stddata__2014_10_17 Samples Report
- Overview
+ Introduction
- Summary

There were 161 redactions, 3004 replicate aliquots, 23 blacklisted aliquots, and 676 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 92 90 0 80 0 79 0 80 46 90
BLCA 412 281 410 112 367 0 357 0 409 127 130
BRCA 1097 1043 1088 19 1045 526 1091 0 1077 409 976
CESC 307 250 295 0 256 0 252 0 307 0 194
CHOL 36 0 36 0 0 0 36 0 36 0 0
COAD 460 449 450 69 445 153 443 0 406 331 154
COADREAD 631 620 615 104 610 222 606 0 549 461 223
DLBC 58 35 48 0 48 0 28 0 47 0 0
ESCA 185 151 184 32 185 0 125 0 184 0 0
GBM 613 587 577 0 420 540 160 565 0 214 290
HNSC 528 494 522 108 528 0 497 0 523 212 306
KICH 113 96 66 0 66 0 66 0 66 0 66
KIRC 537 525 528 0 535 72 531 0 516 454 417
KIRP 323 223 289 0 242 16 289 0 291 207 161
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 433 513 52 516 27 513 0 512 258 289
LIHC 377 317 370 0 291 0 268 0 372 0 198
LUAD 585 483 515 120 569 32 488 0 513 181 229
LUSC 504 422 501 0 492 154 501 0 478 195 178
MESO 87 39 87 0 87 0 85 0 76 0 0
OV 602 589 586 0 594 574 296 570 453 412 316
PAAD 185 133 184 0 146 0 178 0 178 106 91
PCPG 179 132 175 0 179 0 179 0 179 0 178
PRAD 499 368 492 115 425 0 486 0 494 164 261
READ 171 171 165 35 165 69 163 0 143 130 69
SARC 261 157 257 0 242 0 257 0 259 0 0
SKCM 470 427 469 118 458 0 467 0 448 204 343
STAD 443 397 442 107 386 0 274 0 442 264 221
TGCT 150 31 150 0 150 0 150 0 75 0 0
THCA 503 497 501 98 503 0 501 0 502 222 402
THYM 124 0 123 0 124 0 116 0 124 0 0
UCEC 560 514 540 106 547 54 538 0 538 200 248
UCS 57 57 56 0 57 0 57 0 56 0 57
UVM 80 0 80 0 80 0 80 0 79 0 0
Totals 11314 9593 10986 1091 10422 2217 9730 1135 10051 4336 6061
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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