Summary: Broad GDAC Ingested TCGA Data

Summary of TCGA Tumor Data
Ingested into Broad GDAC Pipeline
2015_02_02 stddata Run

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF	rawMAF
ACC	92	92	90	0	80	0	0	0	80	46	90	0
BLCA	412	348	410	112	412	0	0	0	409	127	130	0
BRCA	1098	1070	1089	19	1081	526	0	0	1078	410	977	0
CESC	307	286	295	0	307	0	0	0	307	173	194	0
CHOL	36	34	36	0	36	0	0	0	36	0	0	0
COAD	460	452	450	69	457	153	0	0	406	331	154	0
COADREAD	631	623	615	104	622	222	0	0	549	461	223	0
DLBC	58	46	48	0	48	0	0	0	47	0	0	0
ESCA	185	170	184	32	185	0	0	0	184	126	0	0
FPPP	38	38	0	0	0	0	0	0	21	0	0	0
GBM	613	591	577	0	420	540	0	565	0	214	290	0
GBMLGG	1129	1048	1090	52	936	567	0	565	512	472	576	0
HNSC	528	511	522	108	528	0	0	0	523	212	279	0
KICH	113	110	66	0	66	0	0	0	66	0	66	0
KIPAN	973	897	883	0	892	88	0	0	873	661	644	0
KIRC	537	529	528	0	535	72	0	0	516	454	417	0
KIRP	323	258	289	0	291	16	0	0	291	207	161	0
LAML	200	200	197	0	194	0	0	0	188	0	197	0
LGG	516	457	513	52	516	27	0	0	512	258	286	0
LIHC	377	360	370	0	377	0	0	0	372	0	198	0
LUAD	585	518	516	120	578	32	0	0	513	181	230	0
LUSC	504	491	501	0	503	154	0	0	478	195	178	0
MESO	87	72	87	0	87	0	0	0	87	0	0	0
OV	602	591	586	0	594	574	0	570	453	412	316	0
PAAD	185	170	184	0	184	0	0	0	178	106	123	0
PCPG	179	178	175	0	179	0	0	0	179	80	178	0
PRAD	499	438	492	115	498	0	0	0	494	164	425	0
READ	171	171	165	35	165	69	0	0	143	130	69	0
SARC	260	246	256	0	260	0	0	0	258	221	0	0
SKCM	470	438	469	118	470	0	0	0	448	204	343	0
STAD	443	430	442	107	443	0	0	0	442	264	221	0
TGCT	150	122	150	0	150	0	0	0	150	118	0	0
THCA	503	501	501	98	503	0	0	0	502	222	402	0
THYM	124	115	123	0	124	0	0	0	124	90	0	0
UCEC	560	532	540	106	547	54	0	0	538	200	248	0
UCS	57	57	56	0	57	0	0	0	56	48	57	0
UVM	80	71	80	0	80	0	0	0	80	12	80	0
Totals	11352	10693	10987	1091	10955	2217	0	1135	10159	5205	6309	0