Broad GDAC Standard Data Status
stddata__2015_02_02 Run for Tumor Type: COADREAD

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAFrawMAF
COADREAD631623615104622222005494612230

Note that the links below require Broad internal Firehose login credentials.

Pipeline DatasetNot AvailableAvailableInProcessSuccessfulUnsuccessful
1Clinical_Pick_Tier100010
2CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
3CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
4CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
5CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
6CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
7CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
8CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
9CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
10CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
11CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
12Merge_Clinical00010
13Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
14Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
15Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
16Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
17Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
18Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
19Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
20Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
21Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
22Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
23Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
24Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
25Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
26Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
27Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
28Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
29Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
30Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
31Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
32Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
33Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data00010
34Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data00010
35Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data00010
36Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
37Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
38Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
39Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
40Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
41Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
42Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
43Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
44Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
45Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
46Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
47Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
48Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
49Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
50Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
51Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
52Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
53Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
54Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
55Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
56Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
57Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
58Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
59Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
60Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
61Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
62Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
63Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
64Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
65Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
66Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
67Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data00010
68Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data00010
69Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
70Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
71Methylation_Preprocess00010
72miRseq_Mature_Preprocess00010
73miRseq_Preprocess00010
74mRNA_Preprocess_Median00010
75mRNAseq_Preprocess00010
76Mutation_Packager_Calls00010
77Mutation_Packager_Coverage00010
78RPPA_AnnotateWithGene00010
79TR-Clinical_Pick_Tier100010
80TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
81TR-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
82TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
83TR-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
84TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
85TR-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
86TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
87TR-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
88TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
89TR-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
90TR-Merge_Clinical00010
91TR-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
92TR-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
93TR-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
94TR-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
95TR-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
96TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
97TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
98TR-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
99TR-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
100TR-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
101TR-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
102TR-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
103TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
104TR-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
105TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
106TR-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
107TR-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
108TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
109TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
110TR-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
111TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
112TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
113TR-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
114TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
115TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
116TR-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
117TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
118TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
119TR-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
120TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
121TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
122TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
123TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
124TR-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
125TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
126TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
127TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
128TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
129TR-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
130TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
131TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
132TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
133TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
134TR-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
135TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
136TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
137TR-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
138TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
139TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
140TR-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
141TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
142TR-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
143TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
144TR-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
145TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
146TR-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
147TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
148TR-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
149TR-Methylation_Preprocess00010
150TR-miRseq_Mature_Preprocess00010
151TR-miRseq_Preprocess00010
152TR-mRNA_Preprocess_Median10000
153TR-mRNAseq_Preprocess00010
154TR-Mutation_Packager_Calls10000
155TR-Mutation_Packager_Coverage10000
156TR-RPPA_AnnotateWithGene10000
157TP-Clinical_Pick_Tier100010
158TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
159TP-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
160TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
161TP-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
162TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
163TP-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
164TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
165TP-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
166TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
167TP-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
168TP-Merge_Clinical00010
169TP-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
170TP-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
171TP-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
172TP-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
173TP-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg00010
174TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
175TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
176TP-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
177TP-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
178TP-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
179TP-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
180TP-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
181TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
182TP-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
183TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
184TP-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
185TP-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data00010
186TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
187TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
188TP-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
189TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data00010
190TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data00010
191TP-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data00010
192TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
193TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
194TP-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
195TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
196TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
197TP-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
198TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
199TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
200TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
201TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
202TP-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
203TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data00010
204TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data00010
205TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data00010
206TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data00010
207TP-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data00010
208TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
209TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
210TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
211TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
212TP-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
213TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
214TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
215TP-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
216TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
217TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
218TP-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
219TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
220TP-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
221TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
222TP-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
223TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data00010
224TP-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data00010
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391NB-Clinical_Pick_Tier100010
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393NB-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
394NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
395NB-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
396NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
397NB-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
398NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
399NB-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
400NB-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
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402NB-Merge_Clinical00010
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451NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
452NB-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
453NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
454NB-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
455NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
456NB-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
457NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
458NB-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
459NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
460NB-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
461NB-Methylation_Preprocess10000
462NB-miRseq_Mature_Preprocess10000
463NB-miRseq_Preprocess10000
464NB-mRNA_Preprocess_Median10000
465NB-mRNAseq_Preprocess10000
466NB-Mutation_Packager_Calls10000
467NB-Mutation_Packager_Coverage10000
468NB-RPPA_AnnotateWithGene10000
469FFPE-Clinical_Pick_Tier110000
470FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NB10000
471FFPE-CreateLoadfile_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data_NT10000
472FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NB10000
473FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RPKM_log2_NT10000
474FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NB10000
475FFPE-CreateLoadfile_paradigm_mRNAseq_exp_RSEM_log2_NT10000
476FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NB10000
477FFPE-CreateLoadfile_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data_NT10000
478FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NB10000
479FFPE-CreateLoadfile_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data_NT10000
480FFPE-Merge_Clinical10000
481FFPE-Merge_cna__cgh_1x1m_g4447a__mskcc_org__Level_3__segmentation_data_computation__seg10000
482FFPE-Merge_cna__hg_cgh_244a__hms_harvard_edu__Level_3__segmentation__seg10000
483FFPE-Merge_cna__hg_cgh_244a__mskcc_org__Level_3__segmentation_data_computation__seg10000
484FFPE-Merge_cna__hg_cgh_415k_g4124a__hms_harvard_edu__Level_3__segmentation__seg10000
485FFPE-Merge_cna__illuminahiseq_dnaseqc__hms_harvard_edu__Level_3__segmentation__seg10000
486FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_2__quantile_normalization_exon__data10000
487FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data10000
488FFPE-Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__segmented_as_firma__data10000
489FFPE-Merge_methylation__humanmethylation27__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data10000
490FFPE-Merge_methylation__humanmethylation450__jhu_usc_edu__Level_3__within_bioassay_data_set_function__data00010
491FFPE-Merge_mirna__h_mirna_8x15k__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
492FFPE-Merge_mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data10000
493FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data10000
494FFPE-Merge_mirnaseq__illuminaga_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data10000
495FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_gene_expression__data00010
496FFPE-Merge_mirnaseq__illuminahiseq_mirnaseq__bcgsc_ca__Level_3__miR_isoform_expression__data00010
497FFPE-Merge_protein_exp__mda_rppa_core__mdanderson_org__Level_3__protein_normalization__data10000
498FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
499FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
500FFPE-Merge_rnaseq__illuminaga_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
501FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__exon_expression__data10000
502FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__gene_expression__data10000
503FFPE-Merge_rnaseq__illuminaga_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
504FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__exon_expression__data10000
505FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__gene_expression__data10000
506FFPE-Merge_rnaseq__illuminahiseq_rnaseq__bcgsc_ca__Level_3__splice_junction_expression__data10000
507FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__exon_expression__data10000
508FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__gene_expression__data10000
509FFPE-Merge_rnaseq__illuminahiseq_rnaseq__unc_edu__Level_3__splice_junction_expression__data10000
510FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
511FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
512FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
513FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
514FFPE-Merge_rnaseqv2__illuminaga_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
515FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__exon_quantification__data10000
516FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__junction_quantification__data10000
517FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes__data10000
518FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_genes_normalized__data10000
519FFPE-Merge_rnaseqv2__illuminahiseq_rnaseqv2__unc_edu__Level_3__RSEM_isoforms_normalized__data10000
520FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_2__birdseed_genotype__birdseed00010
521FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg18__seg00010
522FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg00010
523FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg18__seg00010
524FFPE-Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg00010
525FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cna__seg10000
526FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_cnv__seg10000
527FFPE-Merge_snp__human1mduo__hudsonalpha_org__Level_3__segmented_loh__seg10000
528FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cna__seg10000
529FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_cnv__seg10000
530FFPE-Merge_snp__humanhap550__hudsonalpha_org__Level_3__segmented_loh__seg10000
531FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
532FFPE-Merge_transcriptome__agilentg4502a_07_1__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
533FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
534FFPE-Merge_transcriptome__agilentg4502a_07_2__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
535FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_2__unc_lowess_normalization_probe_level__data10000
536FFPE-Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data10000
537FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_2__probeset_rma__data10000
538FFPE-Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data10000
539FFPE-Methylation_Preprocess00010
540FFPE-miRseq_Mature_Preprocess00010
541FFPE-miRseq_Preprocess00010
542FFPE-mRNA_Preprocess_Median10000
543FFPE-mRNAseq_Preprocess10000
544FFPE-Mutation_Packager_Calls10000
545FFPE-Mutation_Packager_Coverage10000
546FFPE-RPPA_AnnotateWithGene10000
Total395001501

This table generated on Mon Apr 6 10:41:56 2015