Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
F5	2153	broad.mit.edu	37	1	169511588	169511588	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr1:169511588C>T	uc001ggg.1	-	13	2885	c.2740G>A	c.(2740-2742)GAC>AAC	p.D914N		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	914	2 X 17 AA tandem repeats.|B.|1-2.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GAACCAGTGTCTTGGCTAGGA	0.478000													26	92					0	0	0	0
PTPN14	5784	broad.mit.edu	37	1	214558119	214558119	+	Missense_Mutation	SNP	T	G	G	rs112523432	byFrequency	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr1:214558119T>G	uc001hkk.1	-	13	1350	c.1079A>C	c.(1078-1080)CAT>CCT	p.H360P	PTPN14_uc010pty.1_Missense_Mutation_p.H261P	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	360			H -> P (in a breast cancer sample; somatic mutation).		lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding	p.H360P(1)		breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TTCATTCCCATGAAAAATGCT	0.433000													10	33					0	0	0	0
NET1	10276	broad.mit.edu	37	10	5496313	5496313	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr10:5496313G>C	uc001iia.2	+	9	992	c.854G>C	c.(853-855)AGA>ACA	p.R285T	NET1_uc010qar.1_Missense_Mutation_p.R104T|NET1_uc001iib.2_Missense_Mutation_p.R231T|NET1_uc010qas.1_Missense_Mutation_p.R104T	NM_001047160	NP_001040625	Q7Z628	ARHG8_HUMAN	neuroepithelial cell transforming gene 1 isoform	285	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of cell growth|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	Rho guanyl-nucleotide exchange factor activity			breast(1)	1						CAGGATCCAAGAGTCCAAGAC	0.453000													8	23					0	0	0	0
SFMBT2	57713	broad.mit.edu	37	10	7412287	7412287	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr10:7412287C>G	uc009xio.1	-	3	242	c.151G>C	c.(151-153)GAA>CAA	p.E51Q	SFMBT2_uc001ijn.1_Missense_Mutation_p.E51Q|SFMBT2_uc010qay.1_Missense_Mutation_p.E51Q|SFMBT2_uc001ijo.1_Missense_Mutation_p.E51Q	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	51	MBT 1.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						CCTGTCTCTTCCAAATATTCT	0.438000													13	50					0	0	0	0
CELF2	10659	broad.mit.edu	37	10	11299820	11299820	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr10:11299820G>A	uc001iki.3	+	5	594	c.502G>A	c.(502-504)GAT>AAT	p.D168N	CELF2_uc010qbi.1_5'UTR|CELF2_uc010qbj.1_Missense_Mutation_p.D168N|CELF2_uc001ikk.2_Missense_Mutation_p.D175N|CELF2_uc001ikl.3_Missense_Mutation_p.D175N|CELF2_uc010qbk.1_RNA|CELF2_uc010qbl.1_Missense_Mutation_p.D144N|CELF2_uc010qbm.1_5'UTR|CELF2_uc001iko.3_Missense_Mutation_p.D144N|CELF2_uc001ikp.3_Missense_Mutation_p.D144N|CELF2_uc010qbn.1_Missense_Mutation_p.D152N|CELF2_uc009xiw.1_3'UTR|CELF2_uc010qbo.1_Missense_Mutation_p.D57N|CELF2_uc010qbp.1_5'UTR	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2	168	Necessary for RNA-binding, TNNT2 exon 5 and NMDA R1 exon 21 inclusion.|RRM 2.				mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						CCGGGGACCTGATGGGCTGAG	0.512000													12	42					0	0	0	0
LGI1	9211	broad.mit.edu	37	10	95557087	95557087	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr10:95557087C>G	uc001kjc.3	+	8	1537	c.1201C>G	c.(1201-1203)CTG>GTG	p.L401V	LGI1_uc010qnv.1_Missense_Mutation_p.L353V|LGI1_uc001kjd.3_Intron|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_Intron	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	401	EAR 4.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				TCATTTAATTCTGTCTAGTAG	0.428000													9	35					0	0	0	0
RPLP0P2	113157	broad.mit.edu	37	11	61404766	61404766	+	Silent	SNP	C	T	T	rs75153210	by1000genomes	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr11:61404766C>T	uc001nrz.1	+	5	1370	c.615C>T	c.(613-615)GAC>GAT	p.D205D		NR_002775				SubName: Full=cDNA FLJ51469, highly similar to 60S acidic ribosomal protein P0;												0						AAGTGCTTGACATCACAGAGG	0.562000													7	21					0	0	0	0
SPTBN2	6712	broad.mit.edu	37	11	66456268	66456268	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr11:66456268G>A	uc001ojd.2	-	30	6159	c.6087C>T	c.(6085-6087)CTC>CTT	p.L2029L	SPTBN2_uc001ojc.1_5'Flank	NM_006946	NP_008877	O15020	SPTN2_HUMAN	spectrin, beta, non-erythrocytic 2	2029	Spectrin 17.				actin filament capping|axon guidance|cell death|vesicle-mediated transport	cytosol|spectrin	actin binding|structural constituent of cytoskeleton			large_intestine(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCTGGCTGCAGAGCCAGGCCT	0.607000													7	18					0	0	0	0
KRT75	9119	broad.mit.edu	37	12	52818394	52818394	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr12:52818394G>A	uc001saj.2	-	9	1585	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F		NM_004693	NP_004684	O95678	K2C75_HUMAN	keratin 75	521	Tail.					keratin filament	structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.192)		TGGTGGCACTGAATCCAGAAC	0.612000													41	162					0	0	0	0
ZC3H13	23091	broad.mit.edu	37	13	46619638	46619638	+	Nonsense_Mutation	SNP	G	C	C			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr13:46619638G>C	uc010tfw.1	-	1	11	c.5C>G	c.(4-6)TCA>TGA	p.S2*	ZC3H13_uc001vas.1_Nonsense_Mutation_p.S2*|ZC3H13_uc001vat.1_Nonsense_Mutation_p.S2*	NM_015070	NP_055885	Q5T200	ZC3HD_HUMAN	zinc finger CCCH-type containing 13	2							nucleic acid binding|zinc ion binding			ovary(1)|lung(1)	2		Lung NSC(96;7.26e-05)|Breast(56;0.000118)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;4.18e-05)		TCTAATTTTTGACATTTTGTA	0.383000													18	53					0	0	0	0
RB1	5925	broad.mit.edu	37	13	48947540	48947540	+	Splice_Site	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr13:48947540G>A	uc001vcb.2	+	12	1294	c.1128_splice	c.e12-1	p.R376_splice	RB1_uc010act.1_Splice_Site_p.R77_splice	NM_000321	NP_000312	P06400	RB_HUMAN	retinoblastoma 1						androgen receptor signaling pathway|cell cycle arrest|chromatin remodeling|G1 phase of mitotic cell cycle|interspecies interaction between organisms|maintenance of mitotic sister chromatid cohesion|mitotic cell cycle G1/S transition checkpoint|myoblast differentiation|negative regulation of cell growth|negative regulation of protein kinase activity|negative regulation of S phase of mitotic cell cycle|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of mitotic metaphase/anaphase transition|protein localization to chromosome, centromeric region|Ras protein signal transduction|regulation of centromere complex assembly|regulation of cohesin localization to chromatin|regulation of lipid kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|sister chromatid biorientation	chromatin|PML body|Rb-E2F complex|SWI/SNF complex	androgen receptor binding|DNA binding|kinase binding|phosphoprotein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription factor binding|ubiquitin protein ligase binding	p.?(6)		lung(94)|eye(89)|central_nervous_system(47)|bone(22)|breast(21)|urinary_tract(17)|haematopoietic_and_lymphoid_tissue(14)|ovary(10)|prostate(9)|soft_tissue(8)|skin(7)|endometrium(5)|cervix(3)|liver(3)|salivary_gland(2)|stomach(2)|oesophagus(1)|adrenal_gland(1)|kidney(1)|gastrointestinal_tract_(site_indeterminate)(1)|pituitary(1)	358		all_cancers(8;6.9e-71)|all_epithelial(8;4.61e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;1.51e-09)|Lung NSC(96;7.03e-07)|Breast(56;1.53e-05)|Prostate(109;0.000493)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(2;9.98e-18)|LUSC - Lung squamous cell carcinoma(3;0.013)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ATCCCCTCTAGGACTGTTATG	0.299000		6	D|Mis|N|F|S		retinoblastoma|sarcoma|breast|small cell lung	retinoblastoma|sarcoma|breast|small cell lung			Hereditary_Retinoblastoma	TCGA GBM(7;6.82e-08)|TSP Lung(12;0.097)|TCGA Ovarian(6;0.080)			17	63					0	0	0	0
DACT1	51339	broad.mit.edu	37	14	59113462	59113462	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr14:59113462G>A	uc001xdw.2	+	4	2285	c.2121G>A	c.(2119-2121)GCG>GCA	p.A707A	DACT1_uc010trv.1_Silent_p.A426A|DACT1_uc001xdx.2_Silent_p.A670A|DACT1_uc010trw.1_Silent_p.A426A	NM_016651	NP_057735	Q9NYF0	DACT1_HUMAN	dapper 1 isoform 1	707					multicellular organismal development|Wnt receptor signaling pathway	cytoplasm|nucleus				large_intestine(2)|lung(2)|ovary(1)	5						TGTACCCCGCGCCTGTGCCTC	0.677000													13	42					0	0	0	0
SYT16	83851	broad.mit.edu	37	14	62547863	62547863	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr14:62547863C>T	uc001xfu.1	+	4	1502	c.1305C>T	c.(1303-1305)TTC>TTT	p.F435F	SYT16_uc010tsd.1_3'UTR|SYT16_uc010tse.1_5'UTR	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	435	C2 1.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CTGTCCGCTTCCGCCTGTACG	0.567000													7	26					0	0	0	0
DLK1	8788	broad.mit.edu	37	14	101200717	101200717	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr14:101200717C>T	uc001yhs.3	+	5	789	c.636C>T	c.(634-636)TGC>TGT	p.C212C	DLK1_uc001yhu.3_Silent_p.C212C	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	212	Extracellular (Potential).|EGF-like 6.				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				TGACCAACTGCGCCAGCAGCC	0.657000													12	38					0	0	0	0
FRMD5	84978	broad.mit.edu	37	15	44166084	44166084	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr15:44166084C>T	uc001ztl.2	-	14	1889	c.1712G>A	c.(1711-1713)TGA>TAA	p.*571*	FRMD5_uc001ztj.1_3'UTR|FRMD5_uc001ztk.1_3'UTR|FRMD5_uc010uef.1_Silent_p.*244*|FRMD5_uc001ztm.2_Silent_p.*244*|FRMD5_uc001ztn.2_Silent_p.*337*	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	571						cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		CATGCCTTCTCAGGTGTCAAT	0.532000													9	14					0	0	0	0
B2M	567	broad.mit.edu	37	15	45003747	45003747	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr15:45003747G>A	uc001zuc.2	+	1	63	c.3G>A	c.(1-3)ATG>ATA	p.M1I	B2M_uc010uek.1_Missense_Mutation_p.M1I|B2M_uc010bdx.1_Missense_Mutation_p.M1I	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	1					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding	p.M1V(2)		ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GGGCCGAGATGTCTCGCTCCG	0.612000													30	42					0	0	0	0
MYO9A	4649	broad.mit.edu	37	15	72208801	72208801	+	Silent	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr15:72208801C>G	uc002atl.3	-	19	3068	c.2595G>C	c.(2593-2595)CTG>CTC	p.L865L	MYO9A_uc010biq.2_Silent_p.L485L|MYO9A_uc002atn.1_Silent_p.L846L	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	865					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						TCAGTCTTGTCAGGTGCTTTA	0.358000													12	9					0	0	0	0
MESDC1	59274	broad.mit.edu	37	15	81294798	81294798	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr15:81294798C>T	uc002bfz.2	+	1	1504	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_022566	NP_072088	Q9H1K6	MESD1_HUMAN	mesoderm development candidate 1	62											0						CCGTGCTCTTCGAGGGCCCCG	0.687000													15	11					0	0	0	0
GEMIN4	50628	broad.mit.edu	37	17	650962	650962	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr17:650962G>C	uc002frs.1	-	2	440	c.321C>G	c.(319-321)ATC>ATG	p.I107M	GEMIN4_uc010vqa.1_Missense_Mutation_p.I107M	NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	107					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TGGTGTGGTTGATGGTGGGGA	0.592000													7	17					0	0	0	0
ZNF594	84622	broad.mit.edu	37	17	5086741	5086741	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr17:5086741C>G	uc010cla.1	-	2	967	c.811G>C	c.(811-813)GAC>CAC	p.D271H		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	271	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TGTCCACAGTCATAACATTCA	0.393000													19	69					0	0	0	0
COX10	1352	broad.mit.edu	37	17	14110529	14110529	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr17:14110529G>A	uc002gof.3	+	7	1535	c.1331G>A	c.(1330-1332)TGA>TAA	p.*444*	COX10_uc010vvs.1_Silent_p.*227*|COX10_uc010vvt.1_Silent_p.*252*	NM_001303	NP_001294	Q12887	COX10_HUMAN	heme A:farnesyltransferase precursor	444					heme a biosynthetic process|heme O biosynthetic process|respiratory chain complex IV assembly	integral to membrane|mitochondrial membrane	protoheme IX farnesyltransferase activity				0		all_lung(20;0.06)|Lung SC(565;0.168)		UCEC - Uterine corpus endometrioid carcinoma (92;0.106)		CCTCCCAGCTGAGAGCACTGG	0.622000													5	13					0	0	0	0
ZNF750	79755	broad.mit.edu	37	17	80790328	80790328	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr17:80790328C>T	uc002kga.2	-	2	314	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	1						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TGAGGAGACTCATTTTCCTCC	0.512000													4	8					0	0	0	0
DTNA	1837	broad.mit.edu	37	18	32400877	32400877	+	Silent	SNP	C	T	T	rs61737438	byFrequency	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr18:32400877C>T	uc010dmn.1	+	8	1000	c.999C>T	c.(997-999)ATC>ATT	p.I333I	DTNA_uc002kxu.2_Silent_p.I333I|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Silent_p.I333I|DTNA_uc002kxw.2_Silent_p.I333I|DTNA_uc002kxx.2_Silent_p.I333I|DTNA_uc010dmj.2_Silent_p.I333I|DTNA_uc002kxz.2_Silent_p.I333I|DTNA_uc002kxy.2_Silent_p.I333I|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Silent_p.I333I|DTNA_uc002kyb.3_Silent_p.I333I|DTNA_uc010dmm.2_Silent_p.I333I|DTNA_uc010xby.1_Silent_p.I83I|DTNA_uc010dmo.2_Silent_p.I15I|DTNA_uc002kyd.3_Silent_p.I15I|DTNA_uc010xbz.1_Silent_p.I15I|DTNA_uc010xca.1_Silent_p.I15I|DTNA_uc002kye.2_Silent_p.I15I	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	333					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TGGCTCACATCGTGTGAGTAT	0.493000													12	41					0	0	0	0
NOTCH3	4854	broad.mit.edu	37	19	15299893	15299893	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr19:15299893C>G	uc002nan.2	-	8	1361	c.1285G>C	c.(1285-1287)GAG>CAG	p.E429Q	NOTCH3_uc002nao.1_Missense_Mutation_p.E429Q	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	429	Extracellular (Potential).|EGF-like 10; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			ACATCGGTCTCACAGCGAGGT	0.642000													17	65					0	0	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52725391	52725391	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr19:52725391C>T	uc002pyp.2	+	13	1717	c.1558C>T	c.(1558-1560)CAC>TAC	p.H520Y	PPP2R1A_uc010ydk.1_Missense_Mutation_p.H465Y|PPP2R1A_uc002pyq.2_Missense_Mutation_p.H341Y	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	520	PP2A subunit C binding.|HEAT 14.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CACCACCAAGCACATGCTACC	0.582000			Mis		clear cell ovarian carcinoma								8	24					0	0	0	0
NLRP13	126204	broad.mit.edu	37	19	56423159	56423159	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr19:56423159G>A	uc010ygg.1	-	5	2049	c.2024C>T	c.(2023-2025)TCA>TTA	p.S675L		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	675							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TAGGCAAAATGAAGAAGCTTG	0.403000													14	49					0	0	0	0
ZFP28	140612	broad.mit.edu	37	19	57066551	57066551	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr19:57066551C>T	uc002qnj.2	+	8	2468	c.2397C>T	c.(2395-2397)CAC>CAT	p.H799H	uc002qnk.1_Intron	NM_020828	NP_065879	Q8NHY6	ZFP28_HUMAN	zinc finger protein 28	799	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0302)		AAATTGGACACCTTAATCAAC	0.373000													26	43					0	0	0	0
BIRC6	57448	broad.mit.edu	37	2	32820175	32820175	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr2:32820175G>A	uc010ezu.2	+	68	13710	c.13576G>A	c.(13576-13578)GAA>AAA	p.E4526K		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4526					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GTCACTTGAAGAAAAATATGT	0.289000													4	12					0	0	0	0
MOBKL1B	55233	broad.mit.edu	37	2	74399789	74399789	+	Silent	SNP	A	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr2:74399789A>G	uc002skh.3	-	2	299	c.105T>C	c.(103-105)ACT>ACC	p.T35T	MOBKL1B_uc002ski.2_Silent_p.T35T	NM_018221	NP_060691	Q9H8S9	MOL1B_HUMAN	Mob4B protein	35					hippo signaling cascade		metal ion binding|protein binding				0						CACTTCCTAGAGTTGCTTCTG	0.398000													17	52					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179499108	179499108	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr2:179499108G>A	uc010zfg.1	-	179	34920	c.34696C>T	c.(34696-34698)CGG>TGG	p.R11566W	TTN_uc010zfh.1_Missense_Mutation_p.R5261W|TTN_uc010zfi.1_Missense_Mutation_p.R5194W|TTN_uc010zfj.1_Missense_Mutation_p.R5069W	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12493							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAAACAACCGAGCTGAGGTC	0.408000													7	17					0	0	0	0
PLCB4	5332	broad.mit.edu	37	20	9376208	9376208	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr20:9376208G>A	uc002wnf.2	+	18	1589	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	PLCB4_uc010gbw.1_Missense_Mutation_p.E485K|PLCB4_uc010gbx.2_Missense_Mutation_p.E485K|PLCB4_uc002wne.2_Missense_Mutation_p.E485K|PLCB4_uc002wnh.2_Missense_Mutation_p.E332K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	485					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GGAAGCTGGAGAATCTGCCTC	0.423000													6	21					0	0	0	0
GATA5	140628	broad.mit.edu	37	20	61048612	61048612	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr20:61048612G>A	uc002ycx.1	-	3	608	c.546C>T	c.(544-546)TTC>TTT	p.F182F		NM_080473	NP_536721	Q9BWX5	GATA5_HUMAN	GATA binding protein 5	182					blood coagulation|intestinal epithelial cell differentiation|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding				0	Breast(26;2.05e-08)		BRCA - Breast invasive adenocarcinoma(19;3.08e-06)			CCTCACCCGGGAACTCCTCCA	0.697000													3	6					0	0	0	0
UROC1	131669	broad.mit.edu	37	3	126226625	126226625	+	Missense_Mutation	SNP	G	A	A	rs34488036	byFrequency	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr3:126226625G>A	uc003eiz.1	-	6	594	c.562C>T	c.(562-564)CGG>TGG	p.R188W	UROC1_uc010hsi.1_Missense_Mutation_p.R188W	NM_144639	NP_653240	Q96N76	HUTU_HUMAN	urocanase domain containing 1 isoform 1	188					histidine catabolic process	cytosol	urocanate hydratase activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.17)		TACTCCGTCCGGGAGGAGTAG	0.542000													22	76					0	0	0	0
NOP14	8602	broad.mit.edu	37	4	2956205	2956205	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr4:2956205C>T	uc003ggj.1	-	4	630	c.558G>A	c.(556-558)CCG>CCA	p.P186P	C4orf10_uc003ggi.1_Intron|NOP14_uc010icp.2_5'Flank|NOP14_uc003ggk.3_Silent_p.P186P|NOP14_uc003ggl.2_Silent_p.P186P|NOP14_uc010icq.1_RNA	NM_003703	NP_003694	P78316	NOP14_HUMAN	probable nucleolar complex protein 14	186					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	mitochondrion|Noc4p-Nop14p complex|small-subunit processome	snoRNA binding			pancreas(1)	1						TCCGGGACTTCGGTTTCTCCC	0.537000													13	53					0	0	0	0
KCNIP4	80333	broad.mit.edu	37	4	20734306	20734306	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr4:20734306G>A	uc003gqe.2	-	6	673	c.589C>T	c.(589-591)CAG>TAG	p.Q197*	KCNIP4_uc003gqf.1_Nonsense_Mutation_p.Q193*|KCNIP4_uc003gqg.1_Nonsense_Mutation_p.Q152*|KCNIP4_uc003gqh.1_Nonsense_Mutation_p.Q189*|KCNIP4_uc003gqi.1_Nonsense_Mutation_p.Q152*|PACRGL_uc003gpu.2_Intron|PACRGL_uc003gpx.3_Intron|PACRGL_uc003gpw.2_Intron|KCNIP4_uc010iel.2_Nonsense_Mutation_p.Q194*|KCNIP4_uc003gqd.3_Nonsense_Mutation_p.Q177*	NM_147182	NP_671711	Q6PIL6	KCIP4_HUMAN	Kv channel interacting protein 4 isoform 3	214	EF-hand 4.					plasma membrane	calcium ion binding|potassium channel activity|protein binding|voltage-gated ion channel activity				0		Breast(46;0.134)				ATTCCTACCTGAAAAAATGTT	0.368000													6	21					0	0	0	0
LNX1	84708	broad.mit.edu	37	4	54327109	54327109	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr4:54327109G>A	uc003hag.3	-	11	2408	c.2152C>T	c.(2152-2154)CTA>TTA	p.L718L	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Silent_p.L622L|LNX1_uc003hah.3_RNA	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	718	PDZ 4.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			ACAATAGTTAGAGTAATTCTT	0.358000													12	42					0	0	0	0
RPP40	10799	broad.mit.edu	37	6	5002435	5002435	+	Silent	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr6:5002435C>G	uc003mwl.2	-	2	203	c.168G>C	c.(166-168)CTG>CTC	p.L56L	uc003mwn.1_5'Flank|RPP40_uc003mwm.2_Silent_p.L56L	NM_006638	NP_006629	O75818	RPP40_HUMAN	ribonuclease P 40kDa subunit	56					tRNA processing	nucleolar ribonuclease P complex	protein binding|ribonuclease P activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0895)				CCAGGTTTTTCAGTTCTTCCG	0.363000													9	31					0	0	0	0
BAT2	7916	broad.mit.edu	37	6	31600743	31600743	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr6:31600743G>A	uc003nvb.3	+	16	4542	c.4293G>A	c.(4291-4293)AGG>AGA	p.R1431R	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Silent_p.R1431R	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	1431	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						GCGACAAGAGGAGCTGGCCCT	0.587000													5	8					0	0	0	0
VARS	7407	broad.mit.edu	37	6	31759487	31759487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr6:31759487G>A	uc003nxe.2	-	8	1423	c.1000C>T	c.(1000-1002)CGA>TGA	p.R334*	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	334					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	AAGACACCTCGGGGATTTGCT	0.582000													21	71					0	0	0	0
LPA	4018	broad.mit.edu	37	6	161022029	161022029	+	Missense_Mutation	SNP	C	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr6:161022029C>A	uc003qtl.2	-	20	3167	c.3047G>T	c.(3046-3048)CGA>CTA	p.R1016L		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3524	Kringle 31.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATCTGAGCATCGTGTCAGGTT	0.498000													8	31					0.00307968	0.00312856	1	0
PMS2CL	441194	broad.mit.edu	37	7	6777261	6777261	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr7:6777261C>T	uc011jxb.1	+	5	1315	c.541C>T	c.(541-543)CAG>TAG	p.Q181*	PMS2CL_uc003squ.2_RNA|PMS2CL_uc003sqv.1_RNA					SubName: Full=cDNA FLJ60281, highly similar to PMS1 protein homolog 2;												0						GGTTTTGCCTCAGCCAACTAA	0.403000													13	45					0	0	0	0
Unknown	0	broad.mit.edu	37	7	39894476	39894476	+	RNA	SNP	G	C	C			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr7:39894476G>C	uc003thg.2	-	1		c.384C>G								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		TTCATAGATAGAATTGGAGGT	0.398000													16	56					0	0	0	0
EGFR	1956	broad.mit.edu	37	7	55214348	55214348	+	Silent	SNP	C	T	T	rs2072454	byFrequency	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr7:55214348C>T	uc003tqk.2	+	4	720	c.474C>T	c.(472-474)AAC>AAT	p.N158N	EGFR_uc003tqh.2_Silent_p.N158N|EGFR_uc003tqi.2_Silent_p.N158N|EGFR_uc003tqj.2_Silent_p.N158N|EGFR_uc010kzg.1_Intron|EGFR_uc011kco.1_Silent_p.N105N	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	158	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)|p.N158N(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CCCTGTGCAACGTGGAGAGCA	0.547000		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			12	40					0	0	0	0
KIAA1324L	222223	broad.mit.edu	37	7	86556203	86556203	+	Silent	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr7:86556203G>A	uc011kha.1	-	9	1304	c.1119C>T	c.(1117-1119)CCC>CCT	p.P373P	KIAA1324L_uc003uif.1_Silent_p.P133P|KIAA1324L_uc011kgz.1_Silent_p.P259P|KIAA1324L_uc003uie.2_Silent_p.P206P	NM_001142749	NP_001136221	A8MWY0	K132L_HUMAN	hypothetical protein LOC222223 isoform 1	373	Extracellular (Potential).					integral to membrane				ovary(6)|skin(1)	7	Esophageal squamous(14;0.0058)					GGCAGATTTTGGGCTCTATCC	0.378000													18	64					0	0	0	0
TOX	9760	broad.mit.edu	37	8	59764239	59764239	+	Silent	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr8:59764239C>G	uc003xtw.1	-	4	758	c.537G>C	c.(535-537)CTG>CTC	p.L179L		NM_014729	NP_055544	O94900	TOX_HUMAN	thymus high mobility group box protein TOX	179						nucleus	DNA binding			kidney(2)|lung(1)|skin(1)	4		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				TAATGGTAGTCAGCTGGCCAT	0.527000													16	59					0	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110412325	110412325	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr8:110412325G>A	uc003yne.2	+	13	1137	c.1033G>A	c.(1033-1035)GAG>AAG	p.E345K		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	345	Extracellular (Potential).|IPT/TIG 3.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCTGAAGCTTGAGGTGTGGAA	0.418000										HNSCC(38;0.096)			16	53					0	0	0	0
C9orf72	203228	broad.mit.edu	37	9	27560286	27560286	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr9:27560286G>A	uc003zqq.2	-	6	774	c.677C>T	c.(676-678)TCA>TTA	p.S226L		NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	226										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)		TTGCAAGTGTGAGCTGATGGC	0.323000													6	19					0	0	0	0
LOC442421	442421	broad.mit.edu	37	9	66500697	66500697	+	RNA	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr9:66500697C>G	uc004aed.1	+	3		c.790C>G								Homo sapiens similar to prostaglandin E receptor 4, subtype EP4; PGE receptor, EP4 subtype; prostaglandin E2 receptor, mRNA (cDNA clone IMAGE:5288780).												0						TTCAGCACCCCTGGGCCAGGC	0.672000													2	2					0	0	0	0
GLE1	2733	broad.mit.edu	37	9	131285011	131285011	+	Missense_Mutation	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr9:131285011C>T	uc004bvj.2	+	4	611	c.497C>T	c.(496-498)TCT>TTT	p.S166F	GLE1_uc004bvi.2_Missense_Mutation_p.S166F|GLE1_uc010myd.2_Intron	NM_001003722	NP_001003722	Q53GS7	GLE1_HUMAN	GLE1 RNA export mediator homolog isoform 1	166	Potential.				poly(A)+ mRNA export from nucleus|protein transport|transmembrane transport	cytoplasm|nuclear pore	protein binding				0						GAGATGGCATCTGAACAACTG	0.448000													11	38					0	0	0	0
CNKSR2	22866	broad.mit.edu	37	X	21550065	21550065	+	Silent	SNP	C	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:21550065C>T	uc004czx.1	+	11	1219	c.1183C>T	c.(1183-1185)CTG>TTG	p.L395L	CNKSR2_uc004czw.2_Silent_p.L395L|CNKSR2_uc011mjn.1_Silent_p.L346L|CNKSR2_uc011mjo.1_Silent_p.L395L|CNKSR2_uc004czy.2_Silent_p.L17L	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	395	DUF1170.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						AAATTCATTTCTGGATCAGGA	0.378000													15	34					0	0	0	0
ALAS2	212	broad.mit.edu	37	X	55047576	55047576	+	Missense_Mutation	SNP	C	G	G			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:55047576C>G	uc004dua.3	-	5	685	c.547G>C	c.(547-549)GAG>CAG	p.E183Q	ALAS2_uc004dub.3_Missense_Mutation_p.E170Q|ALAS2_uc004dud.3_Missense_Mutation_p.E146Q	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	183					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	ACAGATGCCTCAGAGAAATGT	0.512000													10	25					0	0	0	0
OCRL	4952	broad.mit.edu	37	X	128709136	128709136	+	Missense_Mutation	SNP	G	A	A			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:128709136G>A	uc004euq.2	+	16	1787	c.1622G>A	c.(1621-1623)CGA>CAA	p.R541Q	OCRL_uc004eur.2_Missense_Mutation_p.R541Q	NM_000276	NP_000267	Q01968	OCRL_HUMAN	phosphatidylinositol polyphosphate 5-phosphatase	541					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	clathrin-coated vesicle|cytosol|early endosome|Golgi stack|Golgi-associated vesicle	GTPase activator activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|protein binding			lung(2)|ovary(1)|kidney(1)	4						GTGGATGAACGAAGGTACCGG	0.408000													6	20					0	0	0	0
IDH3G	3421	broad.mit.edu	37	X	153053583	153053583	+	Missense_Mutation	SNP	G	C	C			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:153053583G>C	uc004fip.2	-	6	540	c.354C>G	c.(352-354)ATC>ATG	p.I118M	IDH3G_uc004fio.2_Missense_Mutation_p.I60M|IDH3G_uc004fiq.2_Missense_Mutation_p.I118M|IDH3G_uc010num.2_Missense_Mutation_p.I60M|IDH3G_uc004fir.2_Missense_Mutation_p.I60M|IDH3G_uc004fit.1_Missense_Mutation_p.I118M|IDH3G_uc004fis.2_Missense_Mutation_p.I60M|IDH3G_uc004fiu.2_5'Flank	NM_004135	NP_004126	P51553	IDH3G_HUMAN	isocitrate dehydrogenase 3 (NAD+) gamma isoform	118					carbohydrate metabolic process|isocitrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix|nucleolus	ATP binding|isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0	all_hematologic(71;4.25e-06)|all_lung(58;3.83e-05)|Lung NSC(58;5.54e-05)|Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	GGTTGGTTTCGATGTTGCCTA	0.597000													48	164					0	0	0	0
TYSND1	219743	broad.mit.edu	37	10	71905929	71905931	+	In_Frame_Del	DEL	CAG	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr10:71905929_71905931delCAG	uc001jqr.2	-	1	566_568	c.412_414delCTG	c.(412-414)CTGdel	p.L138del	TYSND1_uc001jqq.2_Intron|TYSND1_uc001jqs.2_In_Frame_Del_p.L138del|TYSND1_uc001jqt.2_Intron	NM_173555	NP_775826	Q2T9J0	TYSD1_HUMAN	trypsin domain containing 1 isoform a	138					proteolysis	peroxisome	serine-type endopeptidase activity			large_intestine(1)	1						CCGGGCAGCTCAGCAGCAGCAGC	0.739													---	---	---							
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													---	---	---							
Unknown	0	broad.mit.edu	37	16	34336243	34336244	+	IGR	DEL	TA	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr16:34336243_34336244delTA								MIR1826 (370651 upstream) : UBE2MP1 (67558 downstream)																							TCGTGTGGACTATATTGATAAA	0.342													---	---	---							
Unknown	0	broad.mit.edu	37	17	6563152	6563152	+	IGR	DEL	C	-	-	rs146987408	by1000genomes	TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr17:6563152delC								C17orf100 (6535 upstream) : SLC13A5 (24889 downstream)																							ctctctctctcctctctctct	0.224													---	---	---							
Unknown	0	broad.mit.edu	37	2	96390570	96390572	+	IGR	DEL	CAC	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr2:96390570_96390572delCAC								TRIM43 (125103 upstream) : LOC729234 (285727 downstream)																							ccaccaccatcaccaccaccacc	0.049													---	---	---							
Unknown	0	broad.mit.edu	37	21	44755961	44755961	+	IGR	DEL	C	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr21:44755961delC								CRYAA (163048 upstream) : SIK1 (78437 downstream)																							accatcaccaccatcaccacc	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	5	767654	767657	+	IGR	DEL	AGAA	-	-	rs72246159		TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr5:767654_767657delAGAA								TPPP (74144 upstream) : ZDHHC11 (28063 downstream)																							GAGGAAGAGGAGAAAGAGAGCATC	0.588													---	---	---							
SLC25A2	83884	broad.mit.edu	37	5	140683301	140683302	+	Frame_Shift_Ins	INS	-	T	T			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chr5:140683301_140683302insT	uc003ljf.2	-	1	311_312	c.131_132insA	c.(130-132)TACfs	p.Y44fs		NM_031947	NP_114153	Q9BXI2	ORNT2_HUMAN	solute carrier family 25 member 2	44	Solcar 1.				mitochondrial ornithine transport|urea cycle	integral to membrane|mitochondrial inner membrane	L-ornithine transmembrane transporter activity			ovary(1)	1		all_lung(500;0.000249)|Lung NSC(810;0.0011)|Ovarian(839;0.00556)|Breast(839;0.0173)|all_hematologic(541;0.152)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.00204)	L-Ornithine(DB00129)	TGAGGCCCTTGTACAGGTCAGG	0.604													---	---	---							
Unknown	0	broad.mit.edu	37	X	134748987	134748987	+	IGR	DEL	T	-	-	rs66464343		TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:134748987delT								DDX26B (32528 upstream) : CT45A1 (98198 downstream)																							TCAATCATAGTTCATACTATT	0.433													---	---	---							
HCFC1	3054	broad.mit.edu	37	X	153219875	153219877	+	In_Frame_Del	DEL	GTG	-	-			TCGA-DQ-7594-01A-11D-2229-08	TCGA-DQ-7594-10D-01D-2229-08									Somatic	Phase_I	Capture				Illumina GAIIx	92e689c0-08ab-472b-aedc-6344fedcbbc0	2e374774-88d9-47db-8beb-ac153d352653	g.chrX:153219875_153219877delGTG	uc004fjp.2	-	17	4501_4503	c.3973_3975delCAC	c.(3973-3975)CACdel	p.H1325del		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1325	HCF repeat 6.				cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TGCCCGTCTCGTGGGTCTCGCAT	0.685													---	---	---							
