FFPE Cases
2014_09_02 Data Snapshot
FFPE description from TCGA Tissue Sample Requirements (2013)

FFPE (formalin fixed paraffin embedded) samples are not suitable for molecular analysis because the RNA and DNA are trapped in the nucleic acid-protein cross linking from the fixation process.

Table 1.  Get Full Table

Barcode UUID Date Type Category Notes
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 01/25/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 01/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 02/05/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 02/26/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 03/13/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 03/21/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 05/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 07/12/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 07/25/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 07/27/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 09/06/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 09/14/2012 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 10/10/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 10/22/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2297-01 ead38efb-2670-4586-84b8-db0a488b52ed 12/18/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A11_1147960.tangent.copynumber.data.txt'.
TCGA-HC-7740-01B-04D-2298-08 1237363b-46ba-4359-9af8-bd84098f47c1 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7740-01B-04D-2299-05 f8c98a2c-56b4-4a66-91c0-fabec8124157 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7740-01B-04D-2300-26 cab7bdb8-9c3e-41e0-af32-57ae2bf60421 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7740-01B-04R-2302-07 b7f3a96d-01f8-4ef2-a71d-2c684bd18812 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7740-01B-04R-2303-13 5d449b92-5742-40cb-a6fa-43730576096b 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-7741 231a45e7-ad33-4789-a9fc-74ce7a18fcc3 07/16/2014 PRAD Item is noncanonical FFPE validation
TCGA-HC-8212-01B-05D-2297-01 e8f75aa5-d3a7-45ab-8f3e-bba9bb58cfe1 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1- There are currently no matching frozen tissue analytes that have been shipped as of 06/18/2012.
TCGA-HC-8212-01B-05D-2298-08 a9852ac4-28b1-48d5-9407-e3be42881df8 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1- There are currently no matching frozen tissue analytes that have been shipped as of 06/18/2012.
TCGA-HC-8212-01B-05D-2299-05 1fb82647-cf0d-414a-9eae-320933910946 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1- There are currently no matching frozen tissue analytes that have been shipped as of 06/18/2012.
TCGA-HC-8212-01B-05D-2300-26 63a754a5-a22c-439a-9fe2-0b7065543c0e NA PRAD Item is noncanonical FFPE Validation
TCGA-HC-8212-01B-05R-2302-07 03e61f20-3a2c-4b44-ad8f-a4d13cf39033 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1- There are currently no matching frozen tissue analytes that have been shipped as of 06/18/2012.
TCGA-HC-8212-01B-05R-2303-13 dae95079-1dc8-45bb-b03f-9090e799c9b9 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1- There are currently no matching frozen tissue analytes that have been shipped as of 06/18/2012.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 01/25/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 01/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 02/05/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 02/26/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 03/13/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 03/21/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 05/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 07/12/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 07/25/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 07/27/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 09/06/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 09/14/2012 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 10/10/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 10/22/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2297-01 fc97d832-3e85-45fa-b5a2-c1a7d2ab32fd 12/18/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_B09_1147888.tangent.copynumber.data.txt'.
TCGA-HC-8258-01B-05D-2298-08 e1eef67e-8d86-427e-bf5b-6cf34a01b998 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8258-01B-05D-2299-05 c2d663c1-a355-4215-b4f4-a586f53f7234 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8258-01B-05D-2300-26 e6ebe79a-576a-4667-a89c-34add702f32d NA PRAD Item is noncanonical FFPE Validation
TCGA-HC-8258-01B-05R-2302-07 783062c7-cf22-426d-8cd1-52ecdd28b43d 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8258-01B-05R-2303-13 9ca991b7-b4a7-4eb7-8f7c-f273da795d5d 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 01/25/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 01/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 02/05/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 02/26/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 03/13/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 03/21/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 05/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 07/12/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 07/25/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 07/27/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 09/06/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 09/14/2012 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 10/10/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 10/22/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2297-01 05a21de2-ea0f-47d0-b712-2f9e9741db60 12/18/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A12_1147882.tangent.copynumber.data.txt'.
TCGA-HC-8261-01B-05D-2298-08 52d06f71-3337-45f9-9f4b-ffc975c73870 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8261-01B-05D-2299-05 b1944a95-71da-4197-b862-87519fa802e7 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8261-01B-05D-2300-26 daef9b7a-9662-48ab-8fe6-78007950569a NA PRAD Item is noncanonical FFPE Validation
TCGA-HC-8261-01B-05R-2302-07 3476ee8f-8cbe-4c6e-a3f7-f53facfe585a 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8261-01B-05R-2303-13 a0866097-9034-4683-8baf-a85291f87d24 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 01/25/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2004.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 01/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2012.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 02/05/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2013.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 02/26/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2005.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 03/13/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2014.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 03/21/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2006.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 05/30/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2015.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 07/12/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2016.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 07/25/2014 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2017.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 07/27/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2007.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 09/06/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2008.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 09/14/2012 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2003.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 10/10/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2009.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 10/22/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2010.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2297-01 ae7f9566-e03e-4edd-8dbe-ceae61b47d10 12/18/2013 PRAD Item flagged DNU SDRF in broad.mit.edu_PRAD.Genome_Wide_SNP_6.mage-tab.1.2011.0 flagged aliquot to be excluded for analysis based on file 'CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A06_1147950.tangent.copynumber.data.txt'.
TCGA-HC-8265-01B-04D-2298-08 5ee5825f-1688-49df-a83b-26ca8288c2a4 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8265-01B-04D-2299-05 3cdfb49c-296c-47dc-b049-4ff408122517 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8265-01B-04R-2302-07 da8ee6ab-5fde-462b-96ad-b45b9441e495 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1
TCGA-HC-8265-01B-04R-2303-13 f9ad363f-089a-4d0e-bb3b-72266e11ac8c 06/26/2012 PRAD Item is noncanonical FFPE PRAD Pilot 1