Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA12	26154	broad.mit.edu	37	2	215919366	215919366	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215919366	215919366	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215919366	215919366	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48349715	48349715	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48563896	48563896	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48349715	48349715	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48563896	48563896	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48349715	48349715	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48563896	48563896	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66873505	66873505	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66873505	66873505	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66873505	66873505	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87037292	87037292	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87037292	87037292	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87037292	87037292	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21964926	21964926	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21964926	21964926	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21964926	21964926	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	21965115	21965115	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44078697	44078697	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44078697	44078697	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44078697	44078697	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73150991	73150991	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD11	83451	broad.mit.edu	37	7	73150991	73150991	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35580233	35580233	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35580233	35580233	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20492313	20492313	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20492313	20492313	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTB	60	broad.mit.edu	37	7	5567249	5567249	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTB	60	broad.mit.edu	37	7	5567249	5567249	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236908017	236908017	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236908017	236908017	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236908017	236908017	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106578998	106578998	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106578998	106578998	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106578998	106578998	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107275880	107275880	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64747521	64747521	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64747521	64747521	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64747521	64747521	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49168127	49168127	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49168127	49168127	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49168127	49168127	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878416	111878416	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878416	111878416	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878416	111878416	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236716111	236716111	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236716111	236716111	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88200260	88200260	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88200260	88200260	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88200260	88200260	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62301532	62301544	+	Frame_Shift_Del	DEL	CTCATCATCCCCG	-	-	rs117532364	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62301532	62301544	+	Frame_Shift_Del	DEL	CTCATCATCCCCG	-	-	rs117532364	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40745964	40745964	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40745964	40745964	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5135859	5135859	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1	56052	broad.mit.edu	37	16	5135859	5135859	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183960694	183960694	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG3	10195	broad.mit.edu	37	3	183960694	183960694	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56245980	56245980	+	Intron	SNP	A	T	T	rs140639907	by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMN	81693	broad.mit.edu	37	14	103390271	103390271	+	Splice_Site	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMN	81693	broad.mit.edu	37	14	103390271	103390271	+	Splice_Site	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112604723	112604723	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112604723	112604723	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC1	64682	broad.mit.edu	37	2	112604723	112604723	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4777189	4777189	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4777189	4777189	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS3	124401	broad.mit.edu	37	16	4777189	4777189	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36429517	36429517	+	5'UTR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36429517	36429517	+	5'UTR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANLN	54443	broad.mit.edu	37	7	36429517	36429517	+	5'UTR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4B1	10717	broad.mit.edu	37	1	114438396	114438396	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4B1	10717	broad.mit.edu	37	1	114438396	114438396	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP4B1	10717	broad.mit.edu	37	1	114438396	114438396	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APIP	51074	broad.mit.edu	37	11	34904742	34904742	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APIP	51074	broad.mit.edu	37	11	34904833	34904833	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APIP	51074	broad.mit.edu	37	11	34904742	34904742	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APIP	51074	broad.mit.edu	37	11	34904833	34904833	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APIP	51074	broad.mit.edu	37	11	34904833	34904833	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APRT	353	broad.mit.edu	37	16	88876676	88876681	+	Intron	DEL	TGAGCC	-	-	rs8191488		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156928750	156928750	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156928750	156928750	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156928750	156928750	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6	84100	broad.mit.edu	37	3	97516812	97516812	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6	84100	broad.mit.edu	37	3	97516812	97516812	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6	84100	broad.mit.edu	37	3	97516812	97516812	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC6	93436	broad.mit.edu	37	19	19154841	19154841	+	Silent	SNP	C	T	T	rs143674751	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155452250	155452250	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155452250	155452250	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155452250	155452250	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97486051	97486051	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97486051	97486051	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97486051	97486051	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7045360	7045360	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7045360	7045360	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATN1	1822	broad.mit.edu	37	12	7045360	7045360	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160063812	160063812	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138832284	138832284	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138832284	138832284	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138832284	138832284	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110781292	110781292	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A2	488	broad.mit.edu	37	12	110781292	110781292	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B3	148229	broad.mit.edu	37	19	1807188	1807188	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7	6314	broad.mit.edu	37	3	63898773	63898773	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70250923	70250923	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70250923	70250923	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70250923	70250923	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11047567	11047567	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49459574	49459574	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49459574	49459574	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAX	581	broad.mit.edu	37	19	49459574	49459574	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75263784	75263784	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75263784	75263784	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75263784	75263784	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58946004	58946004	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58946004	58946004	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS3	54828	broad.mit.edu	37	17	58946004	58946004	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548362	165548362	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548362	165548362	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548362	165548362	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNF	627	broad.mit.edu	37	11	27720908	27720908	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79793823	79793823	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79793823	79793823	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2K	55589	broad.mit.edu	37	4	79793823	79793823	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96044877	96044877	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96044877	96044877	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96044877	96044877	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140453193	140453193	+	Missense_Mutation	SNP	T	C	C	rs121913370		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41267812	41267812	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41267812	41267812	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192686	50192686	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192686	50192686	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD1	23774	broad.mit.edu	37	22	50192686	50192686	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSPRY	54836	broad.mit.edu	37	9	116124770	116124770	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56381763	56381763	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56381763	56381763	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56381763	56381763	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76224358	76224358	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76224358	76224358	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76224358	76224358	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101953881	101953881	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101953881	101953881	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf70	85016	broad.mit.edu	37	11	101953881	101953881	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf88	399949	broad.mit.edu	37	11	111385769	111385769	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf88	399949	broad.mit.edu	37	11	111385769	111385769	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64678484	64678484	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64678484	64678484	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64678484	64678484	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf56	115749	broad.mit.edu	37	12	64697602	64697602	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77845256	77845256	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77845256	77845256	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77845256	77845256	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf45	89927	broad.mit.edu	37	16	15677017	15677017	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf45	89927	broad.mit.edu	37	16	15677017	15677017	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf45	89927	broad.mit.edu	37	16	15677017	15677017	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19641032	19641032	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19641032	19641032	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19641032	19641032	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf91	283951	broad.mit.edu	37	16	1479113	1479114	+	Intron	INS	-	G	G	rs147810748	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf123	54987	broad.mit.edu	37	1	53686334	53686334	+	5'Flank	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf123	54987	broad.mit.edu	37	1	53686334	53686334	+	5'Flank	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf213	148898	broad.mit.edu	37	1	23698080	23698080	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf213	148898	broad.mit.edu	37	1	23698080	23698080	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf213	148898	broad.mit.edu	37	1	23698080	23698080	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60499418	60499418	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60505791	60505791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60499418	60499418	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60505791	60505791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60499418	60499418	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60505791	60505791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31874063	31874063	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31874063	31874063	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf4	25980	broad.mit.edu	37	20	34828224	34828229	+	In_Frame_Del	DEL	TGGAGA	-	-	rs138100023		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf4	25980	broad.mit.edu	37	20	34828224	34828229	+	In_Frame_Del	DEL	TGGAGA	-	-	rs138100023		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf4	25980	broad.mit.edu	37	20	34828224	34828229	+	In_Frame_Del	DEL	TGGAGA	-	-	rs138100023		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46122352	46122352	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46122352	46122352	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46122352	46122352	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf36	388886	broad.mit.edu	37	22	24985872	24985872	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf36	388886	broad.mit.edu	37	22	24985872	24985872	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32548011	32548011	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32548011	32548011	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200824033	200824033	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200824033	200824033	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf47	79568	broad.mit.edu	37	2	200824033	200824033	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74042320	74042320	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74042320	74042320	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74042320	74042320	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40193013	40193013	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42971544	42971544	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf25	79020	broad.mit.edu	37	7	42971544	42971544	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA2	760	broad.mit.edu	37	8	86386052	86386052	+	Intron	DEL	T	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140870387	140870387	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140919511	140919511	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140870387	140870387	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140919511	140919511	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140870387	140870387	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140919511	140919511	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480642	181480642	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480642	181480642	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480642	181480642	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49075761	49075761	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49086776	49086776	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49075761	49075761	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49086776	49086776	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49075761	49075761	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49086776	49086776	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65027117	65027117	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65027117	65027117	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG4	27092	broad.mit.edu	37	17	65027117	65027117	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2966466	2966467	+	Intron	DEL	GT	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40852233	40852233	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40852233	40852233	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD6	84674	broad.mit.edu	37	5	40852233	40852233	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89435211	89435211	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89435211	89435211	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89435211	89435211	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC144C	348254	broad.mit.edu	37	17	20245546	20245546	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76889471	76889471	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76889471	76889471	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76889471	76889471	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64025820	64025821	+	Intron	INS	-	TAAA	TAAA	rs144628903	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC55	84081	broad.mit.edu	37	17	28443847	28443847	+	5'UTR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119916949	119916949	+	Missense_Mutation	SNP	G	A	A	rs144234053		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119916949	119916949	+	Missense_Mutation	SNP	G	A	A	rs144234053		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC60	160777	broad.mit.edu	37	12	119916949	119916949	+	Missense_Mutation	SNP	G	A	A	rs144234053		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358453	66358453	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358453	66358453	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC87	55231	broad.mit.edu	37	11	66358453	66358453	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55546020	55546020	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55546020	55546020	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88A	55704	broad.mit.edu	37	2	55546020	55546020	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90B	60492	broad.mit.edu	37	11	82985720	82985720	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90B	60492	broad.mit.edu	37	11	82985720	82985720	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC90B	60492	broad.mit.edu	37	11	82985720	82985720	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2480922	2480922	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2480922	2480922	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNF	899	broad.mit.edu	37	16	2480922	2480922	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNG2	901	broad.mit.edu	37	4	78081871	78081871	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNG2	901	broad.mit.edu	37	4	78081871	78081871	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNG2	901	broad.mit.edu	37	4	78081871	78081871	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35201738	35201738	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD59	966	broad.mit.edu	37	11	33743968	33743968	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD59	966	broad.mit.edu	37	11	33743968	33743968	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD59	966	broad.mit.edu	37	11	33743968	33743968	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507264	14507264	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507289	14507289	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507264	14507264	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507289	14507289	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507264	14507264	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14507289	14507289	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66430157	66430157	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66430157	66430157	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180044335	180044335	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN1	1068	broad.mit.edu	37	18	580703	580703	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN3	1070	broad.mit.edu	37	5	89695226	89695226	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN3	1070	broad.mit.edu	37	5	89695226	89695226	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETN3	1070	broad.mit.edu	37	5	89695226	89695226	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61982028	61982028	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA4	1137	broad.mit.edu	37	20	61982028	61982028	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46837632	46837633	+	Intron	DEL	CA	-	-	rs59649961		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184076691	184076691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184076691	184076691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184076691	184076691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245494	73245494	+	5'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245494	73245494	+	5'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245494	73245494	+	5'UTR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58580600	58580600	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58580600	58580600	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58580600	58580600	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17298312	17298312	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17298312	17298312	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17298312	17298312	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100061923	100061923	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7851748	7851748	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7851748	7851748	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7851748	7851748	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51261203	51261203	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51261203	51261203	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51261203	51261203	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG1	9382	broad.mit.edu	37	17	71193340	71193340	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG1	9382	broad.mit.edu	37	17	71193340	71193340	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG1	9382	broad.mit.edu	37	17	71193340	71193340	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46056606	46056606	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46056606	46056606	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG3	83548	broad.mit.edu	37	13	46056606	46056606	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33138503	33138503	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33138503	33138503	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33138503	33138503	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70859806	70859806	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70859806	70859806	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70859806	70859806	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111077486	111077486	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111077486	111077486	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74806913	74806913	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3BP	10087	broad.mit.edu	37	5	74806913	74806913	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228109739	228109739	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228109739	228109739	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228109739	228109739	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48610496	48610496	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48610496	48610496	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48610496	48610496	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP110	9738	broad.mit.edu	37	16	19553224	19553224	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP110	9738	broad.mit.edu	37	16	19553224	19553224	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP110	9738	broad.mit.edu	37	16	19553224	19553224	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596502	148596502	+	Silent	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596502	148596502	+	Silent	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596502	148596502	+	Silent	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB4	80315	broad.mit.edu	37	5	173383198	173383198	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB4	80315	broad.mit.edu	37	5	173383198	173383198	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB4	80315	broad.mit.edu	37	5	173383198	173383198	+	3'UTR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542708	211542708	+	Nonstop_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542708	211542708	+	Nonstop_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211542708	211542708	+	Nonstop_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3L	54973	broad.mit.edu	37	1	1250237	1250237	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF3L	54973	broad.mit.edu	37	1	1250237	1250237	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L4	148327	broad.mit.edu	37	1	153945572	153945572	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L4	148327	broad.mit.edu	37	1	153945572	153945572	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L4	148327	broad.mit.edu	37	1	153945572	153945572	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76254547	76254547	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76254547	76254547	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHBP	1393	broad.mit.edu	37	5	76254547	76254547	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43912048	43912048	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43912048	43912048	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43912048	43912048	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876054	2876054	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876054	2876054	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876054	2876054	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246694	113246694	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246694	113246694	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113246694	113246694	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP2	10106	broad.mit.edu	37	12	58223088	58223088	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP2	10106	broad.mit.edu	37	12	58223088	58223088	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP2	10106	broad.mit.edu	37	12	58223088	58223088	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156755057	156755057	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156755057	156755057	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156755057	156755057	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83126620	83126620	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83126620	83126620	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC1	1538	broad.mit.edu	37	X	83126620	83126620	+	Intron	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99447120	99447120	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99447120	99447120	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A43	64816	broad.mit.edu	37	7	99447120	99447120	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87516281	87516281	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87516281	87516281	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBF4	10926	broad.mit.edu	37	7	87516281	87516281	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32678510	32678510	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2B	149069	broad.mit.edu	37	1	32678510	32678510	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110555766	110555766	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9572801	9572801	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9572801	9572801	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX12	440081	broad.mit.edu	37	12	9577096	9577096	+	Intron	SNP	A	C	C	rs138314342	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX19A	55308	broad.mit.edu	37	16	70390189	70390190	+	Intron	DEL	TC	-	-			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47839551	47839551	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197576259	197576259	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197576259	197576259	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197576259	197576259	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNA5	1687	broad.mit.edu	37	7	24756942	24756942	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNA5	1687	broad.mit.edu	37	7	24756942	24756942	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNA5	1687	broad.mit.edu	37	7	24756942	24756942	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24112544	24112544	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS2	10202	broad.mit.edu	37	14	24112544	24112544	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169938312	169938312	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169938312	169938312	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS9	10170	broad.mit.edu	37	2	169938312	169938312	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125470823	125470823	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125470823	125470823	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125470823	125470823	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57651094	57651094	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57651094	57651094	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57651094	57651094	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95598046	95598046	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95598046	95598046	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DICER1	23405	broad.mit.edu	37	14	95598046	95598046	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107845160	107845160	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107845160	107845160	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKK2	27123	broad.mit.edu	37	4	107845160	107845160	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46283154	46283154	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMPK	1760	broad.mit.edu	37	19	46283154	46283154	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124323233	124323233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124323233	124323233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124323233	124323233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38790666	38790666	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38790666	38790666	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38790666	38790666	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA1	3301	broad.mit.edu	37	9	33026680	33026680	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA1	3301	broad.mit.edu	37	9	33026680	33026680	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186301672	186301672	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183593847	183593847	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC10	54431	broad.mit.edu	37	2	183593847	183593847	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132184797	132184797	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132184964	132184964	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132196902	132196902	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132184797	132184797	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132184964	132184964	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132196902	132196902	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132184797	132184797	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56217256	56217256	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56217358	56217358	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56217256	56217256	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56217358	56217358	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56217256	56217256	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22048380	22048380	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22048380	22048380	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22048380	22048380	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40140658	40140658	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40140658	40140658	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40140658	40140658	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58196438	58196438	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51297694	51297694	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPCD	25911	broad.mit.edu	37	10	103360902	103360902	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPCD	25911	broad.mit.edu	37	10	103360902	103360902	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPCD	25911	broad.mit.edu	37	10	103360902	103360902	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L4	286148	broad.mit.edu	37	8	95738658	95738658	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L4	286148	broad.mit.edu	37	8	95738658	95738658	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29046859	29046859	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29046859	29046859	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTN	11034	broad.mit.edu	37	20	17581487	17581487	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTN	11034	broad.mit.edu	37	20	17581487	17581487	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSTN	11034	broad.mit.edu	37	20	17581487	17581487	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56346986	56346987	+	Intron	DEL	CA	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95705561	95705561	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95705561	95705561	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80577335	80577335	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNLRB2	83657	broad.mit.edu	37	16	80577335	80577335	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71762136	71762136	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71838546	71838546	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71762136	71762136	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71838546	71838546	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA2R	60401	broad.mit.edu	37	X	65824429	65824429	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA2R	60401	broad.mit.edu	37	X	65824429	65824429	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA2R	60401	broad.mit.edu	37	X	65824429	65824429	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36324257	36324257	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36324257	36324257	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEPD1	80820	broad.mit.edu	37	7	36324257	36324257	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52329944	52329944	+	Intron	SNP	G	A	A	rs115160207	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52329944	52329944	+	Intron	SNP	G	A	A	rs115160207	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFHC1	114327	broad.mit.edu	37	6	52329944	52329944	+	Intron	SNP	G	A	A	rs115160207	by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36367458	36367458	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36367458	36367458	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C1	26523	broad.mit.edu	37	1	36367458	36367458	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A1	1973	broad.mit.edu	37	17	7480517	7480517	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A1	1973	broad.mit.edu	37	17	7480517	7480517	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4A1	1973	broad.mit.edu	37	17	7480517	7480517	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELL	8178	broad.mit.edu	37	19	18583425	18583425	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73462319	73462319	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL5	60481	broad.mit.edu	37	6	53156718	53156718	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL5	60481	broad.mit.edu	37	6	53156718	53156718	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL5	60481	broad.mit.edu	37	6	53156718	53156718	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46116895	46116895	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46116895	46116895	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML2	24139	broad.mit.edu	37	19	46116895	46116895	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14739404	14739405	+	Intron	INS	-	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAH	55740	broad.mit.edu	37	1	225699607	225699607	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	685777	685777	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	685777	685777	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132190304	132190304	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46587748	46587748	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46608818	46608818	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46587748	46587748	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46608818	46608818	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46587748	46587748	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPAS1	2034	broad.mit.edu	37	2	46608818	46608818	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34766489	34766489	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34766489	34766489	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144940551	144940551	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC1	2067	broad.mit.edu	37	19	45916956	45916956	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI3	79033	broad.mit.edu	37	1	44785335	44785335	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI3	79033	broad.mit.edu	37	1	44785335	44785335	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERI3	79033	broad.mit.edu	37	1	44785335	44785335	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22778145	22778145	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22778145	22778145	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5L	115704	broad.mit.edu	37	19	7918279	7918279	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93131467	93131467	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93159385	93159385	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93131467	93131467	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93159385	93159385	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93131467	93131467	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93159385	93159385	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56737273	56737273	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56768497	56768497	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56737273	56737273	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56768497	56768497	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56737273	56737273	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC1	55763	broad.mit.edu	37	4	56768497	56768497	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133682421	133682421	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133682421	133682421	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133682421	133682421	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38548401	38548401	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38548401	38548401	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOG	9941	broad.mit.edu	37	3	38548401	38548401	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25743889	25743889	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25743889	25743889	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123A	219287	broad.mit.edu	37	13	25743889	25743889	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114401679	114401679	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114401679	114401679	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114401679	114401679	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8376828	8376828	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM90A1	55138	broad.mit.edu	37	12	8376828	8376828	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13058114	13058114	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13058114	13058114	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM9C	171484	broad.mit.edu	37	X	13058114	13058114	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO41	150726	broad.mit.edu	37	2	73486384	73486384	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO41	150726	broad.mit.edu	37	2	73486384	73486384	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO43	286151	broad.mit.edu	37	8	101146616	101146616	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41927057	41927057	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO4	26272	broad.mit.edu	37	5	41927057	41927057	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3B	2215	broad.mit.edu	37	1	161595804	161595804	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR3B	2215	broad.mit.edu	37	1	161595804	161595804	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD2	9873	broad.mit.edu	37	11	72696067	72696067	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF6	2251	broad.mit.edu	37	12	4553270	4553270	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIZ1	84922	broad.mit.edu	37	19	56104103	56104103	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIZ1	84922	broad.mit.edu	37	19	56104103	56104103	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17122443	17122443	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17122443	17122443	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17122443	17122443	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128489738	128489738	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128489738	128489738	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497523	240497523	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497523	240497523	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240497523	240497523	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR3	2352	broad.mit.edu	37	11	71850176	71850176	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249102	52249102	+	3'UTR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249102	52249102	+	3'UTR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR1	2357	broad.mit.edu	37	19	52249102	52249102	+	3'UTR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65154527	65154527	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65154527	65154527	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD8	83786	broad.mit.edu	37	11	65154527	65154527	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108286768	108286768	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108287179	108287179	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108286768	108286768	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108287179	108287179	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108286768	108286768	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61899270	61899270	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61899270	61899270	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ3	117246	broad.mit.edu	37	17	61899270	61899270	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180671582	180671582	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180671582	180671582	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXR1	8087	broad.mit.edu	37	3	180671582	180671582	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB1	2553	broad.mit.edu	37	15	50593174	50593174	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB1	2553	broad.mit.edu	37	15	50593174	50593174	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151138777	151138777	+	Missense_Mutation	SNP	C	T	T	rs61730040	byFrequency;by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151138818	151138818	+	Missense_Mutation	SNP	T	C	C	rs61730039	byFrequency;by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30661020	30661020	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30661020	30661020	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30661020	30661020	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153782584	153782584	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153782584	153782584	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153782584	153782584	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38211697	38211697	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38211697	38211697	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72634141	72634141	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72634141	72634141	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72634141	72634141	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP2	54834	broad.mit.edu	37	1	118420645	118420645	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP2	54834	broad.mit.edu	37	1	118420645	118420645	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP2	54834	broad.mit.edu	37	1	118420645	118420645	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299374	154299374	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299691	154299691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299707	154299707	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299374	154299374	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299691	154299691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299707	154299707	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299691	154299691	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154299707	154299707	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1L1	256710	broad.mit.edu	37	12	75763966	75763966	+	3'UTR	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1L1	256710	broad.mit.edu	37	12	75763966	75763966	+	3'UTR	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLIPR1L1	256710	broad.mit.edu	37	12	75763966	75763966	+	3'UTR	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37396654	37396655	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37396654	37396655	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA4	2803	broad.mit.edu	37	3	37396654	37396655	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33581687	33581687	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33600726	33600726	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33581687	33581687	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33600726	33600726	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33581687	33581687	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH1	55094	broad.mit.edu	37	19	33600726	33600726	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120223	46120223	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120223	46120223	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1L1	60313	broad.mit.edu	37	1	46120223	46120223	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142623349	142623349	+	5'UTR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR126	57211	broad.mit.edu	37	6	142623349	142623349	+	5'UTR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR183	1880	broad.mit.edu	37	13	99947431	99947431	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR183	1880	broad.mit.edu	37	13	99947431	99947431	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR183	1880	broad.mit.edu	37	13	99947431	99947431	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR27	2850	broad.mit.edu	37	3	71804103	71804103	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR27	2850	broad.mit.edu	37	3	71804103	71804103	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR35	2859	broad.mit.edu	37	2	241570284	241570284	+	Silent	SNP	C	T	T	rs142918765	byFrequency;by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35502533	35502533	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35502533	35502533	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176859748	176859748	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176867754	176867754	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176859748	176859748	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176867754	176867754	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130789733	130789733	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130789733	130789733	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMD	79792	broad.mit.edu	37	8	144642079	144642079	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMD	79792	broad.mit.edu	37	8	144642079	144642079	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2I	2969	broad.mit.edu	37	7	74114631	74114631	+	Missense_Mutation	SNP	G	A	A	rs145729076		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2I	2969	broad.mit.edu	37	7	74114631	74114631	+	Missense_Mutation	SNP	G	A	A	rs145729076		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2I	2969	broad.mit.edu	37	7	74114631	74114631	+	Missense_Mutation	SNP	G	A	A	rs145729076		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810208	106810208	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810208	106810208	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106810208	106810208	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267266	45267266	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267266	45267266	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267266	45267266	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65476147	65476147	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65476147	65476147	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65476147	65476147	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28369410	28369410	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28369410	28369410	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DMA	3108	broad.mit.edu	37	6	32916705	32916705	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29896816	29896816	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46608134	46608134	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46608134	46608134	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH1	3269	broad.mit.edu	37	3	11302247	11302247	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH1	3269	broad.mit.edu	37	3	11302247	11302247	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43917151	43917151	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43917151	43917151	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYI	81888	broad.mit.edu	37	1	43917151	43917151	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6658507	6658507	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6658507	6658507	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFFO1	25900	broad.mit.edu	37	12	6658507	6658507	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL1	374918	broad.mit.edu	37	19	46733777	46733777	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL1	374918	broad.mit.edu	37	19	46733777	46733777	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFL1	374918	broad.mit.edu	37	19	46733777	46733777	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18735942	18735942	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18735942	18735942	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18735942	18735942	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15RA	3601	broad.mit.edu	37	10	5995219	5995219	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15RA	3601	broad.mit.edu	37	10	5995219	5995219	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15RA	3601	broad.mit.edu	37	10	5995219	5995219	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29972752	29972752	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29972752	29972752	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29972752	29972752	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPA2	3613	broad.mit.edu	37	18	12029064	12029064	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPA2	3613	broad.mit.edu	37	18	12029064	12029064	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949976	100949976	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949976	100949976	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100949976	100949976	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105242216	105242216	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105242216	105242216	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60005151	60005151	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60005151	60005151	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	60005151	60005151	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123143207	123143207	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123143207	123143207	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123143207	123143207	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISG20L2	81875	broad.mit.edu	37	1	156697208	156697208	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13217012	13217012	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13217012	13217012	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISM1	140862	broad.mit.edu	37	20	13217012	13217012	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374752	31374752	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374752	31374752	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31374752	31374752	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160922535	160922535	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160922535	160922535	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160922535	160922535	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128263325	128263325	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128263325	128263325	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IWS1	55677	broad.mit.edu	37	2	128263325	128263325	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6051524	6051524	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6051524	6051524	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6051524	6051524	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146997641	146997641	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146997641	146997641	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146997641	146997641	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124237114	124237114	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124237114	124237114	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124237114	124237114	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137713559	137713559	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137713559	137713559	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3B	51780	broad.mit.edu	37	5	137713559	137713559	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	416901	416901	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43893319	43893319	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43893319	43893319	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43893319	43893319	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128695987	128695987	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1257	57501	broad.mit.edu	37	3	128695987	128695987	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97279371	97279371	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97279371	97279371	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97279371	97279371	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43497628	43497628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43497628	43497628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43497628	43497628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1920442	1920442	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1920442	1920442	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1804	84451	broad.mit.edu	37	1	233489706	233489707	+	Intron	DEL	TG	-	-	rs7551511	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44893620	44893620	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44894219	44894219	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44893620	44893620	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44894219	44894219	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137518700	137518700	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137518700	137518700	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137518700	137518700	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91514509	91514509	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91514509	91514509	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20B	9585	broad.mit.edu	37	10	91514509	91514509	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245530604	245530604	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245530604	245530604	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245530604	245530604	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC2	90990	broad.mit.edu	37	8	145697661	145697661	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFC2	90990	broad.mit.edu	37	8	145697661	145697661	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7820880	7820880	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7820880	7820880	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7820880	7820880	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL15	80311	broad.mit.edu	37	X	24006555	24006555	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL15	80311	broad.mit.edu	37	X	24006555	24006555	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL15	80311	broad.mit.edu	37	X	24006555	24006555	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136963999	136963999	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136963999	136963999	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL3	26249	broad.mit.edu	37	5	136963999	136963999	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187149394	187149394	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187149394	187149394	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLKB1	3818	broad.mit.edu	37	4	187149394	187149394	+	Silent	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135032354	135032354	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135032354	135032354	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135032354	135032354	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT12	3859	broad.mit.edu	37	17	39022848	39022848	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT12	3859	broad.mit.edu	37	17	39022848	39022848	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT12	3859	broad.mit.edu	37	17	39022848	39022848	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39634123	39634123	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP23-1	337963	broad.mit.edu	37	21	31720897	31720897	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP23-1	337963	broad.mit.edu	37	21	31720897	31720897	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP23-1	337963	broad.mit.edu	37	21	31720897	31720897	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112437028	112437028	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112437028	112437028	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112437028	112437028	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183192588	183192588	+	Intron	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC2	3918	broad.mit.edu	37	1	183192588	183192588	+	Intron	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225592095	225592095	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225592095	225592095	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBR	3930	broad.mit.edu	37	1	225592095	225592095	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCAT	3931	broad.mit.edu	37	16	67976321	67976321	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCAT	3931	broad.mit.edu	37	16	67976321	67976321	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCAT	3931	broad.mit.edu	37	16	67976321	67976321	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17963471	17963471	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17963471	17963471	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCORL	254251	broad.mit.edu	37	4	17963471	17963471	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967714	25967714	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967714	25967714	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967714	25967714	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27389919	27389919	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27389919	27389919	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27389919	27389919	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75602968	75602968	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75602968	75602968	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105406166	105406166	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105406166	105406166	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105406166	105406166	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73559280	73559280	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLGL2	3993	broad.mit.edu	37	17	73559280	73559280	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96350700	96350700	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96350700	96350700	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96350700	96350700	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284100	284100	broad.mit.edu	37	17	36213905	36213905	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284100	284100	broad.mit.edu	37	17	36213905	36213905	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284100	284100	broad.mit.edu	37	17	36213905	36213905	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400696	400696	broad.mit.edu	37	19	40172135	40172135	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC493754	493754	broad.mit.edu	37	7	66038549	66038549	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC493754	493754	broad.mit.edu	37	7	66038549	66038549	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8388289	8388289	+	RNA	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8388289	8388289	+	RNA	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727896	727896	broad.mit.edu	37	18	2946479	2946479	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56344683	56344683	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56344683	56344683	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRDD	55367	broad.mit.edu	37	11	800571	800571	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRDD	55367	broad.mit.edu	37	11	800571	800571	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57567684	57567684	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57567684	57567684	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57567684	57567684	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137225	40137225	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137225	40137225	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137225	40137225	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86039160	86039160	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86039160	86039160	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105459	41105459	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105476	41105476	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105498	41105498	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105459	41105459	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105476	41105476	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105498	41105498	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105459	41105459	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP4	8425	broad.mit.edu	37	19	41105476	41105476	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56866476	56866476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56866476	56866476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYN	4067	broad.mit.edu	37	8	56866476	56866476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39751103	39751103	+	Intron	DEL	T	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797800	39797800	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39751103	39751103	+	Intron	DEL	T	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797800	39797800	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39751103	39751103	+	Intron	DEL	T	-	-			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39797800	39797800	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139996739	139996740	+	Intron	INS	-	CG	CG	rs148862659	by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139996768	139996769	+	Intron	INS	-	AC	AC	rs67165319		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12773980	12773980	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B1	4125	broad.mit.edu	37	19	12773980	12773980	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBA	4126	broad.mit.edu	37	4	103590175	103590175	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210569127	210569127	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210569127	210569127	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210569127	210569127	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185169074	185169074	+	Splice_Site	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185169074	185169074	+	Splice_Site	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185169074	185169074	+	Splice_Site	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56183268	56183268	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56183268	56183268	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K1	4214	broad.mit.edu	37	5	56183268	56183268	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255868	18255868	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST3	23031	broad.mit.edu	37	19	18255868	18255868	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94248517	94248517	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94248517	94248517	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94248517	94248517	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70351937	70351937	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70352266	70352266	+	Silent	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70351937	70351937	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70352266	70352266	+	Silent	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70351937	70351937	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70352266	70352266	+	Silent	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128842758	128842758	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128842758	128842758	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD9	84804	broad.mit.edu	37	2	103334977	103334978	+	Frame_Shift_Ins	INS	-	G	G	rs145424077		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT3	4248	broad.mit.edu	37	22	39883979	39883979	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT3	4248	broad.mit.edu	37	22	39883979	39883979	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222832865	222832865	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222832865	222832865	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIA3	375056	broad.mit.edu	37	1	222832865	222832865	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37059088	37059088	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37059088	37059088	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37059088	37059088	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152064995	152064995	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152064995	152064995	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	152064995	152064995	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154836503	154836503	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154836503	154836503	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857737	90857737	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857737	90857737	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90857737	90857737	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575979	49575979	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575979	49575979	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCS3	27304	broad.mit.edu	37	20	49575979	49575979	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108754118	108754118	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108754118	108754118	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108754118	108754118	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPND	84954	broad.mit.edu	37	19	4348887	4348887	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPND	84954	broad.mit.edu	37	19	4348887	4348887	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1	4485	broad.mit.edu	37	3	49723444	49723444	+	Intron	SNP	C	G	G	rs4052585		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121463465	121463465	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121463465	121463465	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTBP	27085	broad.mit.edu	37	8	121463465	121463465	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55489449	55489449	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55489449	55489449	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55489449	55489449	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9068944	9068944	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9068944	9068944	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9068944	9068944	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49425625	49425625	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49425625	49425625	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49425625	49425625	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70165187	70165187	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70165187	70165187	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXD1	4084	broad.mit.edu	37	2	70165187	70165187	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77759506	77759506	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77760049	77760049	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77759506	77759506	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77760049	77760049	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77759506	77759506	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77760049	77760049	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBPAP	84073	broad.mit.edu	37	17	48602072	48602073	+	Intron	INS	-	GT	GT			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30418929	30418929	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30418929	30418929	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30418929	30418929	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYNN	55892	broad.mit.edu	37	3	169498415	169498415	+	Silent	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2071593	2071593	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48594762	48594762	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48594762	48594762	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP1	9683	broad.mit.edu	37	16	48594762	48594762	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA35	60560	broad.mit.edu	37	9	88635799	88635799	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78583831	78583831	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78583831	78583831	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78583831	78583831	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16921339	16921339	+	Intron	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144619308	144619308	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144619308	144619308	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144619308	144619308	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54914904	54914904	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54914904	54914904	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54914904	54914904	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFC2	4718	broad.mit.edu	37	11	77790745	77790745	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK7	140609	broad.mit.edu	37	1	198248314	198248314	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34284400	34284400	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34284400	34284400	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFS1	9054	broad.mit.edu	37	20	34284400	34284400	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156899773	156899773	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156899773	156899773	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL4	348938	broad.mit.edu	37	5	156899773	156899773	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLK	51701	broad.mit.edu	37	17	26449576	26449576	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLK	51701	broad.mit.edu	37	17	26449576	26449576	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLK	51701	broad.mit.edu	37	17	26449576	26449576	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56423835	56423835	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56423835	56423835	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56423835	56423835	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175812222	175812222	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175812222	175812222	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOP16	51491	broad.mit.edu	37	5	175812222	175812222	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26086939	26086939	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26110161	26110161	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26086939	26086939	+	Intron	DEL	C	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26110161	26110161	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26110161	26110161	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120467956	120467957	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120467956	120467957	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH2	4853	broad.mit.edu	37	1	120467956	120467957	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPPA	4878	broad.mit.edu	37	1	11907671	11907671	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPPA	4878	broad.mit.edu	37	1	11907671	11907671	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPPA	4878	broad.mit.edu	37	1	11907671	11907671	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR0B1	190	broad.mit.edu	37	X	30326416	30326416	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83635863	83635863	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	83635863	83635863	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDC	10726	broad.mit.edu	37	1	27250703	27250703	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDC	10726	broad.mit.edu	37	1	27250703	27250703	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73749182	73749182	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73749182	73749182	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUMB	8650	broad.mit.edu	37	14	73749182	73749182	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131719195	131719195	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131719195	131719195	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131719195	131719195	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH4	11247	broad.mit.edu	37	12	57618593	57618593	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH4	11247	broad.mit.edu	37	12	57618593	57618593	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBP2A	29991	broad.mit.edu	37	9	138438913	138438913	+	Intron	DEL	G	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220432056	220432056	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220432056	220432056	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870875	123870875	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870875	123870875	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870875	123870875	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78383451	78383451	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78383451	78383451	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78383451	78383451	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624648	53624648	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624648	53624648	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624648	53624648	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPHN1	4983	broad.mit.edu	37	X	67331931	67331932	+	Intron	DEL	AG	-	-	rs59924749		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145106271	145106271	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145106271	145106271	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549566	158549566	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549566	158549566	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549566	158549566	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920842	247920842	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920842	247920842	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920842	247920842	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167015	248167015	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167015	248167015	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248167015	248167015	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112672	248112672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112672	248112672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112672	248112672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248403046	248403046	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248403046	248403046	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M4	26245	broad.mit.edu	37	1	248403046	248403046	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655162	247655162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655162	247655162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655162	247655162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59131926	59131926	+	5'Flank	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6T1	219874	broad.mit.edu	37	11	123814524	123814524	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938176	14938176	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938176	14938176	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938176	14938176	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555010	17555010	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555010	17555010	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17555010	17555010	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169630396	169630396	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169630396	169630396	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169630396	169630396	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPSS1	9061	broad.mit.edu	37	4	108552995	108552995	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25064710	25064710	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25064710	25064710	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25064710	25064710	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50074342	50074342	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50074342	50074342	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP8	79668	broad.mit.edu	37	5	50074342	50074342	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47337485	47337486	+	Intron	DEL	TC	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222842	140222842	+	Missense_Mutation	SNP	C	T	T	rs146582216		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222842	140222842	+	Missense_Mutation	SNP	C	T	T	rs146582216		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA8	56140	broad.mit.edu	37	5	140222842	140222842	+	Missense_Mutation	SNP	C	T	T	rs146582216		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82763878	82763878	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82763878	82763878	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82763878	82763878	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62896764	62896764	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62896764	62896764	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62896764	62896764	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3A	5139	broad.mit.edu	37	12	20602576	20602576	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149514487	149514487	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149514487	149514487	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149514487	149514487	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70190452	70190452	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70190452	70190452	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70190452	70190452	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098196	15098196	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098227	15098227	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098196	15098196	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098227	15098227	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098196	15098196	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC1	23042	broad.mit.edu	37	16	15098227	15098227	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX14	5195	broad.mit.edu	37	1	10555367	10555367	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX14	5195	broad.mit.edu	37	1	10555367	10555367	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX14	5195	broad.mit.edu	37	1	10555367	10555367	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47723058	47723058	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47723058	47723058	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47723058	47723058	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196460684	196460684	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196460684	196460684	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGX	54965	broad.mit.edu	37	3	196460684	196460684	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204435749	204435749	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204435749	204435749	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476724	110476724	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476724	110476724	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110476724	110476724	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51889442	51889442	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51929718	51929718	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51889442	51889442	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51929718	51929718	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51889442	51889442	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51929718	51929718	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64029861	64029861	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64029861	64029861	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64029861	64029861	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949863	198949863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949863	198949863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949863	198949863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242271010	242271010	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242271010	242271010	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242271010	242271010	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151151947	151151951	+	Frame_Shift_Del	DEL	CCTCC	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151151947	151151951	+	Frame_Shift_Del	DEL	CCTCC	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG1	57480	broad.mit.edu	37	6	151151947	151151951	+	Frame_Shift_Del	DEL	CCTCC	-	-			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH3	79990	broad.mit.edu	37	17	40821518	40821518	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100853759	100853759	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100853759	100853759	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100853759	100853759	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103044264	103044264	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103044264	103044264	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLP1	5354	broad.mit.edu	37	X	103044264	103044264	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126751201	126751201	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126751201	126751201	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131866497	131866497	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131866497	131866497	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190738169	190738169	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190738169	190738169	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76631552	76631552	+	RNA	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76631552	76631552	+	RNA	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140441330	140441330	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140441330	140441330	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLK	51426	broad.mit.edu	37	5	74880722	74880722	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLK	51426	broad.mit.edu	37	5	74880722	74880722	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLK	51426	broad.mit.edu	37	5	74880722	74880722	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124503575	124503575	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124503575	124503575	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POT1	25913	broad.mit.edu	37	7	124503575	124503575	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	26223870	26223870	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	26223870	26223870	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2A	5520	broad.mit.edu	37	8	26223870	26223870	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12887798	12887798	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12887798	12887798	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF11	440560	broad.mit.edu	37	1	12887798	12887798	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF20	645425	broad.mit.edu	37	1	13743178	13743178	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF20	645425	broad.mit.edu	37	1	13743178	13743178	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM7	11105	broad.mit.edu	37	16	90124212	90124212	+	3'UTR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44569580	44569580	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44569580	44569580	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREPL	9581	broad.mit.edu	37	2	44569580	44569580	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACA	5566	broad.mit.edu	37	19	14218166	14218166	+	Silent	SNP	G	A	A	rs56105247	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062972	76062972	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062972	76062972	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062972	76062972	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18430067	18430067	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18430067	18430067	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD3	23362	broad.mit.edu	37	8	18430067	18430067	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSEN2	5664	broad.mit.edu	37	1	227083040	227083040	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN1	5770	broad.mit.edu	37	20	49196208	49196208	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN1	5770	broad.mit.edu	37	20	49196208	49196208	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN1	5770	broad.mit.edu	37	20	49196208	49196208	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721687	198721687	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721687	198721687	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198721687	198721687	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55703100	55703100	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128321381	128321381	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128321381	128321381	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121680889	121680889	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121680889	121680889	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121680889	121680889	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURB	5814	broad.mit.edu	37	7	44924761	44924761	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURB	5814	broad.mit.edu	37	7	44924761	44924761	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163836962	163836962	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM2	22864	broad.mit.edu	37	12	57674056	57674057	+	Intron	INS	-	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
R3HDM2	22864	broad.mit.edu	37	12	57674056	57674057	+	Intron	INS	-	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70133583	70133583	+	5'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70133583	70133583	+	5'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3IP	117177	broad.mit.edu	37	12	70133583	70133583	+	5'UTR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40C	57799	broad.mit.edu	37	16	677517	677522	+	In_Frame_Del	DEL	CGGGGG	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40C	57799	broad.mit.edu	37	16	677517	677522	+	In_Frame_Del	DEL	CGGGGG	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB40C	57799	broad.mit.edu	37	16	677517	677522	+	In_Frame_Del	DEL	CGGGGG	-	-			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51667888	51667888	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51667888	51667888	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L2	23132	broad.mit.edu	37	3	51667888	51667888	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20475971	20475971	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20475971	20475971	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20475971	20475971	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGPS2	55103	broad.mit.edu	37	1	178802459	178802459	+	Intron	SNP	A	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25542961	25542961	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25542961	25542961	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127961293	127961293	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127961293	127961293	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127961293	127961293	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36122006	36122006	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36122006	36122006	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM42	79171	broad.mit.edu	37	19	36122006	36122006	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55560138	55560138	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55560138	55560138	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55560242	55560242	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH13	112724	broad.mit.edu	37	19	55560138	55560138	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD5	84220	broad.mit.edu	37	2	113190977	113190977	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152273026	152273026	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152295239	152295239	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152273026	152273026	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152295239	152295239	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152273026	152273026	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152295239	152295239	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF207	388591	broad.mit.edu	37	1	6269944	6269944	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78988150	78988150	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78988150	78988150	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78988150	78988150	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROD1	9991	broad.mit.edu	37	9	115024748	115024748	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROD1	9991	broad.mit.edu	37	9	115024748	115024748	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROD1	9991	broad.mit.edu	37	9	115024748	115024748	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68897294	68897294	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68897294	68897294	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68897294	68897294	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL11	6135	broad.mit.edu	37	1	24021184	24021184	+	Missense_Mutation	SNP	C	T	T	rs11556036		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL11	6135	broad.mit.edu	37	1	24021184	24021184	+	Missense_Mutation	SNP	C	T	T	rs11556036		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL11	6135	broad.mit.edu	37	1	24021184	24021184	+	Missense_Mutation	SNP	C	T	T	rs11556036		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL22	6146	broad.mit.edu	37	1	6253091	6253091	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL22	6146	broad.mit.edu	37	1	6253091	6253091	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL22	6146	broad.mit.edu	37	1	6253091	6253091	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAD	6236	broad.mit.edu	37	16	66958740	66958740	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRAD	6236	broad.mit.edu	37	16	66958740	66958740	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7240517	7240518	+	Intron	INS	-	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123003363	123003363	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123003363	123003363	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC2	65117	broad.mit.edu	37	12	123003363	123003363	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTEL1	51750	broad.mit.edu	37	20	62321110	62321110	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTEL1	51750	broad.mit.edu	37	20	62321110	62321110	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107069280	107069280	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107069280	107069280	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4IP1	84816	broad.mit.edu	37	6	107069280	107069280	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178996340	178996340	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178996340	178996340	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178996340	178996340	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	37077123	37077123	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	37077123	37077123	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39025783	39025783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39025783	39025783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39025783	39025783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550554	237550554	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237806522	237806522	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550554	237550554	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237806522	237806522	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237550554	237550554	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34145245	34145245	+	Splice_Site	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34040856	34040856	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34145245	34145245	+	Splice_Site	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34145245	34145245	+	Splice_Site	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68377414	68377414	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68377414	68377414	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS3	55291	broad.mit.edu	37	11	68377414	68377414	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36017721	36017721	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36017721	36017721	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36017721	36017721	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75305187	75305187	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75305187	75305187	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP5	192683	broad.mit.edu	37	15	75305187	75305187	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144874324	144874324	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144874324	144874324	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCTR	6344	broad.mit.edu	37	2	120221964	120221964	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCTR	6344	broad.mit.edu	37	2	120221964	120221964	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24D	9871	broad.mit.edu	37	4	119745872	119745873	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169562793	169562793	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169562793	169562793	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169562793	169562793	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48479042	48479042	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48479042	48479042	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP1	29843	broad.mit.edu	37	12	48479042	48479042	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37422508	37422508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37422508	37422508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETD4	54093	broad.mit.edu	37	21	37422508	37422508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29883923	29883923	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L2	26470	broad.mit.edu	37	16	29883923	29883923	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26771546	26771546	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26771546	26771546	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26771546	26771546	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145379542	145379542	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145379542	145379542	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3RF2	153769	broad.mit.edu	37	5	145379542	145379542	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGIRR	59307	broad.mit.edu	37	11	407754	407754	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGIRR	59307	broad.mit.edu	37	11	407754	407754	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF1	6504	broad.mit.edu	37	1	160582213	160582213	+	Intron	DEL	C	-	-	rs2025515	by1000genomes	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A2	6558	broad.mit.edu	37	5	127420138	127420138	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1074629	1074629	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1089245	1089245	+	Splice_Site	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1074629	1074629	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1089245	1089245	+	Splice_Site	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121634004	121634004	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121634004	121634004	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A2	6565	broad.mit.edu	37	3	121634004	121634004	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25850952	25850952	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A2	6506	broad.mit.edu	37	11	35302424	35302424	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62761244	62761244	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62761244	62761244	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62761244	62761244	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A19	60386	broad.mit.edu	37	17	73274132	73274132	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A19	60386	broad.mit.edu	37	17	73274132	73274132	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A32	81034	broad.mit.edu	37	8	104426906	104426907	+	Intron	DEL	AC	-	-	rs59125759		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107416977	107416977	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A3	1811	broad.mit.edu	37	7	107416977	107416977	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32428079	32428079	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32428079	32428079	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A6	55676	broad.mit.edu	37	2	32428079	32428079	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222317	44222317	+	3'UTR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222521	44222521	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222317	44222317	+	3'UTR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222521	44222521	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B2	347734	broad.mit.edu	37	6	44222521	44222521	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D1	23169	broad.mit.edu	37	1	67486180	67486180	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D1	23169	broad.mit.edu	37	1	67486258	67486258	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D1	23169	broad.mit.edu	37	1	67486180	67486180	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35D1	23169	broad.mit.edu	37	1	67486258	67486258	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165755217	165755217	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165755217	165755217	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165755217	165755217	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18292133	18292133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18292133	18292133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18292133	18292133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55725967	55725967	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55725967	55725967	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55725967	55725967	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33351508	33351508	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33351508	33351508	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33351508	33351508	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617351	70617351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617351	70617351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70617351	70617351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48573361	48573361	+	5'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48575671	48575671	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48573361	48573361	+	5'UTR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48575671	48575671	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48575671	48575671	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC4	10051	broad.mit.edu	37	3	160141144	160141147	+	Intron	DEL	TTTG	-	-	rs4679884		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244470	156244470	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244470	156244470	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG5	23381	broad.mit.edu	37	1	156244470	156244470	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127569508	127569508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127569508	127569508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127569508	127569508	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG2	54221	broad.mit.edu	37	2	1133330	1133330	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109628	231109628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109762	231109762	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109628	231109628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109762	231109762	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109628	231109628	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109762	231109762	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24825710	24825710	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24825710	24825710	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA13	221178	broad.mit.edu	37	13	24825710	24825710	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2807567	2807567	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRT	51593	broad.mit.edu	37	7	100482702	100482702	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182760647	182760647	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182760647	182760647	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094490	77094490	+	Nonstop_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094490	77094490	+	Nonstop_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77094490	77094490	+	Nonstop_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99786150	99786150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99786150	99786150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99786150	99786150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD7	56910	broad.mit.edu	37	2	96858055	96858055	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD7	56910	broad.mit.edu	37	2	96858055	96858055	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56744927	56744927	+	Missense_Mutation	SNP	C	T	T	rs149666262		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56744927	56744927	+	Missense_Mutation	SNP	C	T	T	rs149666262		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56744927	56744927	+	Missense_Mutation	SNP	C	T	T	rs149666262		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4473515	4473515	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4473515	4473515	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4473515	4473515	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73115039	73115039	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73115039	73115039	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1A	6804	broad.mit.edu	37	7	73115039	73115039	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP1	6812	broad.mit.edu	37	9	130444613	130444613	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP1	6812	broad.mit.edu	37	9	130444613	130444613	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP3	6814	broad.mit.edu	37	1	109319079	109319080	+	Intron	DEL	AA	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP3	6814	broad.mit.edu	37	1	109319079	109319080	+	Intron	DEL	AA	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596267	70596267	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596267	70596267	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70596267	70596267	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158489689	158489689	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR9	134860	broad.mit.edu	37	6	132859813	132859813	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR9	134860	broad.mit.edu	37	6	132859813	132859813	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR9	134860	broad.mit.edu	37	6	132859813	132859813	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970013	123970013	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123973013	123973013	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970013	123970013	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123973013	123973013	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123970013	123970013	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123973013	123973013	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120843827	120843827	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120843827	120843827	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120843827	120843827	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK1	57551	broad.mit.edu	37	17	27825560	27825560	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK1	57551	broad.mit.edu	37	17	27825560	27825560	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK1	57551	broad.mit.edu	37	17	27825560	27825560	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837286	114837286	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837286	114837286	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114837286	114837286	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115981282	115981282	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115981282	115981282	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115981282	115981282	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56650712	56650712	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56650712	56650712	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56650712	56650712	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX264	51368	broad.mit.edu	37	3	51718530	51718530	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX264	51368	broad.mit.edu	37	3	51718530	51718530	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX264	51368	broad.mit.edu	37	3	51718530	51718530	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51504577	51504577	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51504577	51504577	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51504577	51504577	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIA1	7072	broad.mit.edu	37	2	70443902	70443902	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIA1	7072	broad.mit.edu	37	2	70443902	70443902	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TICAM1	148022	broad.mit.edu	37	19	4817852	4817852	+	Missense_Mutation	SNP	G	A	A	rs141394423	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27052158	27052158	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60613585	60613585	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60613585	60613585	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLK2	11011	broad.mit.edu	37	17	60613585	60613585	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133099400	133099400	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133099400	133099400	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM108	66000	broad.mit.edu	37	3	133099400	133099400	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9332797	9332797	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM41B	440026	broad.mit.edu	37	11	9332797	9332797	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136380685	136380685	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136380685	136380685	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8C	389827	broad.mit.edu	37	9	136380685	136380685	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37469468	37469468	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37469468	37469468	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM40	10452	broad.mit.edu	37	19	45406211	45406211	+	Intron	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	G	G	rs121912660		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	G	G	rs121912660		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	G	G	rs121912660		TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPPP2	122664	broad.mit.edu	37	14	21498871	21498871	+	Missense_Mutation	SNP	C	G	G	rs137962022	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2A	29896	broad.mit.edu	37	7	23571409	23571409	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2A	29896	broad.mit.edu	37	7	23571409	23571409	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2A	29896	broad.mit.edu	37	7	23571409	23571409	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45483287	45483287	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45483287	45483287	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC10	7109	broad.mit.edu	37	21	45483287	45483287	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6A	79090	broad.mit.edu	37	19	45668079	45668079	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6A	79090	broad.mit.edu	37	19	45668079	45668079	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6A	79090	broad.mit.edu	37	19	45668079	45668079	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72893294	72893294	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72893294	72893294	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72893294	72893294	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM7	81786	broad.mit.edu	37	5	180622504	180622504	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM7	81786	broad.mit.edu	37	5	180622504	180622504	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM7	81786	broad.mit.edu	37	5	180622504	180622504	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50891429	50891429	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50891429	50891429	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM7	54822	broad.mit.edu	37	15	50891429	50891429	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98478962	98478962	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98478962	98478962	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98497313	98497313	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98497313	98497313	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D2	9819	broad.mit.edu	37	3	150128747	150128747	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D2	9819	broad.mit.edu	37	3	150128747	150128747	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC22D2	9819	broad.mit.edu	37	3	150128747	150128747	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768409	31768409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768409	31768409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768409	31768409	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67854848	67854848	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSNAXIP1	55815	broad.mit.edu	37	16	67854848	67854848	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC19	54902	broad.mit.edu	37	17	15903643	15903643	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC19	54902	broad.mit.edu	37	17	15903643	15903643	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99696503	99696503	+	Splice_Site	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99696503	99696503	+	Splice_Site	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC23	64927	broad.mit.edu	37	15	99696503	99696503	+	Splice_Site	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338775	89338775	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338841	89338841	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338775	89338775	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338841	89338841	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338775	89338775	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338841	89338841	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179605502	179605502	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179605502	179605502	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179476039	179476039	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179605502	179605502	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYMP	1890	broad.mit.edu	37	22	50967929	50967929	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYMP	1890	broad.mit.edu	37	22	50967929	50967929	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41865997	41865997	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41865997	41865997	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41865997	41865997	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2	55833	broad.mit.edu	37	9	33963754	33963754	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2	55833	broad.mit.edu	37	9	33963754	33963754	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2	55833	broad.mit.edu	37	9	33963754	33963754	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156981717	156981717	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156981717	156981717	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	156981717	156981717	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFSP2	55325	broad.mit.edu	37	4	186343595	186343595	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UFSP2	55325	broad.mit.edu	37	4	186343595	186343595	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150385794	150385794	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150385794	150385794	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULBP3	79465	broad.mit.edu	37	6	150385794	150385794	+	Silent	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33491319	33491319	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33491319	33491319	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73053578	73053578	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5B	219699	broad.mit.edu	37	10	73053578	73053578	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35425504	35425504	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35425504	35425504	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991236	158991236	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991236	158991236	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991236	158991236	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRQ	27089	broad.mit.edu	37	5	132203218	132203218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRQ	27089	broad.mit.edu	37	5	132203218	132203218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRQ	27089	broad.mit.edu	37	5	132203218	132203218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61538783	61538783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61538783	61538783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61538783	61538783	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144875739	144875739	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145103245	145103245	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144875739	144875739	+	Intron	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145103245	145103245	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145103245	145103245	+	Silent	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75852254	75852254	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75852254	75852254	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UVRAG	7405	broad.mit.edu	37	11	75852254	75852254	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38979235	38979235	+	IGR	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383712	42383713	+	IGR	INS	-	A	A	rs68020006		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42384772	42384773	+	IGR	INS	-	CAA	CAA	rs61847692		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385417	42385421	+	IGR	DEL	GAGTG	-	-	rs4337616		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42393635	42393635	+	IGR	DEL	G	-	-	rs75146682		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101080015	101080015	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124135212	124135212	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57344348	57344348	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698793	79698793	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177634	88177634	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20611005	20611005	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30762269	30762269	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29305076	29305076	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	236275238	236275246	+	IGR	DEL	AACATTGAA	-	-	rs56332841		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248570553	248570554	+	IGR	INS	-	GTTAT	GTTAT	rs146850247	by1000genomes	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6194810	6194810	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195571324	195571324	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384264	125384264	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13649747	13649747	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	1420530	1420530	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49099749	49099753	+	IGR	DEL	TCCGG	-	-	rs60947727		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9696712	9696712	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882601	29882601	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41318630	41318630	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5973689	5973689	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99228296	99228296	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7118642	7118642	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90733776	90733776	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742872	136742872	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743314	136743314	+	IGR	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37403108	37403108	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13453354	13453354	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38979235	38979235	+	IGR	SNP	T	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383712	42383713	+	IGR	INS	-	A	A	rs68020006		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42384772	42384773	+	IGR	INS	-	CAA	CAA	rs61847692		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42390479	42390479	+	IGR	DEL	G	-	-	rs72505278		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	101080015	101080015	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124135212	124135212	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57344348	57344348	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698793	79698793	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177634	88177634	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20611005	20611005	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30762269	30762269	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29305076	29305076	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6194810	6194810	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124519873	124519873	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195571324	195571324	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384264	125384264	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13649747	13649747	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	1420530	1420530	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9696712	9696712	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882601	29882601	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41318630	41318630	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5973689	5973689	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99228296	99228296	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693593	62693593	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7118642	7118642	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90733776	90733776	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742872	136742872	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743314	136743314	+	IGR	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37403108	37403108	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13453354	13453354	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13483364	13483364	+	IGR	DEL	T	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38930121	38930121	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124135212	124135212	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227295	50227295	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51426433	51426433	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57344348	57344348	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79698793	79698793	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75993947	75993947	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	85191958	85191958	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88177634	88177634	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114539	19114539	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140791	21140791	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76114393	76114393	+	IGR	SNP	A	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20611005	20611005	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20650836	20650836	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30762269	30762269	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52032535	52032535	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115688	191115688	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	6194810	6194810	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14861367	14861367	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16635695	16635695	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	124519873	124519873	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128961030	128961030	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	176881647	176881647	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195347075	195347075	+	IGR	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195571324	195571324	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88368125	88368125	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125384264	125384264	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13649747	13649747	+	IGR	SNP	T	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70115728	70115728	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9696712	9696712	+	IGR	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882601	29882601	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597747	62597747	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	41318630	41318630	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	5973689	5973689	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	99228296	99228296	+	IGR	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152142896	152142896	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693593	62693593	+	IGR	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7118642	7118642	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106208958	106208958	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136742872	136742872	+	IGR	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37403108	37403108	+	IGR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62304383	62304383	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62304383	62304383	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62304383	62304383	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS25	84313	broad.mit.edu	37	17	40926569	40926569	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS25	84313	broad.mit.edu	37	17	40926569	40926569	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR26	80232	broad.mit.edu	37	1	224619513	224619513	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR26	80232	broad.mit.edu	37	1	224619513	224619513	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117566949	117566949	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117566949	117566949	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167293690	167293690	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167293690	167293690	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167293690	167293690	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124146378	124146378	+	Missense_Mutation	SNP	G	A	A	rs144947635	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124146378	124146378	+	Missense_Mutation	SNP	G	A	A	rs144947635	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124146378	124146378	+	Missense_Mutation	SNP	G	A	A	rs144947635	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37443278	37443278	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37443278	37443278	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	709170	709170	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR90	197335	broad.mit.edu	37	16	709170	709170	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR9	389668	broad.mit.edu	37	8	71593291	71593291	+	5'UTR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR9	389668	broad.mit.edu	37	8	71593291	71593291	+	5'UTR	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183515958	183515958	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345114	100345114	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345114	100345114	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100345114	100345114	+	Intron	SNP	T	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	166958699	166958699	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	166958699	166958699	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBBX	79740	broad.mit.edu	37	3	166958699	166958699	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11857553	11857553	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11857553	11857553	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H7A	29066	broad.mit.edu	37	16	11857553	11857553	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72821294	72821294	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72821294	72821294	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617486	77617486	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617486	77617486	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77617486	77617486	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP41	286128	broad.mit.edu	37	8	144332687	144332687	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP41	286128	broad.mit.edu	37	8	144332687	144332687	+	3'UTR	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813279	106813279	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813279	106813279	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106813279	106813279	+	Silent	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222054	68222054	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222054	68222054	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222054	68222054	+	Intron	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF224	7767	broad.mit.edu	37	19	44604934	44604934	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF224	7767	broad.mit.edu	37	19	44604934	44604934	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF224	7767	broad.mit.edu	37	19	44604934	44604934	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32844370	32844370	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32844370	32844370	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF507	22847	broad.mit.edu	37	19	32844370	32844370	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF546	339327	broad.mit.edu	37	19	40519640	40519640	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF546	339327	broad.mit.edu	37	19	40519640	40519640	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF546	339327	broad.mit.edu	37	19	40519640	40519640	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3490921	3490921	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3490921	3490921	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF597	146434	broad.mit.edu	37	16	3490921	3490921	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF616	90317	broad.mit.edu	37	19	52619760	52619760	+	Silent	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31073109	31073109	+	Silent	SNP	C	T	T	rs144972780	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31073109	31073109	+	Silent	SNP	C	T	T	rs144972780	byFrequency	TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF668	79759	broad.mit.edu	37	16	31073109	31073109	+	Silent	SNP	C	T	T	rs144972780	byFrequency	TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134424857	134424857	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134424857	134424857	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134424857	134424857	+	Intron	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF821	55565	broad.mit.edu	37	16	71913922	71913922	+	5'UTR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF821	55565	broad.mit.edu	37	16	71913922	71913922	+	5'UTR	SNP	C	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF821	55565	broad.mit.edu	37	16	71913922	71913922	+	5'UTR	SNP	C	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115090800	115090800	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115090800	115090800	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF828	283489	broad.mit.edu	37	13	115090800	115090800	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF2	223082	broad.mit.edu	37	7	30329309	30329309	+	Intron	SNP	A	G	G	rs13307957		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF2	223082	broad.mit.edu	37	7	30329309	30329309	+	Intron	SNP	A	G	G	rs13307957		TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45504493	45504493	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45504493	45504493	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25420074	25420074	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186670938	186670938	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78639975	78639975	+	RNA	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606332	100606332	+	Intron	SNP	A	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	130561643	130561643	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498653	142498654	+	Intron	DEL	AT	-	-			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498916	142498916	+	RNA	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65219681	65219681	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25420074	25420074	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186670938	186670938	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78639975	78639975	+	RNA	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	130561643	130561643	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498916	142498916	+	RNA	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65219681	65219681	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	65262003	65262003	+	Intron	SNP	A	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25420074	25420074	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	32686956	32686956	+	5'Flank	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14179411	14179411	+	Silent	SNP	C	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186670938	186670938	+	Intron	SNP	G	C	C			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78639975	78639975	+	RNA	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	130561643	130561643	+	Intron	SNP	C	G	G			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142498916	142498916	+	RNA	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65219681	65219681	+	Intron	SNP	G	A	A			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178538	17178538	+	RNA	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178538	17178538	+	RNA	SNP	G	T	T			TCGA-44-2662-01A-01D-0969-08	TCGA-44-2662-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17178538	17178538	+	RNA	SNP	G	T	T			TCGA-44-2662-01A-01W-0928-08	TCGA-44-2662-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
