	---							
RASAL2	9462	broad.mit.edu	37	1	178412244	178412245	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr1:178412244_178412245insT	uc001glr.2	+	6	1043_1044	c.918_919insT	c.(916-921)GAATTTfs	p.E306fs	RASAL2_uc001glq.2_Frame_Shift_Ins_p.E454fs	NM_004841	NP_004832	Q9UJF2	NGAP_HUMAN	RAS protein activator like 2 isoform 1	306_307					negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity			ovary(2)|breast(2)|large_intestine(1)	5						AATTTGCAGAATTTGTCACCAG	0.421													---	---	---							
KCNMA1	3778	broad.mit.edu	37	10	78729786	78729786	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr10:78729786delT	uc001jxn.2	-	20	2483	c.2306delA	c.(2305-2307)AAGfs	p.K769fs	KCNMA1_uc001jxj.2_Frame_Shift_Del_p.K715fs|KCNMA1_uc001jxk.1_Frame_Shift_Del_p.K387fs|KCNMA1_uc009xrt.1_Frame_Shift_Del_p.K560fs|KCNMA1_uc001jxl.1_Frame_Shift_Del_p.K394fs|KCNMA1_uc001jxo.2_Frame_Shift_Del_p.K711fs|KCNMA1_uc001jxm.2_Frame_Shift_Del_p.K711fs|KCNMA1_uc001jxq.2_Frame_Shift_Del_p.K714fs	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	769	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	ATTCCGTTGCTTTTTTTTTGG	0.502													---	---	---							
FAM101A	144347	broad.mit.edu	37	12	124798924	124798926	+	In_Frame_Del	DEL	CAT	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr12:124798924_124798926delCAT	uc001ugd.1	+	3	504_506	c.261_263delCAT	c.(259-264)ACCATC>ACC	p.I89del	FAM101A_uc001uge.1_In_Frame_Del_p.I89del	NM_181709	NP_859060	Q6ZTI6	F101A_HUMAN	hypothetical protein LOC144347	170											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;2.38e-05)|OV - Ovarian serous cystadenocarcinoma(86;6.95e-05)|all cancers(50;0.000361)|BRCA - Breast invasive adenocarcinoma(302;0.059)		GCAGCACCACCATCATCTTCCCC	0.685													---	---	---							
Unknown	0	broad.mit.edu	37	13	44544706	44544706	+	IGR	DEL	G	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr13:44544706delG								C13orf31 (76639 upstream) : LOC121838 (51765 downstream)																							TCCCCCAAGTGGTGCTTCCTG	0.577													---	---	---							
Unknown	0	broad.mit.edu	37	15	56298047	56298048	+	IGR	DEL	TG	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr15:56298047_56298048delTG								NEDD4 (12212 upstream) : RFX7 (81431 downstream)																							AACCAGCCATTGAGGATCTAAA	0.455													---	---	---							
ZNF609	23060	broad.mit.edu	37	15	64972995	64972997	+	In_Frame_Del	DEL	CAC	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr15:64972995_64972997delCAC	uc002ann.2	+	7	4096_4098	c.4096_4098delCAC	c.(4096-4098)CACdel	p.H1371del		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	1371	Poly-His.					nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						GATGTCCACACACCACCACCACC	0.576													---	---	---							
KRTAP1-5	83895	broad.mit.edu	37	17	39183012	39183012	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr17:39183012delG	uc002hvu.2	-	1	443	c.396delC	c.(394-396)CCCfs	p.P132fs		NM_031957	NP_114163	Q9BYS1	KRA15_HUMAN	keratin associated protein 1.5	132	15 X 5 AA repeats of C-C-[QEPVRC]- [TPIVLE]-[SRHVP].					keratin filament					0		Breast(137;0.00043)	STAD - Stomach adenocarcinoma(17;0.000371)			CCACACAGCAGGGGGGTAGGT	0.667													---	---	---							
CD177	57126	broad.mit.edu	37	19	43858524	43858524	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:43858524delG	uc002owi.2	+	3	401	c.359delG	c.(358-360)TGGfs	p.W120fs	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	120					blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				CTCCCGCTTTGGGCCCCACAG	0.652													---	---	---							
RPL18	6141	broad.mit.edu	37	19	49118662	49118663	+	Frame_Shift_Ins	INS	-	AA	AA			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:49118662_49118663insAA	uc002pjq.1	-	7	566_567	c.533_534insTT	c.(532-534)AGAfs	p.R178fs	FAM83E_uc002pjn.2_5'Flank|RPL18_uc002pjp.1_Frame_Shift_Ins_p.R126fs	NM_000979	NP_000970	Q07020	RL18_HUMAN	ribosomal protein L18	178					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	RNA binding|structural constituent of ribosome				0		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.89e-05)|all cancers(93;0.00011)|GBM - Glioblastoma multiforme(486;0.0061)|Epithelial(262;0.0154)		CCCGTCGGCCTCTGGCACGCTC	0.559													---	---	---							
Unknown	0	broad.mit.edu	37	19	53833023	53833024	+	IGR	INS	-	T	T	rs112929393		TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr19:53833023_53833024insT								BIRC8 (38148 upstream) : ZNF845 (3978 downstream)																							TCAGAAAAttcttttttttttt	0.203													---	---	---							
Unknown	0	broad.mit.edu	37	22	20150243	20150248	+	IGR	DEL	CCACCA	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr22:20150243_20150248delCCACCA								ZDHHC8 (14714 upstream) : LOC150197 (43607 downstream)																							accatcactgccaccaccaccaccac	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	3	88516375	88516377	+	IGR	DEL	CCT	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr3:88516375_88516377delCCT								C3orf38 (309262 upstream) : EPHA3 (640297 downstream)																							tcctccaccacctcctcctcctc	0.163													---	---	---							
Unknown	0	broad.mit.edu	37	5	68902898	68902898	+	5'Flank	DEL	T	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr5:68902898delT	uc010ixi.1	+											Homo sapiens cDNA, FLJ18088.																		GACTGCGCGATTTTTTTTTGC	0.403													---	---	---							
KCTD16	57528	broad.mit.edu	37	5	143853531	143853531	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr5:143853531delA	uc003lnm.1	+	4	1770	c.1141delA	c.(1141-1143)AAAfs	p.K381fs	KCTD16_uc003lnn.1_Frame_Shift_Del_p.K381fs	NM_020768	NP_065819	Q68DU8	KCD16_HUMAN	potassium channel tetramerisation domain	381						cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			large_intestine(2)|ovary(1)|skin(1)	4		all_hematologic(541;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00111)|Kidney(363;0.00176)			CATGAGCAGCAAAAAAAAAGC	0.468													---	---	---							
Unknown	0	broad.mit.edu	37	5	165809675	165809676	+	IGR	INS	-	AA	AA			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr5:165809675_165809676insAA								None (None upstream) : ODZ2 (902167 downstream)																							CTTACTTCTTTAAAAAAAAAAA	0.356													---	---	---							
Unknown	0	broad.mit.edu	37	9	44090331	44090331	+	IGR	DEL	T	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr9:44090331delT								FAM75A6 (459601 upstream) : FAM27C (899905 downstream)																							TTCTTTGTACTGCTCCTTTCA	0.328													---	---	---							
Unknown	0	broad.mit.edu	37	9	76811716	76811721	+	IGR	DEL	TCTGCC	-	-	rs140125319		TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chr9:76811716_76811721delTCTGCC								None (None upstream) : RORB (300531 downstream)																							GCATAGAGGAtctgcctctgcctctg	0.155													---	---	---							
ITIH5L	347365	broad.mit.edu	37	X	54824635	54824635	+	Frame_Shift_Del	DEL	C	-	-			TCGA-DQ-7590-01A-11D-2229-08	TCGA-DQ-7590-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	5cbcfa67-f062-4a03-84ad-dabfbcf14514	1165b9b5-0a5a-44e2-8bff-74e98cdb9d99	g.chrX:54824635delC	uc004dtj.2	-	1	39	c.9delG	c.(7-9)GGGfs	p.G3fs		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	3					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						GGTACCTCCACCCAGACATGA	0.507													---	---	---							
