stddata__2014_12_06 Samples Report
- Overview
+ Introduction
- Summary

There were 159 redactions, 3165 replicate aliquots, 23 blacklisted aliquots, and 684 FFPE aliquots. The table below represents the sample counts for those samples that were ingested into firehose after filtering out redactions, replicates, and blacklisted data, and segregating FFPEs.

Table 1.  Get Full Table Summary of TCGA Tumor Data. Click on a tumor type to display a tumor type specific Samples Report.

Cohort BCR Clinical CN LowP Methylation mRNA mRNASeq miR miRSeq RPPA MAF
ACC 92 92 90 0 80 0 79 0 80 46 90
BLCA 412 318 410 112 367 0 407 0 409 127 130
BRCA 1098 1068 1089 19 1046 526 1091 0 1078 410 977
CESC 307 268 295 0 256 0 304 0 307 173 194
CHOL 36 0 36 0 0 0 36 0 36 0 0
COAD 460 451 450 69 445 153 456 0 406 331 154
COADREAD 631 622 615 104 610 222 622 0 549 461 223
DLBC 58 40 48 0 48 0 28 0 47 0 0
ESCA 185 159 184 32 185 0 184 0 184 126 0
FPPP 38 38 0 0 0 0 0 0 21 0 0
GBM 613 590 577 0 420 540 160 565 0 214 290
GBMLGG 1129 1033 1090 52 936 567 676 565 512 472 579
HNSC 528 508 522 108 528 0 514 0 523 212 306
KICH 113 97 66 0 66 0 66 0 66 0 66
KIRC 537 526 528 0 535 72 533 0 516 454 417
KIRP 323 242 289 0 242 16 290 0 291 207 161
LAML 200 200 197 0 194 0 179 0 188 0 197
LGG 516 443 513 52 516 27 516 0 512 258 289
LIHC 377 345 370 0 291 0 371 0 372 0 198
LUAD 585 498 516 120 569 32 511 0 513 181 230
LUSC 504 479 501 0 492 154 501 0 478 195 178
MESO 87 69 87 0 87 0 86 0 76 0 0
OV 602 590 586 0 594 574 296 570 453 412 316
PAAD 185 157 184 0 146 0 178 0 178 106 91
PCPG 179 168 175 0 179 0 179 0 179 80 178
PRAD 499 390 492 115 425 0 497 0 494 164 333
READ 171 171 165 35 165 69 166 0 143 130 69
SARC 261 221 257 0 242 0 257 0 259 222 0
SKCM 470 434 469 118 458 0 468 0 448 204 343
STAD 443 403 442 107 386 0 274 0 442 264 221
TGCT 150 71 150 0 150 0 150 0 150 0 0
THCA 503 499 501 98 503 0 501 0 502 222 402
THYM 124 0 123 0 124 0 119 0 124 0 0
UCEC 560 522 540 106 547 54 543 0 538 200 248
UCS 57 57 56 0 57 0 57 0 56 48 57
UVM 80 28 80 0 80 0 80 0 80 12 80
Totals 11353 10142 10988 1091 10423 2217 10077 1135 10149 4998 6215
- Results
+ Sample Heatmaps
+ Filtered Samples
+ FFPE Cases
+ Additional Annotations from the DCC's Annotations Manager
+ Methods & Data
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