stddata__2014_09_02 Samples Report
- Overview
+ Introduction
- Summary

There were 161 redactions, 2943 replicate aliquots, 23 blacklisted aliquots, and 638 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 90 90 0 80 0 79 0 80 46 91
BLCA 412 222 309 112 367 0 310 0 310 127 130
BRCA 1097 1033 1053 19 1045 526 1058 0 1042 409 976
CESC 307 243 244 0 256 0 252 0 256 0 194
CHOL 36 0 0 0 0 0 0 0 0 0 0
COAD 460 442 438 69 445 153 443 0 406 331 154
COADREAD 631 613 600 104 610 222 606 0 549 461 223
DLBC 58 33 43 0 48 0 28 0 27 0 0
ESCA 185 143 184 32 185 0 125 0 175 0 0
GBM 613 582 571 0 420 540 160 565 0 214 290
HNSC 528 456 511 108 528 0 497 0 512 212 306
KICH 113 96 66 0 66 0 66 0 66 0 66
KIRC 537 520 527 0 535 72 531 0 515 454 417
KIRP 323 221 241 0 242 16 241 0 242 207 168
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 421 513 52 516 27 513 0 512 258 289
LIHC 377 222 266 0 291 0 268 0 268 0 202
LUAD 585 479 493 120 569 32 488 0 491 181 229
LUSC 504 422 490 0 492 154 489 0 467 195 178
MESO 87 36 57 0 87 0 36 0 26 0 0
OV 602 589 576 0 594 574 296 570 453 412 316
PAAD 185 118 102 0 146 0 124 0 129 106 91
PCPG 179 113 175 0 179 0 179 0 179 0 178
PRAD 499 352 420 115 425 0 419 0 421 164 261
READ 171 171 162 35 165 69 163 0 143 130 69
SARC 261 135 213 0 242 0 212 0 240 0 0
SKCM 470 398 384 118 458 0 382 0 415 204 343
STAD 443 353 372 107 386 0 274 0 372 264 221
TGCT 150 0 0 0 150 0 0 0 0 0 0
THCA 503 490 494 98 503 0 494 0 495 222 402
THYM 124 0 0 0 124 0 0 0 0 0 0
UCEC 560 498 540 106 547 54 538 0 534 200 248
UCS 57 57 56 0 57 0 57 0 56 0 57
UVM 80 0 47 0 80 0 0 0 0 0 0
Totals 11314 9135 9834 1091 10422 2217 8901 1135 9020 4336 6073
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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